Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0016786

Physical Location & Seq

Genomic Coordinates Reverse (-)

6287927 .. 6288469

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G116300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTCAAACACCCCCTCCAATTCCTCCAATTCCTCCAATTCCTAGTCCAACATCAATCAGAACACTCTGTGATCAAGACCCTCATCATGATCAACTCCAACCCCCAAACCATCTCAATTCTATGGTCATCTTGGCAGCCATTTTCTGTGCTTTTGTATGTGCTCTTGGTCTCAACTCCATGTTACAATGTGTTTTTCAGTGTGCCAACCGTGCCCTTACCGAACCTGTCCAATGGGTAGCTTCGCGCAGGCTTAATTCAGGGCTTAAGAAGGAGGAGATGGTAGCTTTGCCCACTTCAACTTATAGTGCCGATTTGAACACTTCTCCATCATCATCATCTTCTTCTTCTTCCGGTTGTGCTATTTGTTTGGTGGACTTTTCTGATGGGGACAAGATAAGGGTCCTGCCCAAATGCAACCATTGGTTTCATGTTGCATGCATTGACAAATGGTTGCTCCGCCACTCTTCTTGCCCTACTTGCAGGCATAGGCTCAAGTCAAGTGGCTCCATGCCCTCTCTTGCTGAAATTGTCACAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010498 GO:0010565 GO:0010817 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0031323 GO:0031326 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042304 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046885 GO:0046890 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080090 GO:0080140 GO:0080141 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

181

Amino Acids

19.6

Weight (kDa)

8.03

Isoelectric Point (pI)

58.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016786)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12790
malus_domestica	MD05G1247700.v1.1 MD10G1228500.v1.1
prunus_persica	Prupe.4G116300_v2.0.a1
pyrus_communis	pycom05g22380
rosa_chinensis	RchiOBHm_Chr5g0020761
rosa_laevigata	RLG00000032559
rosa_roxburghii	Rroxscaffold_1G00057540
rosa_rugosa	Rorug05G0062800
rosa_samantha	Rh5AG152600 Rh5BG152300 Rh5CG163800 Rh5DG151800
rosa_wichuraiana	Rw5G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	247
AciI	CCGC	1 cut(s)	460
AdeI	CACNNNGTG	1 cut(s)	71
AflII	CTTAAG	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	300, 319
AluBI	AGCT	2 cut(s)	242, 287
AluI	AGCT	2 cut(s)	242, 287
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	403
BaeGI	GKGCMC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	4 cut(s)	120, 274, 337, 380
BclI	TGATCA	2 cut(s)	73, 91
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	45
BfrI	CTTAAG	1 cut(s)	266
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	2 cut(s)	404, 508
BpuEI	CTTGAG	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	176
BsaWI	WCCGGW	1 cut(s)	353
BsaXI	ACNNNNNCTCC	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	290
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	404
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	404
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	166, 217
Bsp143I	GATC	2 cut(s)	73, 91
BspACI	CCGC	1 cut(s)	460
BspFNI	CGCG	1 cut(s)	247
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	404, 508
BspTI	CTTAAG	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	176
BssMI	GATC	2 cut(s)	73, 91
Bst4CI	ACNGT	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	472
BstAFI	CTTAAG	1 cut(s)	266
BstC8I	GCNNGC	3 cut(s)	251, 439, 485
BstFNI	CGCG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	2 cut(s)	76, 94
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	2 cut(s)	73, 91
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 480
BstNSI	RCATGY	1 cut(s)	441
BstSLI	GKGCMC	1 cut(s)	217
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	206
Cac8I	GCNNGC	3 cut(s)	251, 439, 485
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	403
CspCI	CAANNNNNGTGG	4 cut(s)	452, 484, 487, 519
CviAII	CATG	5 cut(s)	89, 181, 431, 438, 511
CviJI	RGCY	8 cut(s)	5, 140, 242, 253, 265, 287, 493, 507
CviKI_1	RGCY	8 cut(s)	5, 140, 242, 253, 265, 287, 493, 507
DpnI	GATC	2 cut(s)	75, 93
DpnII	GATC	2 cut(s)	73, 91
DraIII	CACNNNGTG	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	472
EciI	GGCGGA	1 cut(s)	449
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	403
EcoT22I	ATGCAT	1 cut(s)	443
FaeI	CATG	5 cut(s)	92, 184, 434, 441, 514
FaiI	YATR	9 cut(s)	90, 125, 160, 182, 306, 432, 439, 489, 512
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	5 cut(s)	88, 180, 430, 437, 510
FbaI	TGATCA	2 cut(s)	73, 91
Fnu4HI	GCNGC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	1 cut(s)	138
HapII	CCGG	1 cut(s)	354
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	5 cut(s)	92, 184, 434, 441, 514
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	354
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	62, 385
Hpy188III	TCNNGA	2 cut(s)	77, 89
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	4 cut(s)	417, 437, 441, 483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 480
Hsp92II	CATG	5 cut(s)	92, 184, 434, 441, 514
HspAI	GCGC	1 cut(s)	247
Ksp22I	TGATCA	2 cut(s)	73, 91
Kzo9I	GATC	2 cut(s)	73, 91
LmnI	GCTCC	2 cut(s)	462, 512
LpnPI	CCDG	6 cut(s)	235, 240, 246, 367, 419, 469
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	183, 532
MalI	GATC	2 cut(s)	75, 93
MboI	GATC	2 cut(s)	73, 91
MboII	GAAGA	5 cut(s)	333, 336, 339, 342, 459
MhlI	GDGCHC	2 cut(s)	166, 217
MluCI	AATT	6 cut(s)	21, 30, 39, 118, 256, 528
MmeI	TCCRAC	2 cut(s)	74, 124
MnlI	CCTC	6 cut(s)	27, 36, 45, 93, 268, 526
Mph1103I	ATGCAT	1 cut(s)	443
MseI	TTAA	2 cut(s)	255, 267
MspCI	CTTAAG	1 cut(s)	266
MspI	CCGG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	212, 480
NdeII	GATC	2 cut(s)	73, 91
NlaIII	CATG	5 cut(s)	92, 184, 434, 441, 514
NlaIV	GGNNCC	2 cut(s)	404, 508
NmuCI	GTSAC	1 cut(s)	532
NsiI	ATGCAT	1 cut(s)	443
NspI	RCATGY	1 cut(s)	441
PaeI	GCATGC	1 cut(s)	441
PagI	TCATGA	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	403
Psp5II	RGGWCCY	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	404, 508
PspPI	GGNCC	1 cut(s)	403
PspPPI	RGGWCCY	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	255, 267
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	73, 91
Sau96I	GGNCC	1 cut(s)	403
SduI	GDGCHC	2 cut(s)	166, 217
SetI	ASST	4 cut(s)	229, 244, 289, 542
SinI	GGWCC	1 cut(s)	403
SmlI	CTYRAG	2 cut(s)	266, 494
SmoI	CTYRAG	2 cut(s)	266, 494
SphI	GCATGC	1 cut(s)	441
Sse9I	AATT	6 cut(s)	21, 30, 39, 118, 256, 528
SsiI	CCGC	1 cut(s)	460
SspMI	CTAG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	212
TasI	AATT	6 cut(s)	21, 30, 39, 118, 256, 528
Tru1I	TTAA	2 cut(s)	255, 267
Tru9I	TTAA	2 cut(s)	255, 267
TscAI	CASTG	1 cut(s)	206
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	403
XceI	RCATGY	1 cut(s)	441
XspI	CTAG	1 cut(s)	45
Zsp2I	ATGCAT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.