Rh5DG078500

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013290
Physical Location & Seq
Forward (+)
6882606 .. 6886268
3663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG078500.1

Sequence Viewer

Length: 1296 bp
ATGTCTGACTCTACTGCATCGTCTTCTTCTTCTCCTAAATGGCTATATTCATATATAAAGCTTCGCTTTTTCAATCGCATCCGGAGGTTCCTGCGCTCCAAGAAAAGTAACCGGAAGAGGAACACGACGTCGTCTGATCCTCACCTCTTAGATACGTCGAGCTTGAGACCGGTCAAGGTTATGGTGAAGGAGAGCAGTAGTGATCATGAGGATGATGGTTTGGGGTTGCAGAGGGCGGTGAAGAAGCTTCACTTTGGGAGCTGGGAAGAGAAGGAGTTGGCGGCTGAGGAGATTGGGACGTTGGCTATGGATGACGTCAAGGTGAGGAAATTGGTAGGTGGACTCGGGATTATACCAGTGTTGGTGTCCATGGCGGCGTCGGAGGTGGTTGATCGCCGGCGAGTGGCCGTTTCCGCCTTGGTTCAGCTTGCCAATGGAACTTACACGAACAAGGCTCTCATGGTTGAGGCAGGAATCTTCTCCAAACTACCAAAAGACATCAACATTCTCGATGAGCCAACAAGGCATCAATTTGCAGAACTGCTCATGTTGTTATCTTCACTTGCAAATACCCCATTTCCTCTGCCCTCATCGGAAATTGTCCCGTTTCTAGTTGGCATTCTAGAGTCAGATTCGACCAATGTCGAAACCAAACAGTCATGTTTGGGTACACTTCACAACCTATCCACCATGTTGGACAATGCAGGAGATTTAGTCTCCAATGGGGTGGTGGACACACTCTTGAAATTGTCTTCCGATAAAGAAATCTCCGAGAAAGCTCTTGCAACATTGGGGAACTTGGTTGTGACCTTAATGGGGAAGAAGGCTATGGAAAATAGTCCTCTGGTCCCAGAGAGTTTGATAGAAATTTTGACATGGGATGAAAAATCCAAATGCCAGGAACTTTCAAGCTACATTCTAATGATTTTAGCTCATCAAAGCTCAGACCAAAGAGCGAAAATGGCCAAGTCTGGAATTGTGCCTGTACTTCTTGAAGTGGCATTATTGGGTAGCTCTCTAGCTCAGAAAAGAGCGCTAAAACTGTTGCAGTGGTTCAAGGACGAAAGGCAAGCGAAAATGGGCCCCCATTCCGGGCCTCAGACTGCAAGGTTCGCATTCGGTTCACCTGTGAATCCGCTGGAGGCTCAACAAGGGAAGAAGATGATGAAGAATTTGGTGAAACAGAGTTTACATAAGAATATGGAGATGATAACGCGGCGGGCGAGTGCTTCTGGAGACTCTTCTAAGATTAAGGCTTTGATTATTAGCACAAGCTCTAAGAGTTTGCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

431

Amino Acids

47.33

Weight (kDa)

9.46

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_ARMC5 PF24768 197 - 338 4.7e-08 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013290)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27430
fragaria_vesca FvH4_3g07900
malus_domestica MD05G1302200.v1.1 MD10G1280900.v1.1
prunus_persica Prupe.4G060200_v2.0.a1
pyrus_communis pycom05g27980
rosa_chinensis RchiOBHm_Chr5g0010651
rosa_laevigata RLG00000031769
rosa_multiflora Rmu_co8124782.1_g000001 Rmu_sc0006103.1_g000004 Rmu_sc0014635.1_g000002
rosa_roxburghii Rroxscaffold_1G00065720
rosa_rugosa Rorug04G0451500
rosa_samantha Rh5AG083100 Rh5BG078400 Rh5CG091100 Rh5DG078500
rosa_wichuraiana Rw0G000670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 131, 318
AccII CGCG 1 cut(s) 1216
AccIII TCCGGA 1 cut(s) 81
AciI CCGC 7 cut(s) 236, 281, 374, 414, 1136, 1216, 1219
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 2 cut(s) 405, 963
AcsI RAATTY 2 cut(s) 867, 1171
AcyI GRCGYC 3 cut(s) 128, 315, 377
AfaI GTAC 2 cut(s) 670, 987
AfeI AGCGCT 1 cut(s) 1035
AfiI CCNNNNNNNGG 4 cut(s) 403, 816, 1091, 1092
AgeI ACCGGT 1 cut(s) 169
AgsI TTSAA 5 cut(s) 73, 745, 909, 995, 1057
AjnI CCWGG 1 cut(s) 897
Alw26I GTCTC 3 cut(s) 160, 721, 1230
AlwI GGATC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 344
Aor13HI TCCGGA 1 cut(s) 81
Aor51HI AGCGCT 1 cut(s) 1035
AoxI GGCC 4 cut(s) 405, 963, 1081, 1094
ApaI GGGCCC 1 cut(s) 1085
ApoI RAATTY 2 cut(s) 867, 1171
AsiGI ACCGGT 1 cut(s) 169
AspLEI GCGC 2 cut(s) 96, 1036
AspS9I GGNCC 4 cut(s) 847, 1081, 1082, 1094
AsuC2I CCSGG 1 cut(s) 1093
AsuHPI GGTGA 6 cut(s) 134, 196, 250, 334, 1116, 1189
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 1 cut(s) 847
BaeGI GKGCMC 1 cut(s) 1085
BalI TGGCCA 1 cut(s) 965
BanII GRGCYC 1 cut(s) 1085
BbsI GAAGAC 2 cut(s) 15, 744
BbvCI CCTCAGC 1 cut(s) 285
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 392
BciT130I CCWGG 1 cut(s) 899
BclI TGATCA 1 cut(s) 202
BcnI CCSGG 1 cut(s) 1093
BcoDI GTCTC 3 cut(s) 160, 721, 1230
BfaI CTAG 3 cut(s) 611, 623, 1019
BfoI RGCGCY 1 cut(s) 1037
BglI GCCNNNNNGGC 1 cut(s) 523
BisI GCNGC 3 cut(s) 282, 375, 1217
BlsI GCNGC 3 cut(s) 283, 376, 1218
Bme1390I CCNGG 2 cut(s) 899, 1093
Bme18I GGWCC 1 cut(s) 847
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 4 cut(s) 847, 1081, 1082, 1094
BmiI GGNNCC 4 cut(s) 89, 849, 1083, 1084
BmrFI CCNGG 2 cut(s) 899, 1093
BmsI GCATC 3 cut(s) 26, 87, 535
BoxI GACNNNNGTC 1 cut(s) 641
BpiI GAAGAC 2 cut(s) 15, 744
BpmI CTGGAG 2 cut(s) 1160, 1254
Bpu10I CCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 1093
BsaHI GRCGYC 3 cut(s) 128, 315, 377
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 369, 417
BsaWI WCCGGW 3 cut(s) 81, 111, 169
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bsc4I CCNNNNNNNGG 4 cut(s) 403, 816, 1091, 1092
Bse118I RCCGGY 2 cut(s) 169, 396
Bse1I ACTGG 1 cut(s) 356
BseAI TCCGGA 1 cut(s) 81
BseBI CCWGG 1 cut(s) 899
BseDI CCNNGG 2 cut(s) 369, 417
BseGI GGATG 4 cut(s) 78, 217, 316, 886
BseLI CCNNNNNNNGG 4 cut(s) 403, 816, 1091, 1092
BseMII CTCAG 4 cut(s) 276, 957, 1037, 1112
BseNI ACTGG 1 cut(s) 356
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 1085
BseYI CCCAGC 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 1216
BshFI GGCC 4 cut(s) 407, 965, 1083, 1096
BshTI ACCGGT 1 cut(s) 169
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 5 cut(s) 82, 112, 170, 397, 1092
BslFI GGGAC 3 cut(s) 310, 587, 833
BslI CCNNNNNNNGG 4 cut(s) 403, 816, 1091, 1092
BsmAI GTCTC 3 cut(s) 160, 721, 1230
BsmFI GGGAC 3 cut(s) 310, 587, 833
BsmI GAATGC 2 cut(s) 618, 1115
BsnI GGCC 4 cut(s) 407, 965, 1083, 1096
Bso31I GGTCTC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 344
Bsp120I GGGCCC 1 cut(s) 1081
Bsp1286I GDGCHC 1 cut(s) 1085
Bsp13I TCCGGA 1 cut(s) 81
Bsp143I GATC 3 cut(s) 136, 202, 391
Bsp19I CCATGG 1 cut(s) 369
BspACI CCGC 7 cut(s) 236, 281, 374, 414, 1136, 1216, 1219
BspANI GGCC 4 cut(s) 407, 965, 1083, 1096
BspCNI CTCAG 4 cut(s) 277, 956, 1036, 1111
BspEI TCCGGA 1 cut(s) 81
BspFNI CGCG 1 cut(s) 1216
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 4 cut(s) 89, 849, 1083, 1084
BspPI GGATC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 160
BsrFI RCCGGY 2 cut(s) 169, 396
BsrI ACTGG 1 cut(s) 356
BssAI RCCGGY 2 cut(s) 169, 396
BssECI CCNNGG 2 cut(s) 369, 417
BssMI GATC 3 cut(s) 136, 202, 391
BssNI GRCGYC 3 cut(s) 128, 315, 377
BssT1I CCWWGG 2 cut(s) 369, 417
Bst2UI CCWGG 1 cut(s) 899
Bst4CI ACNGT 2 cut(s) 657, 1044
Bst6I CTCTTC 3 cut(s) 110, 261, 1246
BstACI GRCGYC 3 cut(s) 128, 315, 377
BstC8I GCNNGC 4 cut(s) 398, 429, 1071, 1221
BstDEI CTNAG 7 cut(s) 148, 285, 943, 1023, 1098, 1245, 1278
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 4 cut(s) 78, 217, 316, 886
BstFNI CGCG 1 cut(s) 1216
BstH2I RGCGCY 1 cut(s) 1037
BstHHI GCGC 2 cut(s) 96, 1036
BstKTI GATC 3 cut(s) 139, 205, 394
BstMAI GTCTC 3 cut(s) 160, 721, 1230
BstMBI GATC 3 cut(s) 136, 202, 391
BstMWI GCNNNNNNNGC 4 cut(s) 413, 523, 962, 1112
BstNI CCWGG 1 cut(s) 899
BstPAI GACNNNNGTC 1 cut(s) 641
BstSCI CCNGG 2 cut(s) 897, 1091
BstSLI GKGCMC 1 cut(s) 1085
BstUI CGCG 1 cut(s) 1216
BstV2I GAAGAC 2 cut(s) 15, 744
BstXI CCANNNNNNTGG 2 cut(s) 694, 727
BsuRI GGCC 4 cut(s) 407, 965, 1083, 1096
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 4 cut(s) 78, 217, 316, 886
BtsI GCAGTG 1 cut(s) 1055
BtsIMutI CAGTG 2 cut(s) 363, 1055
Cac8I GCNNGC 4 cut(s) 398, 429, 1071, 1221
CciI TCATGA 1 cut(s) 205
CfoI GCGC 2 cut(s) 96, 1036
Cfr10I RCCGGY 2 cut(s) 169, 396
Cfr13I GGNCC 4 cut(s) 847, 1081, 1082, 1094
CseI GACGC 1 cut(s) 366
Csp6I GTAC 2 cut(s) 669, 986
CspAI ACCGGT 1 cut(s) 169
CviAII CATG 7 cut(s) 206, 370, 460, 547, 660, 691, 876
CviQI GTAC 2 cut(s) 669, 986
DdeI CTNAG 7 cut(s) 148, 285, 943, 1023, 1098, 1245, 1278
DpnI GATC 3 cut(s) 138, 204, 393
DpnII GATC 3 cut(s) 136, 202, 391
EaeI YGGCCR 2 cut(s) 405, 963
Eam1104I CTCTTC 3 cut(s) 110, 261, 1246
EarI CTCTTC 3 cut(s) 110, 261, 1246
EciI GGCGGA 1 cut(s) 403
Eco130I CCWWGG 2 cut(s) 369, 417
Eco24I GRGCYC 1 cut(s) 1085
Eco31I GGTCTC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 847
Eco47III AGCGCT 1 cut(s) 1035
Eco88I CYCGRG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 1082
EcoRII CCWGG 1 cut(s) 897
EcoT14I CCWWGG 2 cut(s) 369, 417
EcoT38I GRGCYC 1 cut(s) 1085
ErhI CCWWGG 2 cut(s) 369, 417
FaeI CATG 7 cut(s) 209, 373, 463, 550, 663, 694, 879
FalI AAGNNNNNCTT 4 cut(s) 50, 82, 236, 268
FaqI GGGAC 3 cut(s) 310, 587, 833
FatI CATG 7 cut(s) 205, 369, 459, 546, 659, 690, 875
FauI CCCGC 1 cut(s) 1212
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 3 cut(s) 282, 375, 1217
FokI GGATG 4 cut(s) 65, 224, 323, 893
FriOI GRGCYC 1 cut(s) 1085
Fsp4HI GCNGC 3 cut(s) 282, 375, 1217
FspBI CTAG 3 cut(s) 611, 623, 1019
GlaI GCGC 2 cut(s) 95, 1035
GluI GCNGC 3 cut(s) 282, 375, 1217
GsaI CCCAGC 1 cut(s) 265
GsuI CTGGAG 2 cut(s) 1160, 1254
HaeII RGCGCY 1 cut(s) 1037
HaeIII GGCC 4 cut(s) 407, 965, 1083, 1096
HapII CCGG 5 cut(s) 82, 112, 170, 397, 1092
HgaI GACGC 1 cut(s) 366
HhaI GCGC 2 cut(s) 96, 1036
Hin1I GRCGYC 3 cut(s) 128, 315, 377
Hin1II CATG 7 cut(s) 209, 373, 463, 550, 663, 694, 879
Hin6I GCGC 2 cut(s) 94, 1034
HinP1I GCGC 2 cut(s) 94, 1034
HindIII AAGCTT 2 cut(s) 59, 245
HinfI GANTC 7 cut(s) 8, 342, 474, 626, 632, 1132, 1238
HpaII CCGG 5 cut(s) 82, 112, 170, 397, 1092
HphI GGTGA 6 cut(s) 134, 196, 250, 334, 1116, 1189
Hpy166II GTNNAC 5 cut(s) 341, 671, 733, 1124, 1190
Hpy188III TCNNGA 9 cut(s) 82, 206, 346, 509, 623, 742, 972, 992, 1233
Hpy8I GTNNAC 5 cut(s) 341, 671, 733, 1124, 1190
Hpy99I CGWCG 4 cut(s) 130, 133, 160, 382
HpyAV CCTTC 3 cut(s) 181, 265, 817
HpyCH4III ACNGT 2 cut(s) 657, 1044
HpyCH4IV ACGT 4 cut(s) 128, 155, 299, 315
HpyCH4V TGCA 8 cut(s) 17, 229, 536, 566, 704, 785, 1048, 1106
HpyF10VI GCNNNNNNNGC 4 cut(s) 413, 523, 962, 1112
HpyF3I CTNAG 7 cut(s) 148, 285, 943, 1023, 1098, 1245, 1278
HpySE526I ACGT 4 cut(s) 128, 155, 299, 315
Hsp92I GRCGYC 3 cut(s) 128, 315, 377
Hsp92II CATG 7 cut(s) 209, 373, 463, 550, 663, 694, 879
HspAI GCGC 2 cut(s) 94, 1034
Kpn2I TCCGGA 1 cut(s) 81
KroI GCCGGC 1 cut(s) 396
KroNI GCCGGC 1 cut(s) 398
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 3 cut(s) 136, 202, 391
LmnI GCTCC 2 cut(s) 101, 258
LweI GCATC 3 cut(s) 26, 87, 535
MaeI CTAG 3 cut(s) 611, 623, 1019
MaeII ACGT 4 cut(s) 128, 155, 299, 315
MaeIII GTNAC 2 cut(s) 107, 805
MalI GATC 3 cut(s) 138, 204, 393
MboI GATC 3 cut(s) 136, 202, 391
MhlI GDGCHC 1 cut(s) 1085
MlsI TGGCCA 1 cut(s) 965
MluCI AATT 7 cut(s) 329, 530, 597, 746, 867, 975, 1171
MluNI TGGCCA 1 cut(s) 965
MlyI GAGTC 4 cut(s) 2, 336, 635, 1232
MmeI TCCRAC 2 cut(s) 360, 675
Mox20I TGGCCA 1 cut(s) 965
MreI CGCCGGCG 1 cut(s) 396
MroI TCCGGA 1 cut(s) 81
MroNI GCCGGC 1 cut(s) 396
MscI TGGCCA 1 cut(s) 965
MseI TTAA 2 cut(s) 812, 1251
MslI CAYNNNNRTG 2 cut(s) 210, 920
Msp20I TGGCCA 1 cut(s) 965
MspA1I CMGCKG 1 cut(s) 1138
MspI CCGG 5 cut(s) 82, 112, 170, 397, 1092
MspR9I CCNGG 2 cut(s) 899, 1093
Mva1269I GAATGC 2 cut(s) 618, 1115
MvaI CCWGG 1 cut(s) 899
MvnI CGCG 1 cut(s) 1216
MwoI GCNNNNNNNGC 4 cut(s) 413, 523, 962, 1112
NaeI GCCGGC 1 cut(s) 398
NciI CCSGG 1 cut(s) 1093
NcoI CCATGG 1 cut(s) 369
NdeII GATC 3 cut(s) 136, 202, 391
NgoMIV GCCGGC 1 cut(s) 396
NlaIII CATG 7 cut(s) 209, 373, 463, 550, 663, 694, 879
NlaIV GGNNCC 4 cut(s) 89, 849, 1083, 1084
NmuCI GTSAC 1 cut(s) 805
PagI TCATGA 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 1220
PctI GAATGC 2 cut(s) 618, 1115
PdiI GCCGGC 1 cut(s) 398
PfeI GAWTC 3 cut(s) 474, 632, 1132
PflFI GACNNNGTC 1 cut(s) 130
PinAI ACCGGT 1 cut(s) 169
PkrI GCNGC 3 cut(s) 283, 376, 1218
PleI GAGTC 4 cut(s) 2, 336, 634, 1232
PpsI GAGTC 4 cut(s) 2, 336, 634, 1232
PshAI GACNNNNGTC 1 cut(s) 641
Psp6I CCWGG 1 cut(s) 897
PspFI CCCAGC 1 cut(s) 261
PspGI CCWGG 1 cut(s) 897
PspN4I GGNNCC 4 cut(s) 89, 849, 1083, 1084
PspOMI GGGCCC 1 cut(s) 1081
PspPI GGNCC 4 cut(s) 847, 1081, 1082, 1094
PsyI GACNNNGTC 1 cut(s) 130
RsaI GTAC 2 cut(s) 670, 987
RsaNI GTAC 2 cut(s) 669, 986
RseI CAYNNNNRTG 2 cut(s) 210, 920
SaqAI TTAA 2 cut(s) 812, 1251
SatI GCNGC 3 cut(s) 282, 375, 1217
Sau3AI GATC 3 cut(s) 136, 202, 391
Sau96I GGNCC 4 cut(s) 847, 1081, 1082, 1094
SchI GAGTC 4 cut(s) 2, 336, 635, 1232
ScrFI CCNGG 2 cut(s) 899, 1093
SduI GDGCHC 1 cut(s) 1085
SfaNI GCATC 3 cut(s) 26, 87, 535
SgrAI CRCCGGYG 1 cut(s) 396
SinI GGWCC 1 cut(s) 847
SmiMI CAYNNNNRTG 2 cut(s) 210, 920
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 7 cut(s) 329, 530, 597, 746, 867, 975, 1171
SsiI CCGC 7 cut(s) 236, 281, 374, 414, 1136, 1216, 1219
SspMI CTAG 3 cut(s) 611, 623, 1019
StyD4I CCNGG 2 cut(s) 897, 1091
StyI CCWWGG 2 cut(s) 369, 417
TaaI ACNGT 2 cut(s) 657, 1044
TaiI ACGT 4 cut(s) 131, 158, 302, 318
TaqI TCGA 4 cut(s) 158, 510, 635, 645
TasI AATT 7 cut(s) 329, 530, 597, 746, 867, 975, 1171
TatI WGTACW 1 cut(s) 985
TauI GCSGC 3 cut(s) 284, 377, 1219
TfiI GAWTC 3 cut(s) 474, 632, 1132
Tru1I TTAA 2 cut(s) 812, 1251
Tru9I TTAA 2 cut(s) 812, 1251
TscAI CASTG 2 cut(s) 363, 1055
TseFI GTSAC 1 cut(s) 805
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 3 cut(s) 39, 897, 1181
TspRI CASTG 2 cut(s) 363, 1055
Tth111I GACNNNGTC 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 847
XapI RAATTY 2 cut(s) 867, 1171
XbaI TCTAGA 1 cut(s) 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 727
XspI CTAG 3 cut(s) 611, 623, 1019
ZraI GACGTC 2 cut(s) 129, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.