MD05G1302200.v1.1

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
43467516 .. 43470860
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1302200.v1.1.491

Sequence Viewer

Length: 1335 bp
ATGTCTGATTCTAATTCTACACCTGCTTCTTCTTCTTCTCCTTCTCCTCTATGGGTATATTCTTACATAAAGCTTAGGTTTTTCAACCGAGTCCAACGGTTCCTACGCTCCAAAAGCGCCCGCAAGCGCCCTACGCCGTCCGATCACTTCGACACATCATCAAGACCATCCGAAGTTGTAAGCAATAGTAATGAAGTAACGGTACGACAAGTCGTTATGGAGAAGGAGAGTGGTGGTGATCATGAGGATTCTGTGATGGGATTGCAAAGGGCAGTGAAGAAGCTTCACTTTGGAATTAGTTGGGAAGAGAAGGAGTTGGCGGCTATGGAGATTGGTACGTTGGCTAAAGAAGATGTCAAGGTGAGGAAGCTGGTGGGCGGGCTAGGTATTATACCGGTTTTGGTGTCCATGGCGGCGTCAGAGGTGGTTGCTCGCCGGCGAGTTGCAGTTTGCGCCTTGATTGAGCTTGCTAATGGAACTTACACGAACAAGGCTCTCATGGTGGATGCAGGAATATTCTCAAAGCTACAAAACGACATCAACATTCTTGATGGGCCAACAAGGCACCAATTTGCAGAGTTGCTCTTGTTGCTGTCCTCACTTGCAAATACCCAATTCCCTCTGTCCTCATCAGAAATTGTCCCGTTTCTTGTTGGCATTATTGAGTCAAGCACTTCGACCATCGAAACCAAAGAGCCATGTTTGGGAGCTTTGTTCAACCTCTCCACAATGTTGGACAGTGCAGCCAGTTTGGTCTCTAACGGGGTGGTCGAGGATCTCCTGAAGCTATCCACGACCAAAGCGCTTTCTGAAAATGCACTTGCGACGCTTGGGAACTTGGTGGTTACCCTAATGGGGAAAAAGGCCATGGAAAATAGCGCGGCGGTGCCGGGGAGCTTGATAGAGATTTTGACATGGGATGAGAAGCCCAAATGCCAGGAGCTCTCTTGCTACATCCTAATGATTTTAGCTCACCAAAGCTCAGACCAAAGGGAAAAAATGGCCAAGTCAGGAATTGTGCCCATACTTCTAGAGGTGGCATTGCTGGGAAGCTCTCTAGCTCAAAAGAGGGCACTAAAACTATTGCAGTGGTTTAAGGATGAGAGGCAAGCAAAGATGGGCCCACACTCAGGGCCCCAGACAGCTAGGGTTCCAATCGGTTCACCTTTAAATCAAAGGGACGCACAACAAGGGAAGAAAATGATGAACAATTTGGTGAAACAAAGTTTGTACAAGAATATGGAAATGATCACAATGAGGGCTAGTGCTATTGGGGACTCATCCAAGCTCAAGGCTTTGATCATTAGCACAAGCTCTAAGAGCTTGCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

445

Amino Acids

48.41

Weight (kDa)

9.23

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 207 - 347 1.2e-06 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013290)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 31
AccB1I GGYRCC 2 cut(s) 564, 886
AccII CGCG 1 cut(s) 881
AciI CCGC 6 cut(s) 121, 320, 378, 413, 881, 884
AclWI GGATC 1 cut(s) 783
AcoI YGGCCR 1 cut(s) 1002
AcuI CTGAAG 1 cut(s) 803
AcyI GRCGYC 1 cut(s) 416
AfaI GTAC 3 cut(s) 204, 337, 1232
AfeI AGCGCT 1 cut(s) 804
AfiI CCNNNNNNNGG 3 cut(s) 704, 855, 1130
AgeI ACCGGT 1 cut(s) 394
AgsI TTSAA 2 cut(s) 85, 718
AjnI CCWGG 1 cut(s) 936
Alw21I GWGCWC 1 cut(s) 945
Alw26I GTCTC 1 cut(s) 760
AlwI GGATC 1 cut(s) 783
Aor51HI AGCGCT 1 cut(s) 804
AoxI GGCC 5 cut(s) 554, 864, 1002, 1120, 1133
ApaI GGGCCC 2 cut(s) 1124, 1137
ApeKI GCWGC 1 cut(s) 743
AsiGI ACCGGT 1 cut(s) 394
AspLEI GCGC 5 cut(s) 119, 129, 455, 805, 881
AspS9I GGNCC 5 cut(s) 554, 1120, 1121, 1133, 1134
AsuC2I CCSGG 1 cut(s) 891
AsuHPI GGTGA 5 cut(s) 248, 373, 965, 1155, 1228
BaeGI GKGCMC 4 cut(s) 1023, 1075, 1124, 1137
BalI TGGCCA 1 cut(s) 1004
BanI GGYRCC 2 cut(s) 564, 886
BanII GRGCYC 3 cut(s) 945, 1124, 1137
BarI GAAGNNNNNNTAC 2 cut(s) 186, 218
Bbv12I GWGCWC 1 cut(s) 945
BbvI GCAGC 1 cut(s) 755
BccI CCATC 5 cut(s) 175, 250, 545, 689, 1111
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 938
BclI TGATCA 3 cut(s) 238, 1248, 1299
BcnI CCSGG 1 cut(s) 891
BcoDI GTCTC 1 cut(s) 760
BfaI CTAG 5 cut(s) 383, 1031, 1058, 1146, 1263
BfoI RGCGCY 3 cut(s) 120, 130, 806
BfuAI ACCTGC 1 cut(s) 31
BglI GCCNNNNNGGC 1 cut(s) 562
BisI GCNGC 4 cut(s) 321, 414, 744, 882
BlsI GCNGC 4 cut(s) 322, 415, 745, 883
Bme1390I CCNGG 2 cut(s) 891, 938
BmgT120I GGNCC 5 cut(s) 554, 1120, 1121, 1133, 1134
BmiI GGNNCC 7 cut(s) 101, 566, 888, 1122, 1135, 1136, 1152
BmrFI CCNGG 2 cut(s) 891, 938
BmsI GCATC 1 cut(s) 496
Bpu10I CCTNAGC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 1274
BpuMI CCSGG 1 cut(s) 891
BsaHI GRCGYC 1 cut(s) 416
BsaI GGTCTC 1 cut(s) 760
BsaJI CCNNGG 3 cut(s) 408, 867, 890
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 3 cut(s) 704, 855, 1130
Bse118I RCCGGY 2 cut(s) 394, 435
Bse1I ACTGG 1 cut(s) 747
Bse3DI GCAATG 1 cut(s) 1040
BseBI CCWGG 1 cut(s) 938
BseDI CCNNGG 3 cut(s) 408, 867, 890
BseGI GGATG 6 cut(s) 167, 511, 925, 954, 1105, 1280
BseLI CCNNNNNNNGG 3 cut(s) 704, 855, 1130
BseMI GCAATG 1 cut(s) 1040
BseMII CTCAG 2 cut(s) 996, 1143
BseNI ACTGG 1 cut(s) 747
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 4 cut(s) 1023, 1075, 1124, 1137
BseXI GCAGC 1 cut(s) 755
BseYI CCCAGC 1 cut(s) 1045
BsgI GTGCAG 1 cut(s) 762
Bsh1236I CGCG 1 cut(s) 881
BshFI GGCC 5 cut(s) 556, 866, 1004, 1122, 1135
BshNI GGYRCC 2 cut(s) 564, 886
BshTI ACCGGT 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 945
BsiSI CCGG 3 cut(s) 395, 436, 890
BslFI GGGAC 3 cut(s) 626, 1193, 1289
BslI CCNNNNNNNGG 3 cut(s) 704, 855, 1130
BsmAI GTCTC 1 cut(s) 760
BsmFI GGGAC 3 cut(s) 626, 1193, 1289
BsnI GGCC 5 cut(s) 556, 866, 1004, 1122, 1135
Bso31I GGTCTC 1 cut(s) 760
Bsp120I GGGCCC 2 cut(s) 1120, 1133
Bsp1286I GDGCHC 5 cut(s) 945, 1023, 1075, 1124, 1137
Bsp1407I TGTACA 1 cut(s) 1230
Bsp143I GATC 5 cut(s) 142, 238, 775, 1248, 1299
Bsp19I CCATGG 2 cut(s) 408, 867
BspACI CCGC 6 cut(s) 121, 320, 378, 413, 881, 884
BspANI GGCC 5 cut(s) 556, 866, 1004, 1122, 1135
BspCNI CTCAG 2 cut(s) 995, 1142
BspFNI CGCG 1 cut(s) 881
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 7 cut(s) 101, 566, 888, 1122, 1135, 1136, 1152
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 1 cut(s) 783
BspT107I GGYRCC 2 cut(s) 564, 886
BspTNI GGTCTC 1 cut(s) 760
BsrDI GCAATG 1 cut(s) 1040
BsrFI RCCGGY 2 cut(s) 394, 435
BsrGI TGTACA 1 cut(s) 1230
BsrI ACTGG 1 cut(s) 747
BssAI RCCGGY 2 cut(s) 394, 435
BssECI CCNNGG 3 cut(s) 408, 867, 890
BssMI GATC 5 cut(s) 142, 238, 775, 1248, 1299
BssNI GRCGYC 1 cut(s) 416
BssT1I CCWWGG 2 cut(s) 408, 867
Bst2UI CCWGG 1 cut(s) 938
Bst4CI ACNGT 3 cut(s) 99, 202, 740
Bst6I CTCTTC 1 cut(s) 300
BstACI GRCGYC 1 cut(s) 416
BstAUI TGTACA 1 cut(s) 1230
BstC8I GCNNGC 8 cut(s) 121, 125, 380, 433, 437, 468, 1110, 1325
BstDEI CTNAG 4 cut(s) 74, 982, 1129, 1317
BstDSI CCRYGG 2 cut(s) 408, 867
BstEII GGTNACC 1 cut(s) 844
BstF5I GGATG 6 cut(s) 167, 511, 925, 954, 1105, 1280
BstFNI CGCG 1 cut(s) 881
BstH2I RGCGCY 3 cut(s) 120, 130, 806
BstHHI GCGC 5 cut(s) 119, 129, 455, 805, 881
BstKTI GATC 5 cut(s) 145, 241, 778, 1251, 1302
BstMAI GTCTC 1 cut(s) 760
BstMBI GATC 5 cut(s) 142, 238, 775, 1248, 1299
BstMWI GCNNNNNNNGC 6 cut(s) 114, 133, 452, 562, 589, 1320
BstNI CCWGG 1 cut(s) 938
BstPI GGTNACC 1 cut(s) 844
BstSCI CCNGG 2 cut(s) 889, 936
BstSLI GKGCMC 4 cut(s) 1023, 1075, 1124, 1137
BstUI CGCG 1 cut(s) 881
BstV1I GCAGC 1 cut(s) 755
BstX2I RGATCY 1 cut(s) 775
BstXI CCANNNNNNTGG 1 cut(s) 733
BstYI RGATCY 1 cut(s) 775
BsuRI GGCC 5 cut(s) 556, 866, 1004, 1122, 1135
BtgI CCRYGG 2 cut(s) 408, 867
BtsCI GGATG 6 cut(s) 167, 511, 925, 954, 1105, 1280
BtsI GCAGTG 2 cut(s) 279, 1094
BtsIMutI CAGTG 3 cut(s) 279, 745, 1094
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 8 cut(s) 121, 125, 380, 433, 437, 468, 1110, 1325
CciI TCATGA 1 cut(s) 241
CfoI GCGC 5 cut(s) 119, 129, 455, 805, 881
Cfr10I RCCGGY 2 cut(s) 394, 435
Cfr13I GGNCC 5 cut(s) 554, 1120, 1121, 1133, 1134
CseI GACGC 3 cut(s) 405, 835, 1190
Csp6I GTAC 3 cut(s) 203, 336, 1231
CspAI ACCGGT 1 cut(s) 394
CviAII CATG 6 cut(s) 242, 409, 499, 699, 868, 915
CviQI GTAC 3 cut(s) 203, 336, 1231
DdeI CTNAG 4 cut(s) 74, 982, 1129, 1317
DpnI GATC 5 cut(s) 144, 240, 777, 1250, 1301
DpnII GATC 5 cut(s) 142, 238, 775, 1248, 1299
DraI TTTAAA 1 cut(s) 1170
EaeI YGGCCR 1 cut(s) 1002
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Ecl136II GAGCTC 1 cut(s) 943
Eco130I CCWWGG 2 cut(s) 408, 867
Eco24I GRGCYC 3 cut(s) 945, 1124, 1137
Eco31I GGTCTC 1 cut(s) 760
Eco47III AGCGCT 1 cut(s) 804
Eco53kI GAGCTC 1 cut(s) 943
Eco57I CTGAAG 1 cut(s) 803
Eco91I GGTNACC 1 cut(s) 844
EcoICRI GAGCTC 1 cut(s) 943
EcoO109I RGGNCCY 2 cut(s) 1133, 1134
EcoO65I GGTNACC 1 cut(s) 844
EcoRII CCWGG 1 cut(s) 936
EcoT14I CCWWGG 2 cut(s) 408, 867
EcoT38I GRGCYC 3 cut(s) 945, 1124, 1137
ErhI CCWWGG 2 cut(s) 408, 867
FaeI CATG 6 cut(s) 245, 412, 502, 702, 871, 918
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FaqI GGGAC 3 cut(s) 626, 1193, 1289
FatI CATG 6 cut(s) 241, 408, 498, 698, 867, 914
FauI CCCGC 2 cut(s) 128, 371
FbaI TGATCA 3 cut(s) 238, 1248, 1299
Fnu4HI GCNGC 4 cut(s) 321, 414, 744, 882
FokI GGATG 6 cut(s) 154, 518, 932, 941, 1112, 1267
FriOI GRGCYC 3 cut(s) 945, 1124, 1137
Fsp4HI GCNGC 4 cut(s) 321, 414, 744, 882
FspBI CTAG 5 cut(s) 383, 1031, 1058, 1146, 1263
GlaI GCGC 5 cut(s) 118, 128, 454, 804, 880
GluI GCNGC 4 cut(s) 321, 414, 744, 882
GsaI CCCAGC 1 cut(s) 1049
HaeII RGCGCY 3 cut(s) 120, 130, 806
HaeIII GGCC 5 cut(s) 556, 866, 1004, 1122, 1135
HapII CCGG 3 cut(s) 395, 436, 890
HgaI GACGC 3 cut(s) 405, 835, 1190
HhaI GCGC 5 cut(s) 119, 129, 455, 805, 881
Hin1I GRCGYC 1 cut(s) 416
Hin1II CATG 6 cut(s) 245, 412, 502, 702, 871, 918
Hin6I GCGC 5 cut(s) 117, 127, 453, 803, 879
HinP1I GCGC 5 cut(s) 117, 127, 453, 803, 879
HindIII AAGCTT 2 cut(s) 71, 281
HinfI GANTC 5 cut(s) 8, 90, 248, 665, 1277
HpaII CCGG 3 cut(s) 395, 436, 890
HphI GGTGA 5 cut(s) 248, 373, 965, 1155, 1228
Hpy166II GTNNAC 1 cut(s) 1163
Hpy188I TCNGA 7 cut(s) 7, 142, 172, 421, 634, 811, 985
Hpy188III TCNNGA 6 cut(s) 162, 242, 548, 781, 1011, 1031
Hpy8I GTNNAC 1 cut(s) 1163
Hpy99I CGWCG 1 cut(s) 829
HpyAV CCTTC 3 cut(s) 51, 217, 304
HpyCH4III ACNGT 3 cut(s) 99, 202, 740
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 8 cut(s) 265, 446, 509, 575, 605, 743, 818, 1087
HpyF10VI GCNNNNNNNGC 6 cut(s) 114, 133, 452, 562, 589, 1320
HpyF3I CTNAG 4 cut(s) 74, 982, 1129, 1317
HpySE526I ACGT 1 cut(s) 338
Hsp92I GRCGYC 1 cut(s) 416
Hsp92II CATG 6 cut(s) 245, 412, 502, 702, 871, 918
HspAI GCGC 5 cut(s) 117, 127, 453, 803, 879
KroI GCCGGC 1 cut(s) 435
KroNI GCCGGC 1 cut(s) 437
Ksp22I TGATCA 3 cut(s) 238, 1248, 1299
Kzo9I GATC 5 cut(s) 142, 238, 775, 1248, 1299
LmnI GCTCC 4 cut(s) 113, 707, 894, 940
Lsp1109I GCAGC 1 cut(s) 755
LweI GCATC 1 cut(s) 496
MaeI CTAG 5 cut(s) 383, 1031, 1058, 1146, 1263
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 2 cut(s) 196, 844
MalI GATC 5 cut(s) 144, 240, 777, 1250, 1301
MboI GATC 5 cut(s) 142, 238, 775, 1248, 1299
MboII GAAGA 7 cut(s) 21, 24, 27, 289, 317, 362, 1207
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 5 cut(s) 945, 1023, 1075, 1124, 1137
MlsI TGGCCA 1 cut(s) 1004
MluCI AATT 7 cut(s) 13, 294, 569, 614, 636, 1014, 1210
MluNI TGGCCA 1 cut(s) 1004
MlyI GAGTC 3 cut(s) 99, 674, 1271
MmeI TCCRAC 2 cut(s) 118, 714
Mox20I TGGCCA 1 cut(s) 1004
MreI CGCCGGCG 1 cut(s) 435
MroNI GCCGGC 1 cut(s) 435
MscI TGGCCA 1 cut(s) 1004
MseI TTAA 2 cut(s) 1095, 1169
MslI CAYNNNNRTG 1 cut(s) 959
Msp20I TGGCCA 1 cut(s) 1004
MspI CCGG 3 cut(s) 395, 436, 890
MspR9I CCNGG 2 cut(s) 891, 938
MvaI CCWGG 1 cut(s) 938
MvnI CGCG 1 cut(s) 881
MwoI GCNNNNNNNGC 6 cut(s) 114, 133, 452, 562, 589, 1320
NaeI GCCGGC 1 cut(s) 437
NciI CCSGG 1 cut(s) 891
NcoI CCATGG 2 cut(s) 408, 867
NdeII GATC 5 cut(s) 142, 238, 775, 1248, 1299
NgoMIV GCCGGC 1 cut(s) 435
NlaIII CATG 6 cut(s) 245, 412, 502, 702, 871, 918
NlaIV GGNNCC 7 cut(s) 101, 566, 888, 1122, 1135, 1136, 1152
PagI TCATGA 1 cut(s) 241
PaqCI CACCTGC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 768
PdiI GCCGGC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 8, 248
PinAI ACCGGT 1 cut(s) 394
PkrI GCNGC 4 cut(s) 322, 415, 745, 883
PleI GAGTC 3 cut(s) 98, 673, 1271
PpsI GAGTC 3 cut(s) 98, 673, 1271
Psp124BI GAGCTC 1 cut(s) 945
Psp6I CCWGG 1 cut(s) 936
PspEI GGTNACC 1 cut(s) 844
PspFI CCCAGC 1 cut(s) 1045
PspGI CCWGG 1 cut(s) 936
PspN4I GGNNCC 7 cut(s) 101, 566, 888, 1122, 1135, 1136, 1152
PspOMI GGGCCC 2 cut(s) 1120, 1133
PspPI GGNCC 5 cut(s) 554, 1120, 1121, 1133, 1134
PsuI RGATCY 1 cut(s) 775
RsaI GTAC 3 cut(s) 204, 337, 1232
RsaNI GTAC 3 cut(s) 203, 336, 1231
RseI CAYNNNNRTG 1 cut(s) 959
SacI GAGCTC 1 cut(s) 945
SaqAI TTAA 2 cut(s) 1095, 1169
SatI GCNGC 4 cut(s) 321, 414, 744, 882
Sau3AI GATC 5 cut(s) 142, 238, 775, 1248, 1299
Sau96I GGNCC 5 cut(s) 554, 1120, 1121, 1133, 1134
SchI GAGTC 3 cut(s) 99, 674, 1271
ScrFI CCNGG 2 cut(s) 891, 938
SduI GDGCHC 5 cut(s) 945, 1023, 1075, 1124, 1137
SfaNI GCATC 1 cut(s) 496
SgrAI CRCCGGYG 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 959
SmlI CTYRAG 1 cut(s) 1289
SmoI CTYRAG 1 cut(s) 1289
Sse9I AATT 7 cut(s) 13, 294, 569, 614, 636, 1014, 1210
SsiI CCGC 6 cut(s) 121, 320, 378, 413, 881, 884
SspI AATATT 1 cut(s) 516
SspMI CTAG 5 cut(s) 383, 1031, 1058, 1146, 1263
SstI GAGCTC 1 cut(s) 945
StyD4I CCNGG 2 cut(s) 889, 936
StyI CCWWGG 2 cut(s) 408, 867
TaaI ACNGT 3 cut(s) 99, 202, 740
TaiI ACGT 1 cut(s) 341
TaqI TCGA 4 cut(s) 150, 677, 684, 771
TasI AATT 7 cut(s) 13, 294, 569, 614, 636, 1014, 1210
TatI WGTACW 1 cut(s) 1230
TauI GCSGC 3 cut(s) 323, 416, 884
TfiI GAWTC 2 cut(s) 8, 248
Tru1I TTAA 2 cut(s) 1095, 1169
Tru9I TTAA 2 cut(s) 1095, 1169
TscAI CASTG 3 cut(s) 279, 745, 1094
TseI GCWGC 1 cut(s) 743
TspDTI ATGAA 2 cut(s) 207, 1220
TspRI CASTG 3 cut(s) 279, 745, 1094
XbaI TCTAGA 1 cut(s) 1030
XspI CTAG 5 cut(s) 383, 1031, 1058, 1146, 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.