Rroxscaffold_1G00065720

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013290
Physical Location & Seq
Reverse (-)
87312365 .. 87315663
3299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00065720.1

Sequence Viewer

Length: 1335 bp
ATGTCTGACTCTACTGCATCGTCTTCTTCTTCTCCTATATGGCTATATTCATATATAAAGCTTCGCTTTTTCAATCGCATCCGGAGGTTCCTGCGCTCCAAGAATAGTAACCGGAAGAGGAACACGACGTCGTCTGATCCTCACCTCTTAGATACGTCGAGCTTGAGACCGGTCAAGGTTATGGTGAAGGAGAGCAGTAGTGATCATGAGGATGATGGTTTGGGGTTGCAGAGGGCGGTGAAGAAGCTTCACTTTGGGAGCTGGGAAGAGAAGGAGCTGGCGGCTGAGGAGATTGGGACATTGGCTATAGATGACGTCAAGGTGAGGAAATTGGTAGGTGGACTCGGGATTATACCAGTGTTGGTGTCCATGGCGGCGTCGGAGGTGGTTGATCGCCGGCGAGTGGCCGTTTTCGCCTTGGTTCAGCTTGCCAATGGAACTTACACCCTACCATGGAATCAACTGCCCAACTTGAGATATCATCGGAACAAGGCTCTCATGGTTGAGGCAGGAATCTTCTCCAAACTACAAAAAGACATCAACATTCTCGATGAGCCAACAAGGCATCAATTTGCAGAACTGCTCATGCTGTTATCTTCACTTGCAAATACCCCATTTCCTCTGCCCTCGTCGGAAATTGTCCCATTTCTAGTTGGCATTCTGGAGTCCGATTCGAGCAATGTCGAAACCAAACAGTCTTGTTTGGGTGCACTTCACAACCTATCCACTATGTTGGACAATGCAGGAGATTTGGTCTCCAATGGGGTAGTGGACACACTCTTGAAATTGTCCTCCGATAAAGAACTCTCCGAGAAAGCTCTTGCTACATTGGGGAACTTGGTTGTGACCTTAATGGGGAAGAAGGCTATGGAAAATAGTCCTCTGGTCCCAGAGAGTTTGATAGAAATTTTGACATGGGATGAAAAATCCAAATGCCAGGAACTTTCAAGCTACATTCTAATGATTTTAGCTCATCAAAGCTCAGACCAAAGAGCGAAAATGGCCAAGTCTGGAATTGTGCCTGTACTTCTTGAAGTGGCATTATTGGGTAGCTCTCTAGCTCAGAAAAGAGCTCTAAAGCTGTTGCAGTGGTTCAAGGACGAAAGGCAAGTGAAAATCGGCCCCCATTCCGGGCCTCAGACTACAAGGTTCGCATTCGGTTCACCTGTGAATCCACTGGAGGCTCAACAAGGGAAGAAGATGATGAAGAATTTGGTGAAACAGAGTTTACACAAGAATATGGAGATGATAACGCGGCGGGCGAGTGCTTCTGGAGACTCTTCTAAGATTAAGGCTTTGATTATTAGCACGAGCTCTAAGAGTTTGCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

444

Amino Acids

49.06

Weight (kDa)

9.48

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 210 - 351 1.5e-08 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013290)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27430
fragaria_vesca FvH4_3g07900
malus_domestica MD05G1302200.v1.1 MD10G1280900.v1.1
prunus_persica Prupe.4G060200_v2.0.a1
pyrus_communis pycom05g27980
rosa_chinensis RchiOBHm_Chr5g0010651
rosa_laevigata RLG00000031769
rosa_multiflora Rmu_co8124782.1_g000001 Rmu_sc0006103.1_g000004 Rmu_sc0014635.1_g000002
rosa_roxburghii Rroxscaffold_1G00065720
rosa_rugosa Rorug04G0451500
rosa_samantha Rh5AG083100 Rh5BG078400 Rh5CG091100 Rh5DG078500
rosa_wichuraiana Rw0G000670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 131, 318
AccII CGCG 1 cut(s) 1255
AccIII TCCGGA 1 cut(s) 81
AciI CCGC 5 cut(s) 236, 281, 374, 1255, 1258
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 2 cut(s) 405, 1002
AcsI RAATTY 2 cut(s) 906, 1210
AcyI GRCGYC 3 cut(s) 128, 315, 377
AfaI GTAC 1 cut(s) 1026
AfiI CCNNNNNNNGG 5 cut(s) 403, 453, 855, 1130, 1131
AgeI ACCGGT 1 cut(s) 169
AgsI TTSAA 5 cut(s) 73, 784, 948, 1034, 1096
AjnI CCWGG 1 cut(s) 936
Alw21I GWGCWC 3 cut(s) 712, 1075, 1316
Alw26I GTCTC 3 cut(s) 160, 760, 1269
Alw44I GTGCAC 1 cut(s) 708
AlwI GGATC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 344
Aor13HI TCCGGA 1 cut(s) 81
AoxI GGCC 4 cut(s) 405, 1002, 1120, 1133
ApaLI GTGCAC 1 cut(s) 708
ApoI RAATTY 2 cut(s) 906, 1210
AsiGI ACCGGT 1 cut(s) 169
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 3 cut(s) 886, 1121, 1133
AsuC2I CCSGG 1 cut(s) 1132
AsuHPI GGTGA 6 cut(s) 134, 196, 250, 334, 1155, 1228
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 1 cut(s) 886
BaeGI GKGCMC 1 cut(s) 712
BalI TGGCCA 1 cut(s) 1004
BanII GRGCYC 2 cut(s) 1075, 1316
BauI CACGAG 1 cut(s) 1309
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 3 cut(s) 712, 1075, 1316
BbvCI CCTCAGC 1 cut(s) 285
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 392
BciT130I CCWGG 1 cut(s) 938
BclI TGATCA 1 cut(s) 202
BcnI CCSGG 1 cut(s) 1132
BcoDI GTCTC 3 cut(s) 160, 760, 1269
BfaI CTAG 2 cut(s) 650, 1058
BfmI CTRYAG 1 cut(s) 306
BglI GCCNNNNNGGC 1 cut(s) 562
BisI GCNGC 3 cut(s) 282, 375, 1256
BlsI GCNGC 3 cut(s) 283, 376, 1257
Bme1390I CCNGG 2 cut(s) 938, 1132
Bme18I GGWCC 1 cut(s) 886
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 3 cut(s) 886, 1121, 1133
BmiI GGNNCC 3 cut(s) 89, 888, 1123
BmrFI CCNGG 2 cut(s) 938, 1132
BmsI GCATC 3 cut(s) 26, 87, 574
BpiI GAAGAC 1 cut(s) 15
BpmI CTGGAG 3 cut(s) 683, 1199, 1293
Bpu10I CCTNAGC 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 184, 493
BpuMI CCSGG 1 cut(s) 1132
BsaHI GRCGYC 3 cut(s) 128, 315, 377
BsaI GGTCTC 2 cut(s) 160, 760
BsaJI CCNNGG 3 cut(s) 369, 417, 452
BsaWI WCCGGW 3 cut(s) 81, 111, 169
BsaXI ACNNNNNCTCC 2 cut(s) 738, 768
Bsc4I CCNNNNNNNGG 5 cut(s) 403, 453, 855, 1130, 1131
Bse118I RCCGGY 2 cut(s) 169, 396
Bse1I ACTGG 2 cut(s) 356, 1182
Bse3DI GCAATG 1 cut(s) 685
BseAI TCCGGA 1 cut(s) 81
BseBI CCWGG 1 cut(s) 938
BseDI CCNNGG 3 cut(s) 369, 417, 452
BseGI GGATG 3 cut(s) 78, 217, 925
BseLI CCNNNNNNNGG 5 cut(s) 403, 453, 855, 1130, 1131
BseMI GCAATG 1 cut(s) 685
BseMII CTCAG 4 cut(s) 276, 996, 1076, 1151
BseNI ACTGG 2 cut(s) 356, 1182
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 712
BseYI CCCAGC 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 1255
BshFI GGCC 4 cut(s) 407, 1004, 1122, 1135
BshTI ACCGGT 1 cut(s) 169
BsiHKAI GWGCWC 3 cut(s) 712, 1075, 1316
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 5 cut(s) 82, 112, 170, 397, 1131
BslFI GGGAC 3 cut(s) 310, 626, 872
BslI CCNNNNNNNGG 5 cut(s) 403, 453, 855, 1130, 1131
BsmAI GTCTC 3 cut(s) 160, 760, 1269
BsmFI GGGAC 3 cut(s) 310, 626, 872
BsmI GAATGC 2 cut(s) 657, 1154
BsnI GGCC 4 cut(s) 407, 1004, 1122, 1135
Bso31I GGTCTC 2 cut(s) 160, 760
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 3 cut(s) 712, 1075, 1316
Bsp13I TCCGGA 1 cut(s) 81
Bsp143I GATC 3 cut(s) 136, 202, 391
Bsp19I CCATGG 2 cut(s) 369, 452
BspACI CCGC 5 cut(s) 236, 281, 374, 1255, 1258
BspANI GGCC 4 cut(s) 407, 1004, 1122, 1135
BspCNI CTCAG 4 cut(s) 277, 995, 1075, 1150
BspEI TCCGGA 1 cut(s) 81
BspFNI CGCG 1 cut(s) 1255
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 3 cut(s) 89, 888, 1123
BspPI GGATC 1 cut(s) 131
BspTNI GGTCTC 2 cut(s) 160, 760
BsrDI GCAATG 1 cut(s) 685
BsrFI RCCGGY 2 cut(s) 169, 396
BsrI ACTGG 2 cut(s) 356, 1182
BssAI RCCGGY 2 cut(s) 169, 396
BssECI CCNNGG 3 cut(s) 369, 417, 452
BssMI GATC 3 cut(s) 136, 202, 391
BssNI GRCGYC 3 cut(s) 128, 315, 377
BssSI CACGAG 1 cut(s) 1309
BssT1I CCWWGG 3 cut(s) 369, 417, 452
Bst2BI CACGAG 1 cut(s) 1309
Bst2UI CCWGG 1 cut(s) 938
Bst4CI ACNGT 1 cut(s) 696
Bst6I CTCTTC 3 cut(s) 110, 261, 1285
BstACI GRCGYC 3 cut(s) 128, 315, 377
BstC8I GCNNGC 4 cut(s) 279, 398, 429, 1260
BstDEI CTNAG 7 cut(s) 148, 285, 982, 1062, 1137, 1284, 1317
BstDSI CCRYGG 2 cut(s) 369, 452
BstF5I GGATG 3 cut(s) 78, 217, 925
BstFNI CGCG 1 cut(s) 1255
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 3 cut(s) 139, 205, 394
BstMAI GTCTC 3 cut(s) 160, 760, 1269
BstMBI GATC 3 cut(s) 136, 202, 391
BstMWI GCNNNNNNNGC 3 cut(s) 413, 562, 1001
BstNI CCWGG 1 cut(s) 938
BstSCI CCNGG 2 cut(s) 936, 1130
BstSFI CTRYAG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 712
BstUI CGCG 1 cut(s) 1255
BstV2I GAAGAC 1 cut(s) 15
BstXI CCANNNNNNTGG 1 cut(s) 733
BsuRI GGCC 4 cut(s) 407, 1004, 1122, 1135
BtgI CCRYGG 2 cut(s) 369, 452
BtsCI GGATG 3 cut(s) 78, 217, 925
BtsI GCAGTG 1 cut(s) 1094
BtsIMutI CAGTG 3 cut(s) 363, 1094, 1175
Cac8I GCNNGC 4 cut(s) 279, 398, 429, 1260
CciI TCATGA 1 cut(s) 205
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 2 cut(s) 169, 396
Cfr13I GGNCC 3 cut(s) 886, 1121, 1133
CseI GACGC 1 cut(s) 366
Csp6I GTAC 1 cut(s) 1025
CspAI ACCGGT 1 cut(s) 169
CviAII CATG 6 cut(s) 206, 370, 453, 499, 586, 915
CviQI GTAC 1 cut(s) 1025
DdeI CTNAG 7 cut(s) 148, 285, 982, 1062, 1137, 1284, 1317
DpnI GATC 3 cut(s) 138, 204, 393
DpnII GATC 3 cut(s) 136, 202, 391
EaeI YGGCCR 2 cut(s) 405, 1002
Eam1104I CTCTTC 3 cut(s) 110, 261, 1285
EarI CTCTTC 3 cut(s) 110, 261, 1285
Ecl136II GAGCTC 2 cut(s) 1073, 1314
Eco130I CCWWGG 3 cut(s) 369, 417, 452
Eco24I GRGCYC 2 cut(s) 1075, 1316
Eco31I GGTCTC 2 cut(s) 160, 760
Eco32I GATATC 1 cut(s) 479
Eco47I GGWCC 1 cut(s) 886
Eco53kI GAGCTC 2 cut(s) 1073, 1314
Eco88I CYCGRG 1 cut(s) 344
EcoICRI GAGCTC 2 cut(s) 1073, 1314
EcoRII CCWGG 1 cut(s) 936
EcoRV GATATC 1 cut(s) 479
EcoT14I CCWWGG 3 cut(s) 369, 417, 452
EcoT38I GRGCYC 2 cut(s) 1075, 1316
ErhI CCWWGG 3 cut(s) 369, 417, 452
FaeI CATG 6 cut(s) 209, 373, 456, 502, 589, 918
FalI AAGNNNNNCTT 4 cut(s) 50, 82, 236, 268
FaqI GGGAC 3 cut(s) 310, 626, 872
FatI CATG 6 cut(s) 205, 369, 452, 498, 585, 914
FauI CCCGC 1 cut(s) 1251
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 3 cut(s) 282, 375, 1256
FokI GGATG 3 cut(s) 65, 224, 932
FriOI GRGCYC 2 cut(s) 1075, 1316
Fsp4HI GCNGC 3 cut(s) 282, 375, 1256
FspBI CTAG 2 cut(s) 650, 1058
GlaI GCGC 1 cut(s) 95
GluI GCNGC 3 cut(s) 282, 375, 1256
GsaI CCCAGC 1 cut(s) 265
GsuI CTGGAG 3 cut(s) 683, 1199, 1293
HaeIII GGCC 4 cut(s) 407, 1004, 1122, 1135
HapII CCGG 5 cut(s) 82, 112, 170, 397, 1131
HgaI GACGC 1 cut(s) 366
HhaI GCGC 1 cut(s) 96
Hin1I GRCGYC 3 cut(s) 128, 315, 377
Hin1II CATG 6 cut(s) 209, 373, 456, 502, 589, 918
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HindIII AAGCTT 2 cut(s) 59, 245
HinfI GANTC 8 cut(s) 8, 342, 457, 513, 665, 671, 1171, 1277
HpaII CCGG 5 cut(s) 82, 112, 170, 397, 1131
HphI GGTGA 6 cut(s) 134, 196, 250, 334, 1155, 1228
Hpy166II GTNNAC 5 cut(s) 341, 710, 772, 1163, 1229
Hpy188III TCNNGA 9 cut(s) 82, 206, 346, 548, 662, 781, 1011, 1031, 1272
Hpy8I GTNNAC 5 cut(s) 341, 710, 772, 1163, 1229
Hpy99I CGWCG 5 cut(s) 130, 133, 160, 382, 634
HpyAV CCTTC 3 cut(s) 181, 265, 856
HpyCH4III ACNGT 1 cut(s) 696
HpyCH4IV ACGT 3 cut(s) 128, 155, 315
HpyCH4V TGCA 7 cut(s) 17, 229, 575, 605, 710, 743, 1087
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 562, 1001
HpyF3I CTNAG 7 cut(s) 148, 285, 982, 1062, 1137, 1284, 1317
HpySE526I ACGT 3 cut(s) 128, 155, 315
Hsp92I GRCGYC 3 cut(s) 128, 315, 377
Hsp92II CATG 6 cut(s) 209, 373, 456, 502, 589, 918
HspAI GCGC 1 cut(s) 94
Kpn2I TCCGGA 1 cut(s) 81
KroI GCCGGC 1 cut(s) 396
KroNI GCCGGC 1 cut(s) 398
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 3 cut(s) 136, 202, 391
LmnI GCTCC 3 cut(s) 101, 258, 274
LweI GCATC 3 cut(s) 26, 87, 574
MaeI CTAG 2 cut(s) 650, 1058
MaeII ACGT 3 cut(s) 128, 155, 315
MaeIII GTNAC 2 cut(s) 107, 844
MalI GATC 3 cut(s) 138, 204, 393
MboI GATC 3 cut(s) 136, 202, 391
MhlI GDGCHC 3 cut(s) 712, 1075, 1316
MlsI TGGCCA 1 cut(s) 1004
MluCI AATT 7 cut(s) 329, 569, 636, 785, 906, 1014, 1210
MluNI TGGCCA 1 cut(s) 1004
MlyI GAGTC 4 cut(s) 2, 336, 674, 1271
MmeI TCCRAC 3 cut(s) 360, 612, 714
Mox20I TGGCCA 1 cut(s) 1004
MreI CGCCGGCG 1 cut(s) 396
MroI TCCGGA 1 cut(s) 81
MroNI GCCGGC 1 cut(s) 396
MscI TGGCCA 1 cut(s) 1004
MseI TTAA 2 cut(s) 851, 1290
MslI CAYNNNNRTG 2 cut(s) 210, 959
Msp20I TGGCCA 1 cut(s) 1004
MspI CCGG 5 cut(s) 82, 112, 170, 397, 1131
MspR9I CCNGG 2 cut(s) 938, 1132
Mva1269I GAATGC 2 cut(s) 657, 1154
MvaI CCWGG 1 cut(s) 938
MvnI CGCG 1 cut(s) 1255
MwoI GCNNNNNNNGC 3 cut(s) 413, 562, 1001
NaeI GCCGGC 1 cut(s) 398
NciI CCSGG 1 cut(s) 1132
NcoI CCATGG 2 cut(s) 369, 452
NdeII GATC 3 cut(s) 136, 202, 391
NgoMIV GCCGGC 1 cut(s) 396
NlaIII CATG 6 cut(s) 209, 373, 456, 502, 589, 918
NlaIV GGNNCC 3 cut(s) 89, 888, 1123
NmuCI GTSAC 1 cut(s) 844
PagI TCATGA 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 1259
PctI GAATGC 2 cut(s) 657, 1154
PdiI GCCGGC 1 cut(s) 398
PfeI GAWTC 4 cut(s) 457, 513, 671, 1171
PflFI GACNNNGTC 1 cut(s) 130
PinAI ACCGGT 1 cut(s) 169
PkrI GCNGC 3 cut(s) 283, 376, 1257
PleI GAGTC 4 cut(s) 2, 336, 673, 1271
PpsI GAGTC 4 cut(s) 2, 336, 673, 1271
Psp124BI GAGCTC 2 cut(s) 1075, 1316
Psp6I CCWGG 1 cut(s) 936
PspFI CCCAGC 1 cut(s) 261
PspGI CCWGG 1 cut(s) 936
PspN4I GGNNCC 3 cut(s) 89, 888, 1123
PspPI GGNCC 3 cut(s) 886, 1121, 1133
PsyI GACNNNGTC 1 cut(s) 130
RsaI GTAC 1 cut(s) 1026
RsaNI GTAC 1 cut(s) 1025
RseI CAYNNNNRTG 2 cut(s) 210, 959
SacI GAGCTC 2 cut(s) 1075, 1316
SaqAI TTAA 2 cut(s) 851, 1290
SatI GCNGC 3 cut(s) 282, 375, 1256
Sau3AI GATC 3 cut(s) 136, 202, 391
Sau96I GGNCC 3 cut(s) 886, 1121, 1133
SchI GAGTC 4 cut(s) 2, 336, 674, 1271
ScrFI CCNGG 2 cut(s) 938, 1132
SduI GDGCHC 3 cut(s) 712, 1075, 1316
SfaNI GCATC 3 cut(s) 26, 87, 574
SfcI CTRYAG 1 cut(s) 306
SgrAI CRCCGGYG 1 cut(s) 396
SinI GGWCC 1 cut(s) 886
SmiMI CAYNNNNRTG 2 cut(s) 210, 959
SmlI CTYRAG 2 cut(s) 163, 472
SmoI CTYRAG 2 cut(s) 163, 472
Sse9I AATT 7 cut(s) 329, 569, 636, 785, 906, 1014, 1210
SsiI CCGC 5 cut(s) 236, 281, 374, 1255, 1258
SspMI CTAG 2 cut(s) 650, 1058
SstI GAGCTC 2 cut(s) 1075, 1316
StyD4I CCNGG 2 cut(s) 936, 1130
StyI CCWWGG 3 cut(s) 369, 417, 452
TaaI ACNGT 1 cut(s) 696
TaiI ACGT 3 cut(s) 131, 158, 318
TaqI TCGA 4 cut(s) 158, 549, 674, 684
TasI AATT 7 cut(s) 329, 569, 636, 785, 906, 1014, 1210
TatI WGTACW 1 cut(s) 1024
TauI GCSGC 3 cut(s) 284, 377, 1258
TfiI GAWTC 4 cut(s) 457, 513, 671, 1171
Tru1I TTAA 2 cut(s) 851, 1290
Tru9I TTAA 2 cut(s) 851, 1290
TscAI CASTG 3 cut(s) 363, 1094, 1182
TseFI GTSAC 1 cut(s) 844
Tsp45I GTSAC 1 cut(s) 844
TspDTI ATGAA 3 cut(s) 39, 936, 1220
TspRI CASTG 3 cut(s) 363, 1094, 1182
Tth111I GACNNNGTC 1 cut(s) 130
VneI GTGCAC 1 cut(s) 708
VpaK11BI GGWCC 1 cut(s) 886
XapI RAATTY 2 cut(s) 906, 1210
XcmI CCANNNNNNNNNTGG 1 cut(s) 766
XspI CTAG 2 cut(s) 650, 1058
ZraI GACGTC 2 cut(s) 129, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.