Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016786

Physical Location & Seq

Genomic Coordinates Reverse (-)

16452806 .. 16453354

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032559

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTCAAACACCCCCTCCAACTCCAGTTCCAACTCCAACTCCTAGTCCTACTTCAATTAGAACAGTACTACTTCGTCACCAAAACCCTCCTGATCATGATATAAATCCACCCCCTCATGATCTCAATGTTATGATCATTTTGGCAGCCATTTGCTGCGCTTTTGTTTGTGCCCTCGGCCTCAATTCCATGCTCCAATGCGTTTTTCAGTGTGCAAATCGTGCCATAACCGAACCAGTCCGATGGGTCTCTTCACGTAGGCTAAATTCAGGTCTTAAGAAGAAGGAAATGGTAGCTTTGCCAACTTCAACTTATTCGAACTCATCAAGCTCTTCTCCATCACCATCATCATCTCCGGGCTGTGCTATTTGTCTCGTGGACTTCTCCGATGGGGACAAGATTCGGGTGCTGCCCAAATGCAACCATCGGTTTCATGTTGTGTGCATTGACAAGTGGTTGCAGTCTCACTCATCCTGCCCTACTTGCCGGCAGAGACTCAAGTCTTCCAGTGATTCCATGCTCTCTCCATCTGAGATTGTCACAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010498 GO:0010565 GO:0010817 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0031323 GO:0031326 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042304 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046885 GO:0046890 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080090 GO:0080140 GO:0080141 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

183

Amino Acids

19.79

Weight (kDa)

8.84

Isoelectric Point (pI)

68.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	121 - 163	4e-15	Ring finger domain
zf-RING_11	PF17123	121 - 149	1.4e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	121 - 162	1.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	121 - 162	4.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	131 - 167	1.7e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	134 - 163	2.3e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016786)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12790
malus_domestica	MD05G1247700.v1.1 MD10G1228500.v1.1
prunus_persica	Prupe.4G116300_v2.0.a1
pyrus_communis	pycom05g22380
rosa_chinensis	RchiOBHm_Chr5g0020761
rosa_laevigata	RLG00000032559
rosa_roxburghii	Rroxscaffold_1G00057540
rosa_rugosa	Rorug05G0062800
rosa_samantha	Rh5AG152600 Rh5BG152300 Rh5CG163800 Rh5DG151800
rosa_wichuraiana	Rw5G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	265
AfaI	GTAC	1 cut(s)	69
AflII	CTTAAG	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	57, 309
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	2 cut(s)	296, 330
AluI	AGCT	2 cut(s)	296, 330
Alw26I	GTCTC	4 cut(s)	253, 377, 468, 487
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	3 cut(s)	146, 156, 409
ApoI	RAATTY	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	161
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	71, 333
AsuII	TTCGAA	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	175
BauI	CACGAG	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	495
BbvI	GCAGC	3 cut(s)	143, 158, 396
BccI	CCATC	6 cut(s)	237, 346, 352, 383, 432, 535
BclI	TGATCA	2 cut(s)	94, 135
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	4 cut(s)	253, 377, 468, 487
BfaI	CTAG	2 cut(s)	45, 547
BfrI	CTTAAG	1 cut(s)	275
BisI	GCNGC	3 cut(s)	147, 157, 410
BlsI	GCNGC	3 cut(s)	148, 158, 411
BmcAI	AGTACT	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	357
BoxI	GACNNNNGTC	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	495
BpmI	CTGGAG	1 cut(s)	9
Bpu14I	TTCGAA	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	482
BpuMI	CCSGG	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	175
BsaXI	ACNNNNNCTCC	3 cut(s)	25, 31, 55
Bse118I	RCCGGY	1 cut(s)	486
Bse1I	ACTGG	3 cut(s)	26, 236, 507
Bse8I	GATNNNNATC	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	470
BseJI	GATNNNNATC	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	3 cut(s)	26, 236, 507
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	3 cut(s)	143, 158, 396
BshFI	GGCC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	356, 487
BslFI	GGGAC	1 cut(s)	407
BsmAI	GTCTC	4 cut(s)	253, 377, 468, 487
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	180
Bso31I	GGTCTC	1 cut(s)	253
Bsp119I	TTCGAA	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	94, 121, 135
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	523
BspHI	TCATGA	2 cut(s)	97, 118
BspQI	GCTCTTC	1 cut(s)	337
BspT104I	TTCGAA	1 cut(s)	317
BspTI	CTTAAG	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	486
BsrI	ACTGG	3 cut(s)	26, 236, 507
BssAI	RCCGGY	1 cut(s)	486
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	3 cut(s)	94, 121, 135
BssSI	CACGAG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	2 cut(s)	256, 337
BstAFI	CTTAAG	1 cut(s)	275
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	257
BstBI	TTCGAA	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	488
BstDEI	CTNAG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	3 cut(s)	97, 124, 138
BstMAI	GTCTC	4 cut(s)	253, 377, 468, 487
BstMBI	GATC	3 cut(s)	94, 121, 135
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 483
BstPAI	GACNNNNGTC	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	3 cut(s)	143, 158, 396
BstV2I	GAAGAC	1 cut(s)	495
BstXI	CCANNNNNNTGG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	470
BtsIMutI	CAGTG	2 cut(s)	215, 514
Cac8I	GCNNGC	1 cut(s)	488
CciI	TCATGA	2 cut(s)	97, 118
CfoI	GCGC	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	486
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	5 cut(s)	98, 119, 190, 434, 517
CviJI	RGCY	7 cut(s)	5, 149, 180, 262, 296, 330, 360
CviKI_1	RGCY	7 cut(s)	5, 149, 180, 262, 296, 330, 360
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	3 cut(s)	96, 123, 137
DpnII	GATC	3 cut(s)	94, 121, 135
Eam1104I	CTCTTC	2 cut(s)	256, 337
EarI	CTCTTC	2 cut(s)	256, 337
Eco31I	GGTCTC	1 cut(s)	253
FaeI	CATG	5 cut(s)	101, 122, 193, 437, 520
FaiI	YATR	8 cut(s)	99, 104, 120, 134, 191, 227, 435, 518
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	5 cut(s)	97, 118, 189, 433, 516
FbaI	TGATCA	2 cut(s)	94, 135
Fnu4HI	GCNGC	3 cut(s)	147, 157, 410
FokI	GGATG	1 cut(s)	457
Fsp4HI	GCNGC	3 cut(s)	147, 157, 410
FspBI	CTAG	2 cut(s)	45, 547
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	3 cut(s)	147, 157, 410
GsuI	CTGGAG	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	2 cut(s)	356, 487
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	5 cut(s)	101, 122, 193, 437, 520
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	3 cut(s)	400, 495, 512
HpaII	CCGG	2 cut(s)	356, 487
HphI	GGTGA	2 cut(s)	71, 333
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	3 cut(s)	242, 388, 532
Hpy188III	TCNNGA	3 cut(s)	92, 98, 119
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	4 cut(s)	215, 420, 444, 460
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 483
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	5 cut(s)	101, 122, 193, 437, 520
HspAI	GCGC	1 cut(s)	159
KroI	GCCGGC	1 cut(s)	486
KroNI	GCCGGC	1 cut(s)	488
Ksp22I	TGATCA	2 cut(s)	94, 135
Kzo9I	GATC	3 cut(s)	94, 121, 135
LguI	GCTCTTC	1 cut(s)	337
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	8 cut(s)	39, 105, 249, 255, 369, 487, 500, 520
Lsp1109I	GCAGC	3 cut(s)	143, 158, 396
MaeI	CTAG	2 cut(s)	45, 547
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	2 cut(s)	77, 538
MalI	GATC	3 cut(s)	96, 123, 137
MboI	GATC	3 cut(s)	94, 121, 135
MboII	GAAGA	4 cut(s)	243, 292, 324, 495
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	3 cut(s)	57, 184, 265
MlyI	GAGTC	1 cut(s)	489
MmeI	TCCRAC	3 cut(s)	44, 56, 62
MnlI	CCTC	5 cut(s)	27, 99, 126, 185, 191
MroNI	GCCGGC	1 cut(s)	486
MseI	TTAA	1 cut(s)	276
MspCI	CTTAAG	1 cut(s)	275
MspI	CCGG	2 cut(s)	356, 487
MspR9I	CCNGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	221, 483
NaeI	GCCGGC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	3 cut(s)	94, 121, 135
NgoMIV	GCCGGC	1 cut(s)	486
NlaIII	CATG	5 cut(s)	101, 122, 193, 437, 520
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	2 cut(s)	77, 538
NspV	TTCGAA	1 cut(s)	317
PagI	TCATGA	2 cut(s)	97, 118
PciSI	GCTCTTC	1 cut(s)	337
PdiI	GCCGGC	1 cut(s)	488
PfeI	GAWTC	2 cut(s)	400, 512
PkrI	GCNGC	3 cut(s)	148, 158, 411
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
Ppu21I	YACGTR	1 cut(s)	257
PshAI	GACNNNNGTC	1 cut(s)	499
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	3 cut(s)	147, 157, 410
Sau3AI	GATC	3 cut(s)	94, 121, 135
ScaI	AGTACT	1 cut(s)	69
SchI	GAGTC	1 cut(s)	489
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	5 cut(s)	259, 274, 298, 332, 548
SfuI	TTCGAA	1 cut(s)	317
SmlI	CTYRAG	2 cut(s)	275, 497
SmoI	CTYRAG	2 cut(s)	275, 497
Sse9I	AATT	3 cut(s)	57, 184, 265
SspMI	CTAG	2 cut(s)	45, 547
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	1 cut(s)	317
TasI	AATT	3 cut(s)	57, 184, 265
TatI	WGTACW	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	400, 512
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	215, 514
TseFI	GTSAC	2 cut(s)	77, 538
TseI	GCWGC	3 cut(s)	146, 156, 409
Tsp45I	GTSAC	2 cut(s)	77, 538
TspDTI	ATGAA	1 cut(s)	422
TspRI	CASTG	2 cut(s)	215, 514
Vha464I	CTTAAG	1 cut(s)	275
XapI	RAATTY	1 cut(s)	265
XspI	CTAG	2 cut(s)	45, 547
ZrmI	AGTACT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.