Rw0G000670

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00020
OG0013290
Physical Location & Seq
Reverse (-)
95674 .. 98725
3052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000670.1

Sequence Viewer

Length: 1299 bp
ATGTCTGACTCTACTGCATCGTCTTCTTCTTCTCCTCCTAAATGGCTATATTCATATATAAAGCTTCGCTTTTTCAATCGCATCCGGAGGTTCCTGCGCTCCAAGAAAAGTAACCGGAAGAGGAACACGACGTCGTCTGATTCTCACCTCGTAGATACGTCGAGCTTGAGACCGGTCAAGGTTATGGTGAAGGAGAGCAGTAGTGATCATGAGGATGATGGTTTGGGGTTGCAGAGGGCGGTGAAGAAGCTTCACTTTGGCAGCTGGGAAGAGAAGGAGTTGGCGGCTGAGGAGATTGGGACGTTGGCCATGGATGACGTCAAGGTGAGGAAATTGGTAGGTGGACTCGGGATTATACCAGTGTTGGTGTCCATGGCGGCGTCGGAGGTGGTTGATCGCCGGCGAGTGGCCGTTTCCGCCTTGGTTCAGCTTGCCAATGGAACTTACACGAACAAGGCTCTCATGGTTGAGGCAGGAATCTTCTCCAAACTACCAAAAGACATCAACATTCTCGATGAGCCAACAAGGCATCAATTTGCAGAACTGCTCATGTTGTTATCTTCACTTGCAAATACCCCATTTCCTCTGCCCTCATCGGAAATTGTCCCGTTTCTAGTTGGCATTCTAGAGTCAGATTCGACCAATGTCGAAACCAAACAGTCATGTTTGGGTACACTTCACAACCTATCCACCATGTTGGACAATGCAGGAGATTTAGTCTCCAATGGGGTGGTGGACACACTCTTGAAATTGTCTTCCGATAAAGAAATCTCCGAGAAAGCTCTTGCAACATTGGGGAACTTGGTTGTGACCTTAATGGGGAAGAAGGCTATGGAAAATAGTCCTCTGGTCCCAGAGAGTTTGATAGAAATTTTGACATGGGATGAAAAATCCAAATGCCAGGAACTTTCAAGCTACATTCTAATGATTTTAGCTCATCAAAGCTCAGACCAAAGAGCGAAAATGGCCAAGTCTGGAATTGTGCCTGTACTTCTTGAAGTGGCATTATTGGGTAGCTCTCTAGCTCAGAAAAGAGCGCTAAAACTGTTGCAGTGGTTCAAGGACGAAAGGCAAGCGAAAATGGGCCCCCATTCCGGGCCTCAGACTGCAAGGTTCGCATTCGGTTCACCTGTGAATCCACTGGAGGCTCAACAAGGGAAGAAGATGATGAAGAATTTGGTGAAACAGAGTTTACATAAGAATATGGAGATGATAACGCGGCGGGCGAGTGCTTCTGGAGACTCTTCTAAGATTAAGGCTTTGATTATTAGCACAAGCTCTAAGAGTTTGCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

432

Amino Acids

47.41

Weight (kDa)

9.46

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 198 - 339 4.9e-08 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013290)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27430
fragaria_vesca FvH4_3g07900
malus_domestica MD05G1302200.v1.1 MD10G1280900.v1.1
prunus_persica Prupe.4G060200_v2.0.a1
pyrus_communis pycom05g27980
rosa_chinensis RchiOBHm_Chr5g0010651
rosa_laevigata RLG00000031769
rosa_multiflora Rmu_co8124782.1_g000001 Rmu_sc0006103.1_g000004 Rmu_sc0014635.1_g000002
rosa_roxburghii Rroxscaffold_1G00065720
rosa_rugosa Rorug04G0451500
rosa_samantha Rh5AG083100 Rh5BG078400 Rh5CG091100 Rh5DG078500
rosa_wichuraiana Rw0G000670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 134, 321
AccII CGCG 1 cut(s) 1219
AccIII TCCGGA 1 cut(s) 84
AciI CCGC 6 cut(s) 239, 284, 377, 417, 1219, 1222
AcoI YGGCCR 3 cut(s) 306, 408, 966
AcsI RAATTY 2 cut(s) 870, 1174
AcyI GRCGYC 3 cut(s) 131, 318, 380
AfaI GTAC 2 cut(s) 673, 990
AfeI AGCGCT 1 cut(s) 1038
AfiI CCNNNNNNNGG 4 cut(s) 406, 819, 1094, 1095
AgeI ACCGGT 1 cut(s) 172
AgsI TTSAA 5 cut(s) 76, 748, 912, 998, 1060
AjnI CCWGG 1 cut(s) 900
Alw26I GTCTC 3 cut(s) 163, 724, 1233
Ama87I CYCGRG 1 cut(s) 347
Aor13HI TCCGGA 1 cut(s) 84
Aor51HI AGCGCT 1 cut(s) 1038
AoxI GGCC 5 cut(s) 306, 408, 966, 1084, 1097
ApaI GGGCCC 1 cut(s) 1088
ApeKI GCWGC 1 cut(s) 261
ApoI RAATTY 2 cut(s) 870, 1174
AsiGI ACCGGT 1 cut(s) 172
AspLEI GCGC 2 cut(s) 99, 1039
AspS9I GGNCC 4 cut(s) 850, 1084, 1085, 1097
AsuC2I CCSGG 1 cut(s) 1096
AsuHPI GGTGA 6 cut(s) 137, 199, 253, 337, 1119, 1192
AvaI CYCGRG 1 cut(s) 347
AvaII GGWCC 1 cut(s) 850
BaeGI GKGCMC 1 cut(s) 1088
BalI TGGCCA 2 cut(s) 308, 968
BanII GRGCYC 1 cut(s) 1088
BbsI GAAGAC 2 cut(s) 15, 747
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 273
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 1 cut(s) 902
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 1 cut(s) 1096
BcoDI GTCTC 3 cut(s) 163, 724, 1233
BfaI CTAG 3 cut(s) 614, 626, 1022
BfoI RGCGCY 1 cut(s) 1040
BglI GCCNNNNNGGC 1 cut(s) 526
BisI GCNGC 4 cut(s) 262, 285, 378, 1220
BlsI GCNGC 4 cut(s) 263, 286, 379, 1221
Bme1390I CCNGG 2 cut(s) 902, 1096
Bme18I GGWCC 1 cut(s) 850
BmeT110I CYCGRG 1 cut(s) 347
BmgT120I GGNCC 4 cut(s) 850, 1084, 1085, 1097
BmiI GGNNCC 4 cut(s) 92, 852, 1086, 1087
BmrFI CCNGG 2 cut(s) 902, 1096
BmsI GCATC 3 cut(s) 26, 90, 538
BoxI GACNNNNGTC 1 cut(s) 644
BpiI GAAGAC 2 cut(s) 15, 747
BpmI CTGGAG 2 cut(s) 1163, 1257
Bpu10I CCTNAGC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 1096
BsaHI GRCGYC 3 cut(s) 131, 318, 380
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 3 cut(s) 309, 372, 420
BsaWI WCCGGW 3 cut(s) 84, 114, 172
BsaXI ACNNNNNCTCC 2 cut(s) 702, 732
Bsc4I CCNNNNNNNGG 4 cut(s) 406, 819, 1094, 1095
Bse118I RCCGGY 2 cut(s) 172, 399
Bse1I ACTGG 2 cut(s) 359, 1146
BseAI TCCGGA 1 cut(s) 84
BseBI CCWGG 1 cut(s) 902
BseDI CCNNGG 3 cut(s) 309, 372, 420
BseGI GGATG 4 cut(s) 81, 220, 319, 889
BseLI CCNNNNNNNGG 4 cut(s) 406, 819, 1094, 1095
BseMII CTCAG 4 cut(s) 279, 960, 1040, 1115
BseNI ACTGG 2 cut(s) 359, 1146
BseRI GAGGAG 2 cut(s) 24, 305
BseSI GKGCMC 1 cut(s) 1088
BseXI GCAGC 1 cut(s) 273
BseYI CCCAGC 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 1219
BshFI GGCC 5 cut(s) 308, 410, 968, 1086, 1099
BshTI ACCGGT 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 5 cut(s) 85, 115, 173, 400, 1095
BslFI GGGAC 3 cut(s) 313, 590, 836
BslI CCNNNNNNNGG 4 cut(s) 406, 819, 1094, 1095
BsmAI GTCTC 3 cut(s) 163, 724, 1233
BsmFI GGGAC 3 cut(s) 313, 590, 836
BsmI GAATGC 2 cut(s) 621, 1118
BsnI GGCC 5 cut(s) 308, 410, 968, 1086, 1099
Bso31I GGTCTC 1 cut(s) 163
BsoBI CYCGRG 1 cut(s) 347
Bsp120I GGGCCC 1 cut(s) 1084
Bsp1286I GDGCHC 1 cut(s) 1088
Bsp13I TCCGGA 1 cut(s) 84
Bsp143I GATC 2 cut(s) 205, 394
Bsp19I CCATGG 2 cut(s) 309, 372
BspACI CCGC 6 cut(s) 239, 284, 377, 417, 1219, 1222
BspANI GGCC 5 cut(s) 308, 410, 968, 1086, 1099
BspCNI CTCAG 4 cut(s) 280, 959, 1039, 1114
BspEI TCCGGA 1 cut(s) 84
BspFNI CGCG 1 cut(s) 1219
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 4 cut(s) 92, 852, 1086, 1087
BspTNI GGTCTC 1 cut(s) 163
BsrFI RCCGGY 2 cut(s) 172, 399
BsrI ACTGG 2 cut(s) 359, 1146
BssAI RCCGGY 2 cut(s) 172, 399
BssECI CCNNGG 3 cut(s) 309, 372, 420
BssMI GATC 2 cut(s) 205, 394
BssNI GRCGYC 3 cut(s) 131, 318, 380
BssT1I CCWWGG 3 cut(s) 309, 372, 420
Bst2UI CCWGG 1 cut(s) 902
Bst4CI ACNGT 2 cut(s) 660, 1047
Bst6I CTCTTC 3 cut(s) 113, 264, 1249
BstACI GRCGYC 3 cut(s) 131, 318, 380
BstC8I GCNNGC 4 cut(s) 401, 432, 1074, 1224
BstDEI CTNAG 6 cut(s) 288, 946, 1026, 1101, 1248, 1281
BstDSI CCRYGG 2 cut(s) 309, 372
BstF5I GGATG 4 cut(s) 81, 220, 319, 889
BstFNI CGCG 1 cut(s) 1219
BstH2I RGCGCY 1 cut(s) 1040
BstHHI GCGC 2 cut(s) 99, 1039
BstKTI GATC 2 cut(s) 208, 397
BstMAI GTCTC 3 cut(s) 163, 724, 1233
BstMBI GATC 2 cut(s) 205, 394
BstMWI GCNNNNNNNGC 4 cut(s) 416, 526, 965, 1115
BstNI CCWGG 1 cut(s) 902
BstPAI GACNNNNGTC 1 cut(s) 644
BstSCI CCNGG 2 cut(s) 900, 1094
BstSLI GKGCMC 1 cut(s) 1088
BstUI CGCG 1 cut(s) 1219
BstV1I GCAGC 1 cut(s) 273
BstV2I GAAGAC 2 cut(s) 15, 747
BstXI CCANNNNNNTGG 2 cut(s) 697, 730
BsuRI GGCC 5 cut(s) 308, 410, 968, 1086, 1099
BtgI CCRYGG 2 cut(s) 309, 372
BtsCI GGATG 4 cut(s) 81, 220, 319, 889
BtsI GCAGTG 1 cut(s) 1058
BtsIMutI CAGTG 3 cut(s) 366, 1058, 1139
Cac8I GCNNGC 4 cut(s) 401, 432, 1074, 1224
CciI TCATGA 1 cut(s) 208
CfoI GCGC 2 cut(s) 99, 1039
Cfr10I RCCGGY 2 cut(s) 172, 399
Cfr13I GGNCC 4 cut(s) 850, 1084, 1085, 1097
CseI GACGC 1 cut(s) 369
Csp6I GTAC 2 cut(s) 672, 989
CspAI ACCGGT 1 cut(s) 172
CviAII CATG 8 cut(s) 209, 310, 373, 463, 550, 663, 694, 879
CviQI GTAC 2 cut(s) 672, 989
DdeI CTNAG 6 cut(s) 288, 946, 1026, 1101, 1248, 1281
DpnI GATC 2 cut(s) 207, 396
DpnII GATC 2 cut(s) 205, 394
EaeI YGGCCR 3 cut(s) 306, 408, 966
Eam1104I CTCTTC 3 cut(s) 113, 264, 1249
EarI CTCTTC 3 cut(s) 113, 264, 1249
EciI GGCGGA 1 cut(s) 406
Eco130I CCWWGG 3 cut(s) 309, 372, 420
Eco24I GRGCYC 1 cut(s) 1088
Eco31I GGTCTC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 850
Eco47III AGCGCT 1 cut(s) 1038
Eco88I CYCGRG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 1085
EcoRII CCWGG 1 cut(s) 900
EcoT14I CCWWGG 3 cut(s) 309, 372, 420
EcoT38I GRGCYC 1 cut(s) 1088
ErhI CCWWGG 3 cut(s) 309, 372, 420
FaeI CATG 8 cut(s) 212, 313, 376, 466, 553, 666, 697, 882
FalI AAGNNNNNCTT 4 cut(s) 53, 85, 239, 271
FaqI GGGAC 3 cut(s) 313, 590, 836
FatI CATG 8 cut(s) 208, 309, 372, 462, 549, 662, 693, 878
FauI CCCGC 1 cut(s) 1215
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 4 cut(s) 262, 285, 378, 1220
FokI GGATG 4 cut(s) 68, 227, 326, 896
FriOI GRGCYC 1 cut(s) 1088
Fsp4HI GCNGC 4 cut(s) 262, 285, 378, 1220
FspBI CTAG 3 cut(s) 614, 626, 1022
GlaI GCGC 2 cut(s) 98, 1038
GluI GCNGC 4 cut(s) 262, 285, 378, 1220
GsaI CCCAGC 1 cut(s) 268
GsuI CTGGAG 2 cut(s) 1163, 1257
HaeII RGCGCY 1 cut(s) 1040
HaeIII GGCC 5 cut(s) 308, 410, 968, 1086, 1099
HapII CCGG 5 cut(s) 85, 115, 173, 400, 1095
HgaI GACGC 1 cut(s) 369
HhaI GCGC 2 cut(s) 99, 1039
Hin1I GRCGYC 3 cut(s) 131, 318, 380
Hin1II CATG 8 cut(s) 212, 313, 376, 466, 553, 666, 697, 882
Hin6I GCGC 2 cut(s) 97, 1037
HinP1I GCGC 2 cut(s) 97, 1037
HindIII AAGCTT 2 cut(s) 62, 248
HinfI GANTC 8 cut(s) 8, 140, 345, 477, 629, 635, 1135, 1241
HpaII CCGG 5 cut(s) 85, 115, 173, 400, 1095
HphI GGTGA 6 cut(s) 137, 199, 253, 337, 1119, 1192
Hpy166II GTNNAC 5 cut(s) 344, 674, 736, 1127, 1193
Hpy188III TCNNGA 9 cut(s) 85, 209, 349, 512, 626, 745, 975, 995, 1236
Hpy8I GTNNAC 5 cut(s) 344, 674, 736, 1127, 1193
Hpy99I CGWCG 4 cut(s) 133, 136, 163, 385
HpyAV CCTTC 3 cut(s) 184, 268, 820
HpyCH4III ACNGT 2 cut(s) 660, 1047
HpyCH4IV ACGT 4 cut(s) 131, 158, 302, 318
HpyCH4V TGCA 8 cut(s) 17, 232, 539, 569, 707, 788, 1051, 1109
HpyF10VI GCNNNNNNNGC 4 cut(s) 416, 526, 965, 1115
HpyF3I CTNAG 6 cut(s) 288, 946, 1026, 1101, 1248, 1281
HpySE526I ACGT 4 cut(s) 131, 158, 302, 318
Hsp92I GRCGYC 3 cut(s) 131, 318, 380
Hsp92II CATG 8 cut(s) 212, 313, 376, 466, 553, 666, 697, 882
HspAI GCGC 2 cut(s) 97, 1037
Kpn2I TCCGGA 1 cut(s) 84
KroI GCCGGC 1 cut(s) 399
KroNI GCCGGC 1 cut(s) 401
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 205, 394
LmnI GCTCC 1 cut(s) 104
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 3 cut(s) 26, 90, 538
MaeI CTAG 3 cut(s) 614, 626, 1022
MaeII ACGT 4 cut(s) 131, 158, 302, 318
MaeIII GTNAC 2 cut(s) 110, 808
MalI GATC 2 cut(s) 207, 396
MboI GATC 2 cut(s) 205, 394
MhlI GDGCHC 1 cut(s) 1088
MlsI TGGCCA 2 cut(s) 308, 968
MluCI AATT 7 cut(s) 332, 533, 600, 749, 870, 978, 1174
MluNI TGGCCA 2 cut(s) 308, 968
MlyI GAGTC 4 cut(s) 2, 339, 638, 1235
MmeI TCCRAC 2 cut(s) 363, 678
Mox20I TGGCCA 2 cut(s) 308, 968
MreI CGCCGGCG 1 cut(s) 399
MroI TCCGGA 1 cut(s) 84
MroNI GCCGGC 1 cut(s) 399
MscI TGGCCA 2 cut(s) 308, 968
MseI TTAA 2 cut(s) 815, 1254
MslI CAYNNNNRTG 2 cut(s) 213, 923
Msp20I TGGCCA 2 cut(s) 308, 968
MspA1I CMGCKG 1 cut(s) 264
MspI CCGG 5 cut(s) 85, 115, 173, 400, 1095
MspR9I CCNGG 2 cut(s) 902, 1096
Mva1269I GAATGC 2 cut(s) 621, 1118
MvaI CCWGG 1 cut(s) 902
MvnI CGCG 1 cut(s) 1219
MwoI GCNNNNNNNGC 4 cut(s) 416, 526, 965, 1115
NaeI GCCGGC 1 cut(s) 401
NciI CCSGG 1 cut(s) 1096
NcoI CCATGG 2 cut(s) 309, 372
NdeII GATC 2 cut(s) 205, 394
NgoMIV GCCGGC 1 cut(s) 399
NlaIII CATG 8 cut(s) 212, 313, 376, 466, 553, 666, 697, 882
NlaIV GGNNCC 4 cut(s) 92, 852, 1086, 1087
NmuCI GTSAC 1 cut(s) 808
PagI TCATGA 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 1223
PctI GAATGC 2 cut(s) 621, 1118
PdiI GCCGGC 1 cut(s) 401
PfeI GAWTC 4 cut(s) 140, 477, 635, 1135
PflFI GACNNNGTC 1 cut(s) 133
PinAI ACCGGT 1 cut(s) 172
PkrI GCNGC 4 cut(s) 263, 286, 379, 1221
PleI GAGTC 4 cut(s) 2, 339, 637, 1235
PpsI GAGTC 4 cut(s) 2, 339, 637, 1235
PshAI GACNNNNGTC 1 cut(s) 644
Psp6I CCWGG 1 cut(s) 900
PspFI CCCAGC 1 cut(s) 264
PspGI CCWGG 1 cut(s) 900
PspN4I GGNNCC 4 cut(s) 92, 852, 1086, 1087
PspOMI GGGCCC 1 cut(s) 1084
PspPI GGNCC 4 cut(s) 850, 1084, 1085, 1097
PsyI GACNNNGTC 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 264
RsaI GTAC 2 cut(s) 673, 990
RsaNI GTAC 2 cut(s) 672, 989
RseI CAYNNNNRTG 2 cut(s) 213, 923
SaqAI TTAA 2 cut(s) 815, 1254
SatI GCNGC 4 cut(s) 262, 285, 378, 1220
Sau3AI GATC 2 cut(s) 205, 394
Sau96I GGNCC 4 cut(s) 850, 1084, 1085, 1097
SchI GAGTC 4 cut(s) 2, 339, 638, 1235
ScrFI CCNGG 2 cut(s) 902, 1096
SduI GDGCHC 1 cut(s) 1088
SfaNI GCATC 3 cut(s) 26, 90, 538
SgrAI CRCCGGYG 1 cut(s) 399
SinI GGWCC 1 cut(s) 850
SmiMI CAYNNNNRTG 2 cut(s) 213, 923
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 7 cut(s) 332, 533, 600, 749, 870, 978, 1174
SsiI CCGC 6 cut(s) 239, 284, 377, 417, 1219, 1222
SspMI CTAG 3 cut(s) 614, 626, 1022
StyD4I CCNGG 2 cut(s) 900, 1094
StyI CCWWGG 3 cut(s) 309, 372, 420
TaaI ACNGT 2 cut(s) 660, 1047
TaiI ACGT 4 cut(s) 134, 161, 305, 321
TaqI TCGA 4 cut(s) 161, 513, 638, 648
TasI AATT 7 cut(s) 332, 533, 600, 749, 870, 978, 1174
TatI WGTACW 1 cut(s) 988
TauI GCSGC 3 cut(s) 287, 380, 1222
TfiI GAWTC 4 cut(s) 140, 477, 635, 1135
Tru1I TTAA 2 cut(s) 815, 1254
Tru9I TTAA 2 cut(s) 815, 1254
TscAI CASTG 3 cut(s) 366, 1058, 1146
TseFI GTSAC 1 cut(s) 808
TseI GCWGC 1 cut(s) 261
Tsp45I GTSAC 1 cut(s) 808
TspDTI ATGAA 3 cut(s) 42, 900, 1184
TspRI CASTG 3 cut(s) 366, 1058, 1146
Tth111I GACNNNGTC 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 850
XapI RAATTY 2 cut(s) 870, 1174
XbaI TCTAGA 1 cut(s) 625
XcmI CCANNNNNNNNNTGG 1 cut(s) 730
XspI CTAG 3 cut(s) 614, 626, 1022
ZraI GACGTC 2 cut(s) 132, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.