pycom05g27980

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0013290
Physical Location & Seq
Reverse (-)
28824024 .. 28826570
2547 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g27980.2

Sequence Viewer

Length: 1035 bp
ATGTCTGATTCTAATTCTACACCTGCTTCTTCTTCTTCTCCTTCTCCTCTATGGGTATATTCTTACATAAAGCTTAGGTTTTTCAACCGCGTCCGACGGTTCCTACGCTCCAAAAGCGCCCGCAAGCGCCCTACGCCATCCGATCACTTCGACACATCATCAAGACCCTCCAAAGTTGTAAGCAATAGTAATGAAGTAACAGTACGACAAGTCGTTATGGAGAAGGAGAGTGGTGGTGATCATGAGGATTCTGTGATGGGATTGCAAAGGGCAGTGAAGAAGCTTCACTTTGGAATTAGTTGGGAAGAGAAGGAGTTGGCGGCTATGGAGATTGGTACGTTGGCTAAAGAAGATGTCAAGGTGAGGAAGCTGGTGGGCGGGCTAGGTATTATACCGGTTTTGGTGTCCATGGCGGCTTCAGAGGTGGTTGCTCGCCGGCGAATTGCGGTTTGCGCCTTGATTGAGCTTGCTAATGGAACTTACACGAACAAGGCTTTCATGGTGGAGGCAGGAATATTCTCAAAGCTACAAAACGACATCAACATTCTTGATGAGCCAACAAGGCACCAATTTGCAGAGTTGCTCTTGTTGTTGTCCTCACTTGCAAATACCCAATTCCCTCTGTCCTCATCAGAAATTGTCCCGTTTCTTGTTGGCATTATTGAGTCAAGCACTTCGACCATCGAAACCAAAGAGCCATGTTTGGGAGCTTTGTTCAACCTCTCCACAATGTTGGACAGTGCAGCGAGTTTGGTCTCTAACGGGGTGGTCGAGGCTCTCCTGAAGCTATCCACGACCAAAGCGCTTTCTGAAAAAGCACTTGCGACGCTTGGGAACTTGGTGGTTACCCTAATGGGGAAAAAGGCCATGGAAAATAGCGCGGCGGTGCCGGGGAGCTTGATAGAGATTTTGACATGGGATGAGAAGCCCAAATGCCAGGAGCTCTCTTGCTACATCCTAATGATTTTAGCTCACCAAAGCTCTACGATCAAAGGGAAAAAATGGCCAAGTCAGGAATTGTGCCTATACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

37.66

Weight (kDa)

8.69

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013290)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27430
fragaria_vesca FvH4_3g07900
malus_domestica MD05G1302200.v1.1 MD10G1280900.v1.1
prunus_persica Prupe.4G060200_v2.0.a1
pyrus_communis pycom05g27980
rosa_chinensis RchiOBHm_Chr5g0010651
rosa_laevigata RLG00000031769
rosa_multiflora Rmu_co8124782.1_g000001 Rmu_sc0006103.1_g000004 Rmu_sc0014635.1_g000002
rosa_roxburghii Rroxscaffold_1G00065720
rosa_rugosa Rorug04G0451500
rosa_samantha Rh5AG083100 Rh5BG078400 Rh5CG091100 Rh5DG078500
rosa_wichuraiana Rw0G000670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 31
AccB1I GGYRCC 2 cut(s) 564, 886
AccII CGCG 2 cut(s) 90, 881
AciI CCGC 8 cut(s) 88, 121, 320, 378, 413, 446, 881, 884
AcoI YGGCCR 1 cut(s) 1004
AcuI CTGAAG 2 cut(s) 402, 803
AfaI GTAC 2 cut(s) 204, 337
AfeI AGCGCT 1 cut(s) 804
AfiI CCNNNNNNNGG 2 cut(s) 704, 855
AgeI ACCGGT 1 cut(s) 394
AgsI TTSAA 2 cut(s) 85, 718
AjnI CCWGG 1 cut(s) 936
Alw21I GWGCWC 1 cut(s) 945
Alw26I GTCTC 1 cut(s) 760
Aor51HI AGCGCT 1 cut(s) 804
AoxI GGCC 2 cut(s) 864, 1004
ApeKI GCWGC 1 cut(s) 743
AsiGI ACCGGT 1 cut(s) 394
AspLEI GCGC 5 cut(s) 119, 129, 455, 805, 881
AsuC2I CCSGG 1 cut(s) 891
AsuHPI GGTGA 3 cut(s) 248, 373, 965
BalI TGGCCA 1 cut(s) 1006
BanI GGYRCC 2 cut(s) 564, 886
BanII GRGCYC 1 cut(s) 945
BarI GAAGNNNNNNTAC 2 cut(s) 186, 218
Bbv12I GWGCWC 1 cut(s) 945
BbvI GCAGC 1 cut(s) 755
BccI CCATC 3 cut(s) 145, 250, 689
BciT130I CCWGG 1 cut(s) 938
BclI TGATCA 1 cut(s) 238
BcnI CCSGG 1 cut(s) 891
BcoDI GTCTC 1 cut(s) 760
BfaI CTAG 2 cut(s) 383, 1033
BfoI RGCGCY 3 cut(s) 120, 130, 806
BfuAI ACCTGC 1 cut(s) 31
BglI GCCNNNNNGGC 1 cut(s) 562
BisI GCNGC 4 cut(s) 321, 414, 744, 882
BlsI GCNGC 4 cut(s) 322, 415, 745, 883
Bme1390I CCNGG 2 cut(s) 891, 938
BmiI GGNNCC 3 cut(s) 101, 566, 888
BmrFI CCNGG 2 cut(s) 891, 938
Bpu10I CCTNAGC 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 891
BsaI GGTCTC 1 cut(s) 760
BsaJI CCNNGG 3 cut(s) 408, 867, 890
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 2 cut(s) 704, 855
Bse118I RCCGGY 2 cut(s) 394, 435
BseBI CCWGG 1 cut(s) 938
BseDI CCNNGG 3 cut(s) 408, 867, 890
BseGI GGATG 3 cut(s) 137, 925, 954
BseLI CCNNNNNNNGG 2 cut(s) 704, 855
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 755
BsgI GTGCAG 1 cut(s) 762
Bsh1236I CGCG 2 cut(s) 90, 881
BshFI GGCC 2 cut(s) 866, 1006
BshNI GGYRCC 2 cut(s) 564, 886
BshTI ACCGGT 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 945
BsiSI CCGG 3 cut(s) 395, 436, 890
BslFI GGGAC 1 cut(s) 626
BslI CCNNNNNNNGG 2 cut(s) 704, 855
BsmAI GTCTC 1 cut(s) 760
BsmFI GGGAC 1 cut(s) 626
BsnI GGCC 2 cut(s) 866, 1006
Bso31I GGTCTC 1 cut(s) 760
Bsp1286I GDGCHC 1 cut(s) 945
Bsp143I GATC 3 cut(s) 142, 238, 987
Bsp19I CCATGG 2 cut(s) 408, 867
BspACI CCGC 8 cut(s) 88, 121, 320, 378, 413, 446, 881, 884
BspANI GGCC 2 cut(s) 866, 1006
BspFNI CGCG 2 cut(s) 90, 881
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 3 cut(s) 101, 566, 888
BspMI ACCTGC 1 cut(s) 31
BspT107I GGYRCC 2 cut(s) 564, 886
BspTNI GGTCTC 1 cut(s) 760
BsrFI RCCGGY 2 cut(s) 394, 435
BssAI RCCGGY 2 cut(s) 394, 435
BssECI CCNNGG 3 cut(s) 408, 867, 890
BssMI GATC 3 cut(s) 142, 238, 987
BssT1I CCWWGG 2 cut(s) 408, 867
Bst2UI CCWGG 1 cut(s) 938
Bst4CI ACNGT 3 cut(s) 99, 202, 740
Bst6I CTCTTC 1 cut(s) 300
BstC8I GCNNGC 6 cut(s) 121, 125, 380, 433, 437, 468
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 2 cut(s) 408, 867
BstEII GGTNACC 1 cut(s) 844
BstF5I GGATG 3 cut(s) 137, 925, 954
BstFNI CGCG 2 cut(s) 90, 881
BstH2I RGCGCY 3 cut(s) 120, 130, 806
BstHHI GCGC 5 cut(s) 119, 129, 455, 805, 881
BstKTI GATC 3 cut(s) 145, 241, 990
BstMAI GTCTC 1 cut(s) 760
BstMBI GATC 3 cut(s) 142, 238, 987
BstMWI GCNNNNNNNGC 4 cut(s) 114, 133, 452, 562
BstNI CCWGG 1 cut(s) 938
BstPI GGTNACC 1 cut(s) 844
BstSCI CCNGG 2 cut(s) 889, 936
BstUI CGCG 2 cut(s) 90, 881
BstV1I GCAGC 1 cut(s) 755
BstXI CCANNNNNNTGG 1 cut(s) 733
BsuRI GGCC 2 cut(s) 866, 1006
BtgI CCRYGG 2 cut(s) 408, 867
BtsCI GGATG 3 cut(s) 137, 925, 954
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 2 cut(s) 279, 745
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 6 cut(s) 121, 125, 380, 433, 437, 468
CciI TCATGA 1 cut(s) 241
CfoI GCGC 5 cut(s) 119, 129, 455, 805, 881
Cfr10I RCCGGY 2 cut(s) 394, 435
CseI GACGC 2 cut(s) 79, 835
Csp6I GTAC 2 cut(s) 203, 336
CspAI ACCGGT 1 cut(s) 394
CviAII CATG 6 cut(s) 242, 409, 499, 699, 868, 915
CviQI GTAC 2 cut(s) 203, 336
DdeI CTNAG 1 cut(s) 74
DpnI GATC 3 cut(s) 144, 240, 989
DpnII GATC 3 cut(s) 142, 238, 987
EaeI YGGCCR 1 cut(s) 1004
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Ecl136II GAGCTC 1 cut(s) 943
Eco130I CCWWGG 2 cut(s) 408, 867
Eco24I GRGCYC 1 cut(s) 945
Eco31I GGTCTC 1 cut(s) 760
Eco47III AGCGCT 1 cut(s) 804
Eco53kI GAGCTC 1 cut(s) 943
Eco57I CTGAAG 2 cut(s) 402, 803
Eco91I GGTNACC 1 cut(s) 844
EcoICRI GAGCTC 1 cut(s) 943
EcoO65I GGTNACC 1 cut(s) 844
EcoRII CCWGG 1 cut(s) 936
EcoT14I CCWWGG 2 cut(s) 408, 867
EcoT38I GRGCYC 1 cut(s) 945
ErhI CCWWGG 2 cut(s) 408, 867
FaeI CATG 6 cut(s) 245, 412, 502, 702, 871, 918
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FaqI GGGAC 1 cut(s) 626
FatI CATG 6 cut(s) 241, 408, 498, 698, 867, 914
FauI CCCGC 2 cut(s) 128, 371
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 4 cut(s) 321, 414, 744, 882
FokI GGATG 3 cut(s) 124, 932, 941
FriOI GRGCYC 1 cut(s) 945
Fsp4HI GCNGC 4 cut(s) 321, 414, 744, 882
FspBI CTAG 2 cut(s) 383, 1033
GlaI GCGC 5 cut(s) 118, 128, 454, 804, 880
GluI GCNGC 4 cut(s) 321, 414, 744, 882
HaeII RGCGCY 3 cut(s) 120, 130, 806
HaeIII GGCC 2 cut(s) 866, 1006
HapII CCGG 3 cut(s) 395, 436, 890
HgaI GACGC 2 cut(s) 79, 835
HhaI GCGC 5 cut(s) 119, 129, 455, 805, 881
Hin1II CATG 6 cut(s) 245, 412, 502, 702, 871, 918
Hin6I GCGC 5 cut(s) 117, 127, 453, 803, 879
HinP1I GCGC 5 cut(s) 117, 127, 453, 803, 879
HindIII AAGCTT 2 cut(s) 71, 281
HinfI GANTC 3 cut(s) 8, 248, 665
HpaII CCGG 3 cut(s) 395, 436, 890
HphI GGTGA 3 cut(s) 248, 373, 965
Hpy188I TCNGA 6 cut(s) 7, 95, 142, 421, 634, 811
Hpy188III TCNNGA 5 cut(s) 162, 242, 548, 781, 1013
Hpy99I CGWCG 2 cut(s) 99, 829
HpyAV CCTTC 3 cut(s) 51, 217, 304
HpyCH4III ACNGT 3 cut(s) 99, 202, 740
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 4 cut(s) 265, 575, 605, 743
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 133, 452, 562
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 6 cut(s) 245, 412, 502, 702, 871, 918
HspAI GCGC 5 cut(s) 117, 127, 453, 803, 879
KroI GCCGGC 1 cut(s) 435
KroNI GCCGGC 1 cut(s) 437
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 142, 238, 987
LmnI GCTCC 4 cut(s) 113, 707, 894, 940
Lsp1109I GCAGC 1 cut(s) 755
MaeI CTAG 2 cut(s) 383, 1033
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 2 cut(s) 196, 844
MalI GATC 3 cut(s) 144, 240, 989
MboI GATC 3 cut(s) 142, 238, 987
MboII GAAGA 6 cut(s) 21, 24, 27, 289, 317, 362
MhlI GDGCHC 1 cut(s) 945
MlsI TGGCCA 1 cut(s) 1006
MluCI AATT 7 cut(s) 13, 294, 441, 569, 614, 636, 1016
MluNI TGGCCA 1 cut(s) 1006
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 2 cut(s) 118, 714
Mox20I TGGCCA 1 cut(s) 1006
MreI CGCCGGCG 1 cut(s) 435
MroNI GCCGGC 1 cut(s) 435
MscI TGGCCA 1 cut(s) 1006
MslI CAYNNNNRTG 1 cut(s) 959
Msp20I TGGCCA 1 cut(s) 1006
MspI CCGG 3 cut(s) 395, 436, 890
MspR9I CCNGG 2 cut(s) 891, 938
MvaI CCWGG 1 cut(s) 938
MvnI CGCG 2 cut(s) 90, 881
MwoI GCNNNNNNNGC 4 cut(s) 114, 133, 452, 562
NaeI GCCGGC 1 cut(s) 437
NciI CCSGG 1 cut(s) 891
NcoI CCATGG 2 cut(s) 408, 867
NdeII GATC 3 cut(s) 142, 238, 987
NgoMIV GCCGGC 1 cut(s) 435
NlaIII CATG 6 cut(s) 245, 412, 502, 702, 871, 918
NlaIV GGNNCC 3 cut(s) 101, 566, 888
PagI TCATGA 1 cut(s) 241
PaqCI CACCTGC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 768
PdiI GCCGGC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 8, 248
PinAI ACCGGT 1 cut(s) 394
PkrI GCNGC 4 cut(s) 322, 415, 745, 883
PleI GAGTC 1 cut(s) 673
PpsI GAGTC 1 cut(s) 673
Psp124BI GAGCTC 1 cut(s) 945
Psp6I CCWGG 1 cut(s) 936
PspEI GGTNACC 1 cut(s) 844
PspGI CCWGG 1 cut(s) 936
PspN4I GGNNCC 3 cut(s) 101, 566, 888
RsaI GTAC 2 cut(s) 204, 337
RsaNI GTAC 2 cut(s) 203, 336
RseI CAYNNNNRTG 1 cut(s) 959
SacI GAGCTC 1 cut(s) 945
SatI GCNGC 4 cut(s) 321, 414, 744, 882
Sau3AI GATC 3 cut(s) 142, 238, 987
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 2 cut(s) 891, 938
SduI GDGCHC 1 cut(s) 945
SgrAI CRCCGGYG 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 959
Sse9I AATT 7 cut(s) 13, 294, 441, 569, 614, 636, 1016
SsiI CCGC 8 cut(s) 88, 121, 320, 378, 413, 446, 881, 884
SspI AATATT 1 cut(s) 516
SspMI CTAG 2 cut(s) 383, 1033
SstI GAGCTC 1 cut(s) 945
StyD4I CCNGG 2 cut(s) 889, 936
StyI CCWWGG 2 cut(s) 408, 867
TaaI ACNGT 3 cut(s) 99, 202, 740
TaiI ACGT 1 cut(s) 341
TaqI TCGA 4 cut(s) 150, 677, 684, 771
TasI AATT 7 cut(s) 13, 294, 441, 569, 614, 636, 1016
TauI GCSGC 3 cut(s) 323, 416, 884
TfiI GAWTC 2 cut(s) 8, 248
TscAI CASTG 2 cut(s) 279, 745
TseI GCWGC 1 cut(s) 743
TspDTI ATGAA 2 cut(s) 207, 487
TspRI CASTG 2 cut(s) 279, 745
XspI CTAG 2 cut(s) 383, 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.