Rmu_sc0014635.1_g000002

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014635.1
OG0013290
Physical Location & Seq
Reverse (-)
6474 .. 9186
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014635.1_g000002.1.cds

Sequence Viewer

Length: 1293 bp
atgtctgactctactgcatcgtcttcttcttcttctcctaaatggctatattcatatataaagcttcgctttttcaatcgcatccggaggttcctgcgctccaagaaaagtaaccggaagaggaacacgacgtcgtctgatctcttagatacgtcgagcttgagaccggtcaaggttatggtgaaggagagcagtagtgatcatgaggatgatggtttggggttgcagagggcggtgaagaagcttcactttggcagctgggaagagaaggagttggcggctgaggagattgggacgttggccatggatgacgtcaaggtgaggaaattggtaggtggactcgggattataccagtgttggtgtccatggcggcgtcggaggtggttgatcgccggcgagtggccgtttccgccttggttcagcttgccaatggaacttacacgaacaaggctctcatggttgaggcaggaatcttctccaaactaccaaaagacatcaacattctcgatgagccaacaaggcatcaatttgcagaactgctcatgttgttatcttcacttgcaaataccccatttcctctgccctcatcggaaattgtcccgtttctagttggcattctagagtcagattcgaccaatgtcgaaaccaaacagtcatgtttgggtacacttcacaacctatccaccatgttggacaatgcaggagatttagtctccaatggggtggtggacacactcttgaaattgtcttccgataaagaaatctccgagaaagctcttgcaacattggggaacttggttgtgaccttaatggggaagaaggctatggaaaatagtcctctggtcccagagagtttgatagaaattttgacatgggatgaaaaatccaaatgccaggaactttcaagctacattctaatgattttagctcatcaaagctcagaccaaagagcgaaaatggccaagtctggaattgtgcctgtacttcttgaagtggcattattgggtagctctctagctcagaaaagagcgctaaaactgttgcagtggttcaaggacgaaaggcaagcgaaaatgggcccccattccgggcctcagactgcaaggttcgcattcggttcacctgtgaatccgctggaggctcaacaagggaagaagatgatgaagaatttggtgaaacagagtttacataagaatatggagatgataacgcggcgggcgagtgcttctggagactcttctaagattaaggctttgattattagcacaagttctaagagtttgccttactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

430

Amino Acids

47.19

Weight (kDa)

9.46

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013290)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27430
fragaria_vesca FvH4_3g07900
malus_domestica MD05G1302200.v1.1 MD10G1280900.v1.1
prunus_persica Prupe.4G060200_v2.0.a1
pyrus_communis pycom05g27980
rosa_chinensis RchiOBHm_Chr5g0010651
rosa_laevigata RLG00000031769
rosa_multiflora Rmu_co8124782.1_g000001 Rmu_sc0006103.1_g000004 Rmu_sc0014635.1_g000002
rosa_roxburghii Rroxscaffold_1G00065720
rosa_rugosa Rorug04G0451500
rosa_samantha Rh5AG083100 Rh5BG078400 Rh5CG091100 Rh5DG078500
rosa_wichuraiana Rw0G000670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 134, 315
AccII CGCG 1 cut(s) 1213
AccIII TCCGGA 1 cut(s) 84
AciI CCGC 7 cut(s) 233, 278, 371, 411, 1133, 1213, 1216
AcoI YGGCCR 3 cut(s) 300, 402, 960
AcsI RAATTY 2 cut(s) 864, 1168
AcyI GRCGYC 3 cut(s) 131, 312, 374
AfaI GTAC 2 cut(s) 667, 984
AfeI AGCGCT 1 cut(s) 1032
AfiI CCNNNNNNNGG 4 cut(s) 400, 813, 1088, 1089
AgeI ACCGGT 1 cut(s) 166
AgsI TTSAA 5 cut(s) 76, 742, 906, 992, 1054
AjnI CCWGG 1 cut(s) 894
Alw26I GTCTC 3 cut(s) 157, 718, 1227
Ama87I CYCGRG 1 cut(s) 341
Aor13HI TCCGGA 1 cut(s) 84
Aor51HI AGCGCT 1 cut(s) 1032
AoxI GGCC 5 cut(s) 300, 402, 960, 1078, 1091
ApaI GGGCCC 1 cut(s) 1082
ApeKI GCWGC 1 cut(s) 255
ApoI RAATTY 2 cut(s) 864, 1168
AsiGI ACCGGT 1 cut(s) 166
AspLEI GCGC 2 cut(s) 99, 1033
AspS9I GGNCC 4 cut(s) 844, 1078, 1079, 1091
AsuC2I CCSGG 1 cut(s) 1090
AsuHPI GGTGA 5 cut(s) 193, 247, 331, 1113, 1186
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 844
BaeGI GKGCMC 1 cut(s) 1082
BalI TGGCCA 2 cut(s) 302, 962
BanII GRGCYC 1 cut(s) 1082
BbsI GAAGAC 2 cut(s) 15, 741
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 267
BccI CCATC 1 cut(s) 206
BceAI ACGGC 1 cut(s) 389
BciT130I CCWGG 1 cut(s) 896
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 1 cut(s) 1090
BcoDI GTCTC 3 cut(s) 157, 718, 1227
BfaI CTAG 3 cut(s) 608, 620, 1016
BfoI RGCGCY 1 cut(s) 1034
BglI GCCNNNNNGGC 1 cut(s) 520
BisI GCNGC 4 cut(s) 256, 279, 372, 1214
BlsI GCNGC 4 cut(s) 257, 280, 373, 1215
Bme1390I CCNGG 2 cut(s) 896, 1090
Bme18I GGWCC 1 cut(s) 844
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 4 cut(s) 844, 1078, 1079, 1091
BmiI GGNNCC 4 cut(s) 92, 846, 1080, 1081
BmrFI CCNGG 2 cut(s) 896, 1090
BmsI GCATC 3 cut(s) 26, 90, 532
BoxI GACNNNNGTC 1 cut(s) 638
BpiI GAAGAC 2 cut(s) 15, 741
BpmI CTGGAG 2 cut(s) 1157, 1251
Bpu10I CCTNAGC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 1090
BsaHI GRCGYC 3 cut(s) 131, 312, 374
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 3 cut(s) 303, 366, 414
BsaWI WCCGGW 3 cut(s) 84, 114, 166
BsaXI ACNNNNNCTCC 2 cut(s) 696, 726
Bsc4I CCNNNNNNNGG 4 cut(s) 400, 813, 1088, 1089
Bse118I RCCGGY 2 cut(s) 166, 393
Bse1I ACTGG 1 cut(s) 353
BseAI TCCGGA 1 cut(s) 84
BseBI CCWGG 1 cut(s) 896
BseDI CCNNGG 3 cut(s) 303, 366, 414
BseGI GGATG 4 cut(s) 81, 214, 313, 883
BseLI CCNNNNNNNGG 4 cut(s) 400, 813, 1088, 1089
BseMII CTCAG 4 cut(s) 273, 954, 1034, 1109
BseNI ACTGG 1 cut(s) 353
BseRI GAGGAG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 1082
BseXI GCAGC 1 cut(s) 267
BseYI CCCAGC 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 1213
BshFI GGCC 5 cut(s) 302, 404, 962, 1080, 1093
BshTI ACCGGT 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 5 cut(s) 85, 115, 167, 394, 1089
BslFI GGGAC 3 cut(s) 307, 584, 830
BslI CCNNNNNNNGG 4 cut(s) 400, 813, 1088, 1089
BsmAI GTCTC 3 cut(s) 157, 718, 1227
BsmFI GGGAC 3 cut(s) 307, 584, 830
BsmI GAATGC 2 cut(s) 615, 1112
BsnI GGCC 5 cut(s) 302, 404, 962, 1080, 1093
Bso31I GGTCTC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 341
Bsp120I GGGCCC 1 cut(s) 1078
Bsp1286I GDGCHC 1 cut(s) 1082
Bsp13I TCCGGA 1 cut(s) 84
Bsp143I GATC 3 cut(s) 139, 199, 388
Bsp19I CCATGG 2 cut(s) 303, 366
BspACI CCGC 7 cut(s) 233, 278, 371, 411, 1133, 1213, 1216
BspANI GGCC 5 cut(s) 302, 404, 962, 1080, 1093
BspCNI CTCAG 4 cut(s) 274, 953, 1033, 1108
BspEI TCCGGA 1 cut(s) 84
BspFNI CGCG 1 cut(s) 1213
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 4 cut(s) 92, 846, 1080, 1081
BspTNI GGTCTC 1 cut(s) 157
BsrFI RCCGGY 2 cut(s) 166, 393
BsrI ACTGG 1 cut(s) 353
BssAI RCCGGY 2 cut(s) 166, 393
BssECI CCNNGG 3 cut(s) 303, 366, 414
BssMI GATC 3 cut(s) 139, 199, 388
BssNI GRCGYC 3 cut(s) 131, 312, 374
BssT1I CCWWGG 3 cut(s) 303, 366, 414
Bst2UI CCWGG 1 cut(s) 896
Bst4CI ACNGT 2 cut(s) 654, 1041
Bst6I CTCTTC 3 cut(s) 113, 258, 1243
BstACI GRCGYC 3 cut(s) 131, 312, 374
BstC8I GCNNGC 4 cut(s) 395, 426, 1068, 1218
BstDEI CTNAG 7 cut(s) 145, 282, 940, 1020, 1095, 1242, 1275
BstDSI CCRYGG 2 cut(s) 303, 366
BstF5I GGATG 4 cut(s) 81, 214, 313, 883
BstFNI CGCG 1 cut(s) 1213
BstH2I RGCGCY 1 cut(s) 1034
BstHHI GCGC 2 cut(s) 99, 1033
BstKTI GATC 3 cut(s) 142, 202, 391
BstMAI GTCTC 3 cut(s) 157, 718, 1227
BstMBI GATC 3 cut(s) 139, 199, 388
BstMWI GCNNNNNNNGC 4 cut(s) 410, 520, 959, 1109
BstNI CCWGG 1 cut(s) 896
BstPAI GACNNNNGTC 1 cut(s) 638
BstSCI CCNGG 2 cut(s) 894, 1088
BstSLI GKGCMC 1 cut(s) 1082
BstUI CGCG 1 cut(s) 1213
BstV1I GCAGC 1 cut(s) 267
BstV2I GAAGAC 2 cut(s) 15, 741
BstXI CCANNNNNNTGG 2 cut(s) 691, 724
BsuRI GGCC 5 cut(s) 302, 404, 962, 1080, 1093
BtgI CCRYGG 2 cut(s) 303, 366
BtsCI GGATG 4 cut(s) 81, 214, 313, 883
BtsI GCAGTG 1 cut(s) 1052
BtsIMutI CAGTG 2 cut(s) 360, 1052
Cac8I GCNNGC 4 cut(s) 395, 426, 1068, 1218
CciI TCATGA 1 cut(s) 202
CfoI GCGC 2 cut(s) 99, 1033
Cfr10I RCCGGY 2 cut(s) 166, 393
Cfr13I GGNCC 4 cut(s) 844, 1078, 1079, 1091
CseI GACGC 1 cut(s) 363
Csp6I GTAC 2 cut(s) 666, 983
CspAI ACCGGT 1 cut(s) 166
CviAII CATG 8 cut(s) 203, 304, 367, 457, 544, 657, 688, 873
CviQI GTAC 2 cut(s) 666, 983
DdeI CTNAG 7 cut(s) 145, 282, 940, 1020, 1095, 1242, 1275
DpnI GATC 3 cut(s) 141, 201, 390
DpnII GATC 3 cut(s) 139, 199, 388
EaeI YGGCCR 3 cut(s) 300, 402, 960
Eam1104I CTCTTC 3 cut(s) 113, 258, 1243
EarI CTCTTC 3 cut(s) 113, 258, 1243
EciI GGCGGA 1 cut(s) 400
Eco130I CCWWGG 3 cut(s) 303, 366, 414
Eco24I GRGCYC 1 cut(s) 1082
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 844
Eco47III AGCGCT 1 cut(s) 1032
Eco88I CYCGRG 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 1079
EcoRII CCWGG 1 cut(s) 894
EcoT14I CCWWGG 3 cut(s) 303, 366, 414
EcoT38I GRGCYC 1 cut(s) 1082
ErhI CCWWGG 3 cut(s) 303, 366, 414
FaeI CATG 8 cut(s) 206, 307, 370, 460, 547, 660, 691, 876
FalI AAGNNNNNCTT 4 cut(s) 53, 85, 233, 265
FaqI GGGAC 3 cut(s) 307, 584, 830
FatI CATG 8 cut(s) 202, 303, 366, 456, 543, 656, 687, 872
FauI CCCGC 1 cut(s) 1209
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 4 cut(s) 256, 279, 372, 1214
FokI GGATG 4 cut(s) 68, 221, 320, 890
FriOI GRGCYC 1 cut(s) 1082
Fsp4HI GCNGC 4 cut(s) 256, 279, 372, 1214
FspBI CTAG 3 cut(s) 608, 620, 1016
GlaI GCGC 2 cut(s) 98, 1032
GluI GCNGC 4 cut(s) 256, 279, 372, 1214
GsaI CCCAGC 1 cut(s) 262
GsuI CTGGAG 2 cut(s) 1157, 1251
HaeII RGCGCY 1 cut(s) 1034
HaeIII GGCC 5 cut(s) 302, 404, 962, 1080, 1093
HapII CCGG 5 cut(s) 85, 115, 167, 394, 1089
HgaI GACGC 1 cut(s) 363
HhaI GCGC 2 cut(s) 99, 1033
Hin1I GRCGYC 3 cut(s) 131, 312, 374
Hin1II CATG 8 cut(s) 206, 307, 370, 460, 547, 660, 691, 876
Hin6I GCGC 2 cut(s) 97, 1031
HinP1I GCGC 2 cut(s) 97, 1031
HindIII AAGCTT 2 cut(s) 62, 242
HinfI GANTC 7 cut(s) 8, 339, 471, 623, 629, 1129, 1235
HpaII CCGG 5 cut(s) 85, 115, 167, 394, 1089
HphI GGTGA 5 cut(s) 193, 247, 331, 1113, 1186
Hpy166II GTNNAC 5 cut(s) 338, 668, 730, 1121, 1187
Hpy188III TCNNGA 9 cut(s) 85, 203, 343, 506, 620, 739, 969, 989, 1230
Hpy8I GTNNAC 5 cut(s) 338, 668, 730, 1121, 1187
Hpy99I CGWCG 4 cut(s) 133, 136, 157, 379
HpyAV CCTTC 3 cut(s) 178, 262, 814
HpyCH4III ACNGT 2 cut(s) 654, 1041
HpyCH4IV ACGT 4 cut(s) 131, 152, 296, 312
HpyCH4V TGCA 8 cut(s) 17, 226, 533, 563, 701, 782, 1045, 1103
HpyF10VI GCNNNNNNNGC 4 cut(s) 410, 520, 959, 1109
HpyF3I CTNAG 7 cut(s) 145, 282, 940, 1020, 1095, 1242, 1275
HpySE526I ACGT 4 cut(s) 131, 152, 296, 312
Hsp92I GRCGYC 3 cut(s) 131, 312, 374
Hsp92II CATG 8 cut(s) 206, 307, 370, 460, 547, 660, 691, 876
HspAI GCGC 2 cut(s) 97, 1031
Kpn2I TCCGGA 1 cut(s) 84
KroI GCCGGC 1 cut(s) 393
KroNI GCCGGC 1 cut(s) 395
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 139, 199, 388
LmnI GCTCC 1 cut(s) 104
Lsp1109I GCAGC 1 cut(s) 267
LweI GCATC 3 cut(s) 26, 90, 532
MaeI CTAG 3 cut(s) 608, 620, 1016
MaeII ACGT 4 cut(s) 131, 152, 296, 312
MaeIII GTNAC 2 cut(s) 110, 802
MalI GATC 3 cut(s) 141, 201, 390
MboI GATC 3 cut(s) 139, 199, 388
MhlI GDGCHC 1 cut(s) 1082
MlsI TGGCCA 2 cut(s) 302, 962
MluCI AATT 7 cut(s) 326, 527, 594, 743, 864, 972, 1168
MluNI TGGCCA 2 cut(s) 302, 962
MlyI GAGTC 4 cut(s) 2, 333, 632, 1229
MmeI TCCRAC 2 cut(s) 357, 672
Mox20I TGGCCA 2 cut(s) 302, 962
MreI CGCCGGCG 1 cut(s) 393
MroI TCCGGA 1 cut(s) 84
MroNI GCCGGC 1 cut(s) 393
MscI TGGCCA 2 cut(s) 302, 962
MseI TTAA 2 cut(s) 809, 1248
MslI CAYNNNNRTG 2 cut(s) 207, 917
Msp20I TGGCCA 2 cut(s) 302, 962
MspA1I CMGCKG 2 cut(s) 258, 1135
MspI CCGG 5 cut(s) 85, 115, 167, 394, 1089
MspR9I CCNGG 2 cut(s) 896, 1090
Mva1269I GAATGC 2 cut(s) 615, 1112
MvaI CCWGG 1 cut(s) 896
MvnI CGCG 1 cut(s) 1213
MwoI GCNNNNNNNGC 4 cut(s) 410, 520, 959, 1109
NaeI GCCGGC 1 cut(s) 395
NciI CCSGG 1 cut(s) 1090
NcoI CCATGG 2 cut(s) 303, 366
NdeII GATC 3 cut(s) 139, 199, 388
NgoMIV GCCGGC 1 cut(s) 393
NlaIII CATG 8 cut(s) 206, 307, 370, 460, 547, 660, 691, 876
NlaIV GGNNCC 4 cut(s) 92, 846, 1080, 1081
NmuCI GTSAC 1 cut(s) 802
PagI TCATGA 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 1217
PctI GAATGC 2 cut(s) 615, 1112
PdiI GCCGGC 1 cut(s) 395
PfeI GAWTC 3 cut(s) 471, 629, 1129
PflFI GACNNNGTC 1 cut(s) 133
PinAI ACCGGT 1 cut(s) 166
PkrI GCNGC 4 cut(s) 257, 280, 373, 1215
PleI GAGTC 4 cut(s) 2, 333, 631, 1229
PpsI GAGTC 4 cut(s) 2, 333, 631, 1229
PshAI GACNNNNGTC 1 cut(s) 638
Psp6I CCWGG 1 cut(s) 894
PspFI CCCAGC 1 cut(s) 258
PspGI CCWGG 1 cut(s) 894
PspN4I GGNNCC 4 cut(s) 92, 846, 1080, 1081
PspOMI GGGCCC 1 cut(s) 1078
PspPI GGNCC 4 cut(s) 844, 1078, 1079, 1091
PsyI GACNNNGTC 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 258
RsaI GTAC 2 cut(s) 667, 984
RsaNI GTAC 2 cut(s) 666, 983
RseI CAYNNNNRTG 2 cut(s) 207, 917
SaqAI TTAA 2 cut(s) 809, 1248
SatI GCNGC 4 cut(s) 256, 279, 372, 1214
Sau3AI GATC 3 cut(s) 139, 199, 388
Sau96I GGNCC 4 cut(s) 844, 1078, 1079, 1091
SchI GAGTC 4 cut(s) 2, 333, 632, 1229
ScrFI CCNGG 2 cut(s) 896, 1090
SduI GDGCHC 1 cut(s) 1082
SfaNI GCATC 3 cut(s) 26, 90, 532
SgrAI CRCCGGYG 1 cut(s) 393
SinI GGWCC 1 cut(s) 844
SmiMI CAYNNNNRTG 2 cut(s) 207, 917
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
Sse9I AATT 7 cut(s) 326, 527, 594, 743, 864, 972, 1168
SsiI CCGC 7 cut(s) 233, 278, 371, 411, 1133, 1213, 1216
SspMI CTAG 3 cut(s) 608, 620, 1016
StyD4I CCNGG 2 cut(s) 894, 1088
StyI CCWWGG 3 cut(s) 303, 366, 414
TaaI ACNGT 2 cut(s) 654, 1041
TaiI ACGT 4 cut(s) 134, 155, 299, 315
TaqI TCGA 4 cut(s) 155, 507, 632, 642
TasI AATT 7 cut(s) 326, 527, 594, 743, 864, 972, 1168
TatI WGTACW 1 cut(s) 982
TauI GCSGC 3 cut(s) 281, 374, 1216
TfiI GAWTC 3 cut(s) 471, 629, 1129
Tru1I TTAA 2 cut(s) 809, 1248
Tru9I TTAA 2 cut(s) 809, 1248
TscAI CASTG 2 cut(s) 360, 1052
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 1 cut(s) 255
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 3 cut(s) 42, 894, 1178
TspRI CASTG 2 cut(s) 360, 1052
Tth111I GACNNNGTC 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 844
XapI RAATTY 2 cut(s) 864, 1168
XbaI TCTAGA 1 cut(s) 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XspI CTAG 3 cut(s) 608, 620, 1016
ZraI GACGTC 2 cut(s) 132, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.