Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016786

Physical Location & Seq

Genomic Coordinates Forward (+)

79506957 .. 79507505

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00057540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTCAAACACCCCCTCCAACTCCAATTCCAACTCCAACTCCTAGTCCTACTTCAATTAGAACAGTACTACTTCGTCACCAAAACCCTCCTGATCATGATATAAATCCACCCCCTCATGATCTCAATGTTATGATCATTTTGGCAGCCATTTGCTGCGCTTTTGTTTGTGCCCTCGGCCTCAATTCCATGCTCCAATGCGTTTTTCAGTGCGTAAATCGTGCCATAACCGAACCAGTCCGATGGGTCGCTTCACGTAGGCTAAATTCAGGTCTAAAGAAGAAGGAAATGGTAGCTTTGCCAACCTCAACTTATTCGAACTCATCAAGCTCTTCTCCATCACCATCATCATCTCCGGGCTGTGCTATTTGTCTCGTGGACTTCTCCGATGGGGACAAGATTCGGGTGCTGCCCAAATGCAACCATCGGTTTCATGTTGTGTGCATTGACAAGTGGTTGCAGTCTCACTCATCCTGCCCTACTTGCCGGCAGAGACTCAAGTCTTCCAGTGATTCCATGCTCTCTCTATCTGAGATTGTCACAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010498 GO:0010565 GO:0010817 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0031323 GO:0031326 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042304 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046885 GO:0046890 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080090 GO:0080140 GO:0080141 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

182

Amino Acids

19.84

Weight (kDa)

8.84

Isoelectric Point (pI)

61.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	121 - 163	4e-15	Ring finger domain
zf-RING_11	PF17123	121 - 149	1.4e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	121 - 162	1.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	121 - 162	4.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	131 - 167	1.7e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	134 - 163	2.3e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016786)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12790
malus_domestica	MD05G1247700.v1.1 MD10G1228500.v1.1
prunus_persica	Prupe.4G116300_v2.0.a1
pyrus_communis	pycom05g22380
rosa_chinensis	RchiOBHm_Chr5g0020761
rosa_laevigata	RLG00000032559
rosa_roxburghii	Rroxscaffold_1G00057540
rosa_rugosa	Rorug05G0062800
rosa_samantha	Rh5AG152600 Rh5BG152300 Rh5CG163800 Rh5DG151800
rosa_wichuraiana	Rw5G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	265
AfaI	GTAC	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	57
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	2 cut(s)	296, 330
AluI	AGCT	2 cut(s)	296, 330
Alw26I	GTCTC	3 cut(s)	377, 468, 487
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	3 cut(s)	146, 156, 409
ApoI	RAATTY	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	161
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	71, 333
AsuII	TTCGAA	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	175
BauI	CACGAG	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	495
BbvI	GCAGC	3 cut(s)	143, 158, 396
BccI	CCATC	5 cut(s)	237, 346, 352, 383, 432
BclI	TGATCA	2 cut(s)	94, 135
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	3 cut(s)	377, 468, 487
BfaI	CTAG	2 cut(s)	45, 547
BisI	GCNGC	3 cut(s)	147, 157, 410
BlsI	GCNGC	3 cut(s)	148, 158, 411
BmcAI	AGTACT	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	357
BoxI	GACNNNNGTC	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	495
Bpu14I	TTCGAA	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	482
BpuMI	CCSGG	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	175
BsaXI	ACNNNNNCTCC	3 cut(s)	25, 31, 55
Bse118I	RCCGGY	1 cut(s)	486
Bse1I	ACTGG	2 cut(s)	236, 507
Bse8I	GATNNNNATC	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	470
BseJI	GATNNNNATC	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	2 cut(s)	236, 507
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	3 cut(s)	143, 158, 396
BshFI	GGCC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	356, 487
BslFI	GGGAC	1 cut(s)	407
BsmAI	GTCTC	3 cut(s)	377, 468, 487
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	180
Bsp119I	TTCGAA	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	94, 121, 135
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	523
BspHI	TCATGA	2 cut(s)	97, 118
BspQI	GCTCTTC	1 cut(s)	337
BspT104I	TTCGAA	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	236, 507
BssAI	RCCGGY	1 cut(s)	486
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	3 cut(s)	94, 121, 135
BssSI	CACGAG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	337
BstBAI	YACGTR	1 cut(s)	257
BstBI	TTCGAA	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	488
BstDEI	CTNAG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	3 cut(s)	97, 124, 138
BstMAI	GTCTC	3 cut(s)	377, 468, 487
BstMBI	GATC	3 cut(s)	94, 121, 135
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstPAI	GACNNNNGTC	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	3 cut(s)	143, 158, 396
BstV2I	GAAGAC	1 cut(s)	495
BstXI	CCANNNNNNTGG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	470
BtsIMutI	CAGTG	2 cut(s)	215, 514
Cac8I	GCNNGC	1 cut(s)	488
CciI	TCATGA	2 cut(s)	97, 118
CfoI	GCGC	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	486
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	5 cut(s)	98, 119, 190, 434, 517
CviJI	RGCY	7 cut(s)	5, 149, 180, 262, 296, 330, 360
CviKI_1	RGCY	7 cut(s)	5, 149, 180, 262, 296, 330, 360
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	3 cut(s)	96, 123, 137
DpnII	GATC	3 cut(s)	94, 121, 135
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
FaeI	CATG	5 cut(s)	101, 122, 193, 437, 520
FaiI	YATR	8 cut(s)	99, 104, 120, 134, 191, 227, 435, 518
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	5 cut(s)	97, 118, 189, 433, 516
FbaI	TGATCA	2 cut(s)	94, 135
Fnu4HI	GCNGC	3 cut(s)	147, 157, 410
FokI	GGATG	1 cut(s)	457
Fsp4HI	GCNGC	3 cut(s)	147, 157, 410
FspBI	CTAG	2 cut(s)	45, 547
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	3 cut(s)	147, 157, 410
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	2 cut(s)	356, 487
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	5 cut(s)	101, 122, 193, 437, 520
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	3 cut(s)	400, 495, 512
HpaII	CCGG	2 cut(s)	356, 487
HphI	GGTGA	2 cut(s)	71, 333
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	3 cut(s)	242, 388, 532
Hpy188III	TCNNGA	3 cut(s)	92, 98, 119
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	420, 444, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	5 cut(s)	101, 122, 193, 437, 520
HspAI	GCGC	1 cut(s)	159
KroI	GCCGGC	1 cut(s)	486
KroNI	GCCGGC	1 cut(s)	488
Ksp22I	TGATCA	2 cut(s)	94, 135
Kzo9I	GATC	3 cut(s)	94, 121, 135
LguI	GCTCTTC	1 cut(s)	337
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	7 cut(s)	105, 249, 255, 369, 487, 500, 520
Lsp1109I	GCAGC	3 cut(s)	143, 158, 396
MaeI	CTAG	2 cut(s)	45, 547
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	2 cut(s)	77, 538
MalI	GATC	3 cut(s)	96, 123, 137
MboI	GATC	3 cut(s)	94, 121, 135
MboII	GAAGA	3 cut(s)	292, 324, 495
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	4 cut(s)	27, 57, 184, 265
MlyI	GAGTC	1 cut(s)	489
MmeI	TCCRAC	3 cut(s)	44, 56, 62
MnlI	CCTC	6 cut(s)	27, 99, 126, 185, 191, 316
MroNI	GCCGGC	1 cut(s)	486
MspI	CCGG	2 cut(s)	356, 487
MspR9I	CCNGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	483
NaeI	GCCGGC	1 cut(s)	488
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	3 cut(s)	94, 121, 135
NgoMIV	GCCGGC	1 cut(s)	486
NlaIII	CATG	5 cut(s)	101, 122, 193, 437, 520
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	2 cut(s)	77, 538
NspV	TTCGAA	1 cut(s)	317
PagI	TCATGA	2 cut(s)	97, 118
PciSI	GCTCTTC	1 cut(s)	337
PdiI	GCCGGC	1 cut(s)	488
PfeI	GAWTC	2 cut(s)	400, 512
PkrI	GCNGC	3 cut(s)	148, 158, 411
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
Ppu21I	YACGTR	1 cut(s)	257
PshAI	GACNNNNGTC	1 cut(s)	499
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	337
SatI	GCNGC	3 cut(s)	147, 157, 410
Sau3AI	GATC	3 cut(s)	94, 121, 135
ScaI	AGTACT	1 cut(s)	69
SchI	GAGTC	1 cut(s)	489
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	6 cut(s)	259, 274, 298, 308, 332, 548
SfuI	TTCGAA	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	4 cut(s)	27, 57, 184, 265
SspMI	CTAG	2 cut(s)	45, 547
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	1 cut(s)	317
TasI	AATT	4 cut(s)	27, 57, 184, 265
TatI	WGTACW	1 cut(s)	67
TfiI	GAWTC	2 cut(s)	400, 512
TscAI	CASTG	2 cut(s)	215, 514
TseFI	GTSAC	2 cut(s)	77, 538
TseI	GCWGC	3 cut(s)	146, 156, 409
Tsp45I	GTSAC	2 cut(s)	77, 538
TspDTI	ATGAA	1 cut(s)	422
TspRI	CASTG	2 cut(s)	215, 514
XapI	RAATTY	1 cut(s)	265
XspI	CTAG	2 cut(s)	45, 547
ZrmI	AGTACT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.