Prupe.4G060200_v2.0.a1

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
2870818 .. 2873847
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G060200.1

Sequence Viewer

Length: 1347 bp
ATGTCTGATTCTAATTCTACTGCTACCTCTTCTTCTGCTTCTCCTATATGGTTATATTCTTACATCAAGCTTCGGTTTTTCAATCGAATCCGACGCTTCCTGCGCTCCAAAAACGCCCGCAAGCGCCCCACGCCGTCTGATCACTTCGACACATCGTCATCAAGACCCGCCAAAGTTATAAGCAATAACAACGAAGCAACAATGGCAGGGCAAGTTTTGGAGAAGCAGAGTGGCGATGATCATGAGGATGATGTGTTGGGGTTGCAGAGAGCGGTGAAGAAGCTTCACTTTGGAGTTTGTTGGGAAGAGAGGGAGTTGGCGGCTATGGAGATTGGGACGTTGGCTAAAGAAGATGTCAAGGTCAGGAAGTTGGTCGGTGGGCTTGGTGTTATACCGGTTTTGGTGTCCATGGCGGCGTCCGAGGTGGTTGCCCGGCGACGAGCGGCGGTGTCCGCCTTGATTCAGCTTGCTAATGGAACTTACACGAACAAGGCTCTCATGGCGGAGGCAGGAATATTCTCCAAGCTACCAAAAGACATCAACATTCTTGATGAGCCAACAAGGCACCAATTTGCAGAGCTGCTCTTCTTGTTGTCCTCACTTGCAAATACCCAATTTCCTCTGTCCTCTTTAGAAACTCTCCCATTTCTCGTTGGCATTATTGAGTCAGGAACTTCAAGCATTGAAACCAAAGAGACGTGTTTGGGTGCTTTGTACAACCTCTCCACCATGCTGGACAATGCAGGCAATTTGGTCTCCAATGGGGTGGTGGAGGCTCTGTTGAATTTGTCCTCCATCAAAGAGCTTTCTGAGAAAGCTCTAGCCACATTGGGGAATTTGGTTGTGACCCTAATGGGAAAGAAGGCTATGGAGAATAGCGCAGCGGTGCCGGAGAGCTTGATAGAGATTTTGACATGGGAGGACAAACCCAAATGCCAGGAGCTGTCTTCCTACATTCTAATGATTTTAGCTCATCAAAGCTCAGATCAAAGAGTTAAAATGGCCAACTCAGGAATTGTGCCTATACTTCTTGAAGTGGCCTTATTGGGGAGCTCTTTAGCTCAGAAGAGAGCACTAAAACTATTGCAATGGTTCAAGGATGAGAGGCAAGCCAAAATGGGCCCACATTCTGGGCCCCAGACAGCAAGATTTGCAATTGGGTCCCCACTTGGCTCACCTGTAAACCCAAGAGAGGCTCAACAAGGGAAGAAAATGATGAAGAATTTGGTGAAGCAGAGTCTTTACAAGAACATGGAAATGATAACAAGGAGGGCCAGTGCTTCTGGGGACTCATCTAAGCTCAAGTCTCTGATTATCAGCACAAGCTCTAAGAGCTTGCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

449

Amino Acids

48.91

Weight (kDa)

9.45

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013290)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AccB1I GGYRCC 2 cut(s) 564, 886
AccB7I CCANNNNNTGG 1 cut(s) 1130
AccBSI CCGCTC 2 cut(s) 272, 443
AcoI YGGCCR 1 cut(s) 1002
AcsI RAATTY 3 cut(s) 784, 835, 1222
AcyI GRCGYC 1 cut(s) 416
AfaI GTAC 1 cut(s) 716
AfiI CCNNNNNNNGG 4 cut(s) 831, 1047, 1130, 1192
AflIII ACRYGT 1 cut(s) 698
AgeI ACCGGT 1 cut(s) 394
AgsI TTSAA 6 cut(s) 82, 678, 686, 784, 1034, 1096
AhdI GACNNNNNGTC 1 cut(s) 154
AjiI CACGTC 1 cut(s) 699
AjnI CCWGG 1 cut(s) 936
Alw21I GWGCWC 2 cut(s) 1055, 1075
Alw26I GTCTC 3 cut(s) 689, 760, 1311
AlwNI CAGNNNCTG 1 cut(s) 943
AoxI GGCC 5 cut(s) 1002, 1038, 1120, 1133, 1272
ApaI GGGCCC 2 cut(s) 1124, 1137
ApeKI GCWGC 2 cut(s) 580, 881
ApoI RAATTY 3 cut(s) 784, 835, 1222
AsiGI ACCGGT 1 cut(s) 394
AspLEI GCGC 3 cut(s) 105, 126, 881
AspS9I GGNCC 6 cut(s) 1120, 1121, 1133, 1134, 1161, 1272
AsuC2I CCSGG 1 cut(s) 433
AsuHPI GGTGA 3 cut(s) 286, 1167, 1240
AvaII GGWCC 1 cut(s) 1161
BaeGI GKGCMC 2 cut(s) 1124, 1137
BalI TGGCCA 1 cut(s) 1004
BanI GGYRCC 2 cut(s) 564, 886
BanII GRGCYC 3 cut(s) 1055, 1124, 1137
BbsI GAAGAC 1 cut(s) 939
Bbv12I GWGCWC 2 cut(s) 1055, 1075
BbvI GCAGC 2 cut(s) 567, 893
BccI CCATC 1 cut(s) 803
BceAI ACGGC 1 cut(s) 118
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 1 cut(s) 938
BclI TGATCA 2 cut(s) 139, 238
BcnI CCSGG 1 cut(s) 433
BcoDI GTCTC 3 cut(s) 689, 760, 1311
BfaI CTAG 1 cut(s) 821
BfoI RGCGCY 1 cut(s) 127
BglI GCCNNNNNGGC 1 cut(s) 562
BisI GCNGC 5 cut(s) 321, 414, 444, 581, 882
BlsI GCNGC 5 cut(s) 322, 415, 445, 582, 883
Bme1390I CCNGG 2 cut(s) 433, 938
Bme18I GGWCC 1 cut(s) 1161
BmeRI GACNNNNNGTC 1 cut(s) 154
BmgBI CACGTC 1 cut(s) 699
BmgT120I GGNCC 6 cut(s) 1120, 1121, 1133, 1134, 1161, 1272
BmiI GGNNCC 7 cut(s) 566, 888, 1122, 1135, 1136, 1162, 1163
BmrFI CCNGG 2 cut(s) 433, 938
BpiI GAAGAC 1 cut(s) 939
BpuEI CTTGAG 1 cut(s) 1286
BpuMI CCSGG 1 cut(s) 433
BsaHI GRCGYC 1 cut(s) 416
BsaI GGTCTC 1 cut(s) 760
BsaJI CCNNGG 2 cut(s) 408, 420
BsaWI WCCGGW 1 cut(s) 394
BsaXI ACNNNNNCTCC 6 cut(s) 707, 737, 764, 794, 1261, 1291
Bsc4I CCNNNNNNNGG 4 cut(s) 831, 1047, 1130, 1192
Bse118I RCCGGY 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 1275
Bse3DI GCAATG 1 cut(s) 1094
BseBI CCWGG 1 cut(s) 938
BseDI CCNNGG 2 cut(s) 408, 420
BseGI GGATG 2 cut(s) 253, 1105
BseLI CCNNNNNNNGG 4 cut(s) 831, 1047, 1130, 1192
BseMI GCAATG 1 cut(s) 1094
BseMII CTCAG 4 cut(s) 801, 996, 1023, 1076
BseNI ACTGG 1 cut(s) 1275
BseSI GKGCMC 2 cut(s) 1124, 1137
BseXI GCAGC 2 cut(s) 567, 893
BshFI GGCC 5 cut(s) 1004, 1040, 1122, 1135, 1274
BshNI GGYRCC 2 cut(s) 564, 886
BshTI ACCGGT 1 cut(s) 394
BsiHKAI GWGCWC 2 cut(s) 1055, 1075
BsiSI CCGG 3 cut(s) 395, 433, 890
BslFI GGGAC 3 cut(s) 349, 1147, 1301
BslI CCNNNNNNNGG 4 cut(s) 831, 1047, 1130, 1192
BsmAI GTCTC 3 cut(s) 689, 760, 1311
BsmBI CGTCTC 1 cut(s) 689
BsmFI GGGAC 3 cut(s) 349, 1147, 1301
BsnI GGCC 5 cut(s) 1004, 1040, 1122, 1135, 1274
Bso31I GGTCTC 1 cut(s) 760
Bsp120I GGGCCC 2 cut(s) 1120, 1133
Bsp1286I GDGCHC 4 cut(s) 1055, 1075, 1124, 1137
Bsp1407I TGTACA 1 cut(s) 714
Bsp143I GATC 3 cut(s) 139, 238, 985
Bsp19I CCATGG 1 cut(s) 408
BspANI GGCC 5 cut(s) 1004, 1040, 1122, 1135, 1274
BspCNI CTCAG 4 cut(s) 802, 995, 1022, 1075
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 7 cut(s) 566, 888, 1122, 1135, 1136, 1162, 1163
BspQI GCTCTTC 1 cut(s) 590
BspT107I GGYRCC 2 cut(s) 564, 886
BspTNI GGTCTC 1 cut(s) 760
BsrBI CCGCTC 2 cut(s) 272, 443
BsrDI GCAATG 1 cut(s) 1094
BsrFI RCCGGY 1 cut(s) 394
BsrGI TGTACA 1 cut(s) 714
BsrI ACTGG 1 cut(s) 1275
BssAI RCCGGY 1 cut(s) 394
BssECI CCNNGG 2 cut(s) 408, 420
BssMI GATC 3 cut(s) 139, 238, 985
BssNI GRCGYC 1 cut(s) 416
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 938
Bst6I CTCTTC 4 cut(s) 34, 300, 590, 1061
BstACI GRCGYC 1 cut(s) 416
BstAPI GCANNNNNTGC 1 cut(s) 1151
BstAUI TGTACA 1 cut(s) 714
BstC8I GCNNGC 6 cut(s) 118, 122, 468, 745, 1110, 1337
BstDEI CTNAG 6 cut(s) 810, 982, 1009, 1062, 1296, 1329
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 2 cut(s) 253, 1105
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 3 cut(s) 105, 126, 881
BstKTI GATC 3 cut(s) 142, 241, 988
BstMAI GTCTC 3 cut(s) 689, 760, 1311
BstMBI GATC 3 cut(s) 139, 238, 985
BstMWI GCNNNNNNNGC 8 cut(s) 102, 130, 203, 452, 500, 562, 1151, 1332
BstNI CCWGG 1 cut(s) 938
BstSCI CCNGG 2 cut(s) 431, 936
BstSLI GKGCMC 2 cut(s) 1124, 1137
BstV1I GCAGC 2 cut(s) 567, 893
BstV2I GAAGAC 1 cut(s) 939
BstXI CCANNNNNNTGG 2 cut(s) 733, 766
BsuRI GGCC 5 cut(s) 1004, 1040, 1122, 1135, 1274
BtgI CCRYGG 1 cut(s) 408
BtgZI GCGATG 1 cut(s) 249
BtrI CACGTC 1 cut(s) 699
BtsCI GGATG 2 cut(s) 253, 1105
BtsIMutI CAGTG 1 cut(s) 1282
Cac8I GCNNGC 6 cut(s) 118, 122, 468, 745, 1110, 1337
CaiI CAGNNNCTG 1 cut(s) 943
CciI TCATGA 1 cut(s) 241
CfoI GCGC 3 cut(s) 105, 126, 881
Cfr10I RCCGGY 1 cut(s) 394
Cfr13I GGNCC 6 cut(s) 1120, 1121, 1133, 1134, 1161, 1272
CseI GACGC 2 cut(s) 102, 405
Csp6I GTAC 1 cut(s) 715
CspAI ACCGGT 1 cut(s) 394
CviAII CATG 6 cut(s) 242, 409, 499, 730, 915, 1252
CviQI GTAC 1 cut(s) 715
DdeI CTNAG 6 cut(s) 810, 982, 1009, 1062, 1296, 1329
DpnI GATC 3 cut(s) 141, 240, 987
DpnII GATC 3 cut(s) 139, 238, 985
DriI GACNNNNNGTC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 1002
Eam1104I CTCTTC 4 cut(s) 34, 300, 590, 1061
Eam1105I GACNNNNNGTC 1 cut(s) 154
EarI CTCTTC 4 cut(s) 34, 300, 590, 1061
EciI GGCGGA 2 cut(s) 442, 518
Ecl136II GAGCTC 1 cut(s) 1053
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 3 cut(s) 1055, 1124, 1137
Eco31I GGTCTC 1 cut(s) 760
Eco47I GGWCC 1 cut(s) 1161
Eco53kI GAGCTC 1 cut(s) 1053
EcoICRI GAGCTC 1 cut(s) 1053
EcoO109I RGGNCCY 2 cut(s) 1134, 1161
EcoRII CCWGG 1 cut(s) 936
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 3 cut(s) 1055, 1124, 1137
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 1 cut(s) 689
FaeI CATG 6 cut(s) 245, 412, 502, 733, 918, 1255
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FaqI GGGAC 3 cut(s) 349, 1147, 1301
FatI CATG 6 cut(s) 241, 408, 498, 729, 914, 1251
FauI CCCGC 2 cut(s) 125, 175
FbaI TGATCA 2 cut(s) 139, 238
Fnu4HI GCNGC 5 cut(s) 321, 414, 444, 581, 882
FokI GGATG 2 cut(s) 260, 1112
FriOI GRGCYC 3 cut(s) 1055, 1124, 1137
Fsp4HI GCNGC 5 cut(s) 321, 414, 444, 581, 882
FspBI CTAG 1 cut(s) 821
GlaI GCGC 3 cut(s) 104, 125, 880
GluI GCNGC 5 cut(s) 321, 414, 444, 581, 882
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 5 cut(s) 1004, 1040, 1122, 1135, 1274
HapII CCGG 3 cut(s) 395, 433, 890
HgaI GACGC 2 cut(s) 102, 405
HhaI GCGC 3 cut(s) 105, 126, 881
Hin1I GRCGYC 1 cut(s) 416
Hin1II CATG 6 cut(s) 245, 412, 502, 733, 918, 1255
Hin6I GCGC 3 cut(s) 103, 124, 879
HinP1I GCGC 3 cut(s) 103, 124, 879
HindIII AAGCTT 2 cut(s) 68, 281
HinfI GANTC 6 cut(s) 8, 87, 460, 665, 1237, 1289
HpaII CCGG 3 cut(s) 395, 433, 890
HphI GGTGA 3 cut(s) 286, 1167, 1240
Hpy166II GTNNAC 1 cut(s) 1183
Hpy188I TCNGA 8 cut(s) 7, 92, 139, 421, 811, 985, 1065, 1311
Hpy188III TCNNGA 7 cut(s) 162, 242, 364, 548, 669, 1011, 1031
Hpy8I GTNNAC 1 cut(s) 1183
Hpy99I CGWCG 2 cut(s) 96, 441
HpyAV CCTTC 1 cut(s) 856
HpyCH4IV ACGT 2 cut(s) 338, 698
HpyCH4V TGCA 6 cut(s) 265, 575, 605, 743, 1087, 1154
HpyF10VI GCNNNNNNNGC 8 cut(s) 102, 130, 203, 452, 500, 562, 1151, 1332
HpyF3I CTNAG 6 cut(s) 810, 982, 1009, 1062, 1296, 1329
HpySE526I ACGT 2 cut(s) 338, 698
Hsp92I GRCGYC 1 cut(s) 416
Hsp92II CATG 6 cut(s) 245, 412, 502, 733, 918, 1255
HspAI GCGC 3 cut(s) 103, 124, 879
KflI GGGWCCC 1 cut(s) 1161
Ksp22I TGATCA 2 cut(s) 139, 238
Kzo9I GATC 3 cut(s) 139, 238, 985
LguI GCTCTTC 1 cut(s) 590
LmnI GCTCC 3 cut(s) 110, 940, 1050
Lsp1109I GCAGC 2 cut(s) 567, 893
MaeI CTAG 1 cut(s) 821
MaeII ACGT 2 cut(s) 338, 698
MaeIII GTNAC 1 cut(s) 844
MalI GATC 3 cut(s) 141, 240, 987
MbiI CCGCTC 2 cut(s) 272, 443
MboI GATC 3 cut(s) 139, 238, 985
MfeI CAATTG 1 cut(s) 1155
MhlI GDGCHC 4 cut(s) 1055, 1075, 1124, 1137
MlsI TGGCCA 1 cut(s) 1004
MluCI AATT 9 cut(s) 13, 569, 614, 748, 784, 835, 1014, 1155, 1222
MluNI TGGCCA 1 cut(s) 1004
MlyI GAGTC 3 cut(s) 674, 1246, 1283
MmeI TCCRAC 1 cut(s) 115
Mox20I TGGCCA 1 cut(s) 1004
MscI TGGCCA 1 cut(s) 1004
MseI TTAA 1 cut(s) 996
MslI CAYNNNNRTG 3 cut(s) 246, 959, 1256
Msp20I TGGCCA 1 cut(s) 1004
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 3 cut(s) 395, 433, 890
MspR9I CCNGG 2 cut(s) 433, 938
MunI CAATTG 1 cut(s) 1155
MvaI CCWGG 1 cut(s) 938
MwoI GCNNNNNNNGC 8 cut(s) 102, 130, 203, 452, 500, 562, 1151, 1332
NciI CCSGG 1 cut(s) 433
NcoI CCATGG 1 cut(s) 408
NdeII GATC 3 cut(s) 139, 238, 985
NlaIII CATG 6 cut(s) 245, 412, 502, 733, 918, 1255
NlaIV GGNNCC 7 cut(s) 566, 888, 1122, 1135, 1136, 1162, 1163
NmuCI GTSAC 1 cut(s) 844
PagI TCATGA 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 590
PfeI GAWTC 3 cut(s) 8, 87, 460
PflMI CCANNNNNTGG 1 cut(s) 1130
PinAI ACCGGT 1 cut(s) 394
PkrI GCNGC 5 cut(s) 322, 415, 445, 582, 883
PleI GAGTC 3 cut(s) 673, 1245, 1283
PpsI GAGTC 3 cut(s) 673, 1245, 1283
PpuMI RGGWCCY 1 cut(s) 1161
PsiI TTATAA 1 cut(s) 179
Psp124BI GAGCTC 1 cut(s) 1055
Psp5II RGGWCCY 1 cut(s) 1161
Psp6I CCWGG 1 cut(s) 936
PspGI CCWGG 1 cut(s) 936
PspN4I GGNNCC 7 cut(s) 566, 888, 1122, 1135, 1136, 1162, 1163
PspOMI GGGCCC 2 cut(s) 1120, 1133
PspPI GGNCC 6 cut(s) 1120, 1121, 1133, 1134, 1161, 1272
PspPPI RGGWCCY 1 cut(s) 1161
PstNI CAGNNNCTG 1 cut(s) 943
RsaI GTAC 1 cut(s) 716
RsaNI GTAC 1 cut(s) 715
RseI CAYNNNNRTG 3 cut(s) 246, 959, 1256
SacI GAGCTC 1 cut(s) 1055
SapI GCTCTTC 1 cut(s) 590
SaqAI TTAA 1 cut(s) 996
SatI GCNGC 5 cut(s) 321, 414, 444, 581, 882
Sau3AI GATC 3 cut(s) 139, 238, 985
Sau96I GGNCC 6 cut(s) 1120, 1121, 1133, 1134, 1161, 1272
SchI GAGTC 3 cut(s) 674, 1246, 1283
ScrFI CCNGG 2 cut(s) 433, 938
SduI GDGCHC 4 cut(s) 1055, 1075, 1124, 1137
SinI GGWCC 1 cut(s) 1161
SmiMI CAYNNNNRTG 3 cut(s) 246, 959, 1256
SmlI CTYRAG 1 cut(s) 1301
SmoI CTYRAG 1 cut(s) 1301
Sse9I AATT 9 cut(s) 13, 569, 614, 748, 784, 835, 1014, 1155, 1222
SspI AATATT 1 cut(s) 516
SspMI CTAG 1 cut(s) 821
SstI GAGCTC 1 cut(s) 1055
StyD4I CCNGG 2 cut(s) 431, 936
StyI CCWWGG 1 cut(s) 408
TaiI ACGT 2 cut(s) 341, 701
TaqI TCGA 2 cut(s) 85, 147
TasI AATT 9 cut(s) 13, 569, 614, 748, 784, 835, 1014, 1155, 1222
TatI WGTACW 1 cut(s) 714
TauI GCSGC 3 cut(s) 323, 416, 446
TfiI GAWTC 3 cut(s) 8, 87, 460
Tru1I TTAA 1 cut(s) 996
Tru9I TTAA 1 cut(s) 996
TscAI CASTG 1 cut(s) 1282
TseFI GTSAC 1 cut(s) 844
TseI GCWGC 2 cut(s) 580, 881
Tsp45I GTSAC 1 cut(s) 844
TspDTI ATGAA 1 cut(s) 1232
TspRI CASTG 1 cut(s) 1282
Van91I CCANNNNNTGG 1 cut(s) 1130
VpaK11BI GGWCC 1 cut(s) 1161
XapI RAATTY 3 cut(s) 784, 835, 1222
XcmI CCANNNNNNNNNTGG 1 cut(s) 766
XspI CTAG 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.