Rmu_co8124782.1_g000001

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8124782.1
OG0013290
Physical Location & Seq
Reverse (-)
2 .. 446
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8124782.1_g000001.1.cds

Sequence Viewer

Length: 445 bp
atgttggacaatgcaggagatttagtctccaatggggtggtggacacactcttgaaattgtctttcgataaagaaatctccgagaaagctcttgcaacattggggaacttggttgtgaccttaatggggaagaaggctatggaaaatagtcctctggtcccagagagtttgatagaaattttgacatgggatgaaaaatccaaatgccaggaactttcaagctacattctaatgattttagctcatcaaagctcagaccaaagagcgaaaatggccaagtctggaattgtgcctgtacttcttgaagtggcattattgggtagctctctagctcagaaaagagcgctaaaactgttgcagtggttcaaggacgaaaggcaagcgaaaatgggcccccattccgggcctcagactgcaaggttcgcattcggttcacctgtgaatc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.14

Weight (kDa)

7.84

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013290)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27430
fragaria_vesca FvH4_3g07900
malus_domestica MD05G1302200.v1.1 MD10G1280900.v1.1
prunus_persica Prupe.4G060200_v2.0.a1
pyrus_communis pycom05g27980
rosa_chinensis RchiOBHm_Chr5g0010651
rosa_laevigata RLG00000031769
rosa_multiflora Rmu_co8124782.1_g000001 Rmu_sc0006103.1_g000004 Rmu_sc0014635.1_g000002
rosa_roxburghii Rroxscaffold_1G00065720
rosa_rugosa Rorug04G0451500
rosa_samantha Rh5AG083100 Rh5BG078400 Rh5CG091100 Rh5DG078500
rosa_wichuraiana Rw0G000670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 1 cut(s) 177
AfaI GTAC 1 cut(s) 297
AfeI AGCGCT 1 cut(s) 345
AfiI CCNNNNNNNGG 3 cut(s) 126, 401, 402
AgsI TTSAA 4 cut(s) 55, 219, 305, 367
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 6 cut(s) 89, 222, 242, 252, 324, 332
AluI AGCT 6 cut(s) 89, 222, 242, 252, 324, 332
Alw26I GTCTC 1 cut(s) 31
Aor51HI AGCGCT 1 cut(s) 345
AoxI GGCC 3 cut(s) 273, 391, 404
ApaI GGGCCC 1 cut(s) 395
ApoI RAATTY 1 cut(s) 177
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 4 cut(s) 157, 391, 392, 404
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 1 cut(s) 426
AvaII GGWCC 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 395
BalI TGGCCA 1 cut(s) 275
BanII GRGCYC 1 cut(s) 395
BciT130I CCWGG 1 cut(s) 209
BcnI CCSGG 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 1 cut(s) 329
BfoI RGCGCY 1 cut(s) 347
Bme1390I CCNGG 2 cut(s) 209, 403
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 4 cut(s) 157, 391, 392, 404
BmiI GGNNCC 3 cut(s) 159, 393, 394
BmrFI CCNGG 2 cut(s) 209, 403
BpuMI CCSGG 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 401, 402
BseBI CCWGG 1 cut(s) 209
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 3 cut(s) 126, 401, 402
BseMII CTCAG 3 cut(s) 267, 347, 422
BseSI GKGCMC 1 cut(s) 395
BshFI GGCC 3 cut(s) 275, 393, 406
BsiSI CCGG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 3 cut(s) 126, 401, 402
BsmAI GTCTC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 143
BsmI GAATGC 1 cut(s) 425
BsnI GGCC 3 cut(s) 275, 393, 406
Bsp120I GGGCCC 1 cut(s) 391
Bsp1286I GDGCHC 1 cut(s) 395
BspANI GGCC 3 cut(s) 275, 393, 406
BspCNI CTCAG 3 cut(s) 266, 346, 421
BspLI GGNNCC 3 cut(s) 159, 393, 394
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 3 cut(s) 253, 333, 408
BstF5I GGATG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 1 cut(s) 346
BstMAI GTCTC 1 cut(s) 31
BstMWI GCNNNNNNNGC 2 cut(s) 272, 422
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 207, 401
BstSLI GKGCMC 1 cut(s) 395
BstXI CCANNNNNNTGG 1 cut(s) 37
BsuRI GGCC 3 cut(s) 275, 393, 406
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 365
BtsIMutI CAGTG 1 cut(s) 365
Cac8I GCNNGC 1 cut(s) 381
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 4 cut(s) 157, 391, 392, 404
Csp6I GTAC 1 cut(s) 296
CviAII CATG 1 cut(s) 186
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 3 cut(s) 253, 333, 408
EaeI YGGCCR 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 157
Eco47III AGCGCT 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 207
EcoT38I GRGCYC 1 cut(s) 395
FaeI CATG 1 cut(s) 189
FaiI YATR 2 cut(s) 140, 187
FaqI GGGAC 1 cut(s) 143
FatI CATG 1 cut(s) 185
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 395
FspBI CTAG 1 cut(s) 329
GlaI GCGC 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 347
HaeIII GGCC 3 cut(s) 275, 393, 406
HapII CCGG 1 cut(s) 402
HhaI GCGC 1 cut(s) 346
Hin1II CATG 1 cut(s) 189
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HinfI GANTC 1 cut(s) 442
HpaII CCGG 1 cut(s) 402
HphI GGTGA 1 cut(s) 426
Hpy166II GTNNAC 2 cut(s) 43, 434
Hpy188I TCNGA 4 cut(s) 82, 256, 336, 411
Hpy188III TCNNGA 3 cut(s) 52, 282, 302
Hpy8I GTNNAC 2 cut(s) 43, 434
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 354
HpyCH4V TGCA 4 cut(s) 14, 95, 358, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 422
HpyF3I CTNAG 3 cut(s) 253, 333, 408
Hsp92II CATG 1 cut(s) 189
HspAI GCGC 1 cut(s) 344
LpnPI CCDG 7 cut(s) 140, 174, 194, 221, 267, 306, 415
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 115
MboII GAAGA 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 395
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 3 cut(s) 56, 177, 285
MluNI TGGCCA 1 cut(s) 275
MnlI CCTC 2 cut(s) 162, 417
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 230
Msp20I TGGCCA 1 cut(s) 275
MspI CCGG 1 cut(s) 402
MspR9I CCNGG 2 cut(s) 209, 403
Mva1269I GAATGC 1 cut(s) 425
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 272, 422
NciI CCSGG 1 cut(s) 403
NlaIII CATG 1 cut(s) 189
NlaIV GGNNCC 3 cut(s) 159, 393, 394
NmuCI GTSAC 1 cut(s) 115
PctI GAATGC 1 cut(s) 425
PfeI GAWTC 1 cut(s) 442
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 3 cut(s) 159, 393, 394
PspOMI GGGCCC 1 cut(s) 391
PspPI GGNCC 4 cut(s) 157, 391, 392, 404
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 1 cut(s) 122
Sau96I GGNCC 4 cut(s) 157, 391, 392, 404
ScrFI CCNGG 2 cut(s) 209, 403
SduI GDGCHC 1 cut(s) 395
SetI ASST 9 cut(s) 91, 122, 224, 244, 254, 326, 334, 422, 439
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 230
Sse9I AATT 3 cut(s) 56, 177, 285
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 2 cut(s) 207, 401
TaaI ACNGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 66
TasI AATT 3 cut(s) 56, 177, 285
TatI WGTACW 1 cut(s) 295
TfiI GAWTC 1 cut(s) 442
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 1 cut(s) 365
TseFI GTSAC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 1 cut(s) 177
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.