Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006764

Physical Location & Seq

Genomic Coordinates Reverse (-)

2955958 .. 2958104

Gene Structure 2147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1024100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGAGAAAATCGGGCATACACATCACTAGACATGGTTGCCTGTATGAGACAGCACCAGTCTATGTGACTGATCAACCTAATTTTCTCAACTCTGCTGTTAGAGCTGTTACACAACTTGGGCCTCATGAGTTACTACGAGCACTGAAGAAAATTGAAAAGGACATGGGTCGTACTGACGGCATAAGGTATGGTCCCAGGCCAAACGACCTAGATATATTGTTCCATGGAAAGCGAAGAATTAGTTCTGAGATTCTTAGGGTTCCCCATGAACAAATTTGGGAAAGACCATTTTTAATGGCCCCACTAATGGATTTACTGGGGTCAACTATTGACAGCGATACAGTTTCTTGTTGGCATTCTTTCTCACTGCATTCTGGTGGGCTTTTTGATTCCTGGGAGAAATTGGGCGGTGAACCACTCGTTGGAAAGGAAGGACTGAAGAGGGTTTTACCCATCGGAAATGGCTTTTGGGACTGGTCAACGAAAACCGCGGTAATGGGTATGTTTAATCTGACCCCAGATCGTTTTAGTGATGGAGGAAAGTTTCAGTCTGTAGGCGCAGCAATTTCTCAGGTTCGCTCAATGATTTCAGAAGGGGCAGATATGATTGATATTGGTGCACAATCTACGCGGCCAATGGCTTCTAGGATTTCAGTTCAACAAGGATTGGATAGACTAACTCCTGTCCTAGAAGCGGTTCTTGGGCTGCCTGAAGCAGAGGGAAAGATTGTATCTGTGGACACATTTTATTCAGAAGGTGCAGCAGAAGCAAACAGTGAGAACCTGCAATATGATAATGCTTGTAAGCAGGTTGCCTCGGAGTTATACTTGAAAGTGAGAGAAGCTGAAATATTAGGCATCCCAGCTTGGAGGATGATAATTGACACTGGACTTGGATTTTCAAAGAACCGTGAACACAATTTGGAAGTCTTAATGGGGTTACCAAATATTCAAGCAGAGATTGGGAGGAAAAGTTTGGCTTTGTCTCGTGCGCCCATACTAATTGGACCTTCCAGAAAGAAATTTTTAGGTGAAGTTTGTAATCGCACTGCTGCAACTGAGAGAGATGCTGCTACTGTTGCTTCTGTCACTGCTGCAGTTCTTGGTGGAGCAAATATTGTAAGAGTACATAATGTAAGAGATAATGTAGATGCTGTGAAGCTATGTGATGCAATACTGAGACAAAGGAGATCTATTCCTCCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003848 GO:0004156 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016772 GO:0016778 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046653 GO:0046654 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 map00790 map01100

Pfam Domains

Protein Families

HPPK Pterin_bind

Protein Analysis

403

Amino Acids

44.11

Weight (kDa)

8.22

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HPPK	PF01288	7 - 105	5.5e-24	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
Pterin_bind	PF00809	166 - 257	1.6e-25	Pterin binding enzyme
Pterin_bind	PF00809	259 - 377	2.4e-25	Pterin binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30000 AT4G30000
fragaria_vesca	FvH4_4g10620
malus_domestica	MD06G1024100.v1.1 MD16G1281400.v1.1
prunus_persica	Prupe.1G566200_v2.0.a1 Prupe.1G566200_v2.0.a1
pyrus_communis	pycom1546g00020 pycom15g25320 pycom16g22310
rosa_chinensis	RchiOBHm_Chr2g0139531 RchiOBHm_Chr2g0139541 RchiOBHm_Chr7g0212391
rosa_laevigata	RLG00000002893
rosa_multiflora	Rmu_sc0038441.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246870
rosa_rugosa	Rorug07G0133500 Rorug07G0133600 Rorug07G0133700
rosa_samantha	Rh2BG418400 Rh2DG427200 Rh7AG266500 Rh7BG260600 Rh7CG283400 Rh7DG273500
rosa_wichuraiana	Rw7G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	792, 799
AccB7I	CCANNNNNTGG	1 cut(s)	422
AccII	CGCG	2 cut(s)	491, 631
AciI	CCGC	5 cut(s)	408, 489, 491, 631, 695
AcoI	YGGCCR	1 cut(s)	632
AcsI	RAATTY	2 cut(s)	273, 1022
AcuI	CTGAAG	3 cut(s)	164, 458, 732
AfaI	GTAC	2 cut(s)	172, 1128
AfiI	CCNNNNNNNGG	3 cut(s)	307, 422, 694
AgsI	TTSAA	5 cut(s)	155, 659, 832, 903, 953
AjnI	CCWGG	2 cut(s)	194, 392
AjuI	GAANNNNNNNTTGG	6 cut(s)	405, 437, 451, 483, 684, 716
AluBI	AGCT	4 cut(s)	104, 845, 866, 1162
AluI	AGCT	4 cut(s)	104, 845, 866, 1162
Alw21I	GWGCWC	2 cut(s)	142, 622
Alw26I	GTCTC	3 cut(s)	41, 990, 1174
Alw44I	GTGCAC	1 cut(s)	618
AoxI	GGCC	4 cut(s)	119, 197, 297, 632
ApaLI	GTGCAC	1 cut(s)	618
ApeKI	GCWGC	6 cut(s)	560, 706, 761, 1052, 1070, 1094
ApoI	RAATTY	2 cut(s)	273, 1022
Asp700I	GAANNNNTTC	2 cut(s)	241, 696
AspLEI	GCGC	2 cut(s)	560, 994
AspS9I	GGNCC	4 cut(s)	119, 191, 298, 1007
AsuHPI	GGTGA	2 cut(s)	422, 1043
AvaII	GGWCC	2 cut(s)	191, 1007
BaeGI	GKGCMC	1 cut(s)	622
BauI	CACGAG	1 cut(s)	987
Bbv12I	GWGCWC	2 cut(s)	142, 622
BbvI	GCAGC	6 cut(s)	572, 693, 773, 1039, 1057, 1081
BccI	CCATC	2 cut(s)	461, 527
BceAI	ACGGC	1 cut(s)	193
BciT130I	CCWGG	2 cut(s)	196, 394
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	3 cut(s)	41, 990, 1174
BfaI	CTAG	4 cut(s)	27, 209, 645, 689
BfmI	CTRYAG	2 cut(s)	552, 1095
BfuAI	ACCTGC	2 cut(s)	792, 799
BglII	AGATCT	1 cut(s)	1190
BisI	GCNGC	7 cut(s)	561, 632, 707, 762, 1053, 1071, 1095
BlsI	GCNGC	7 cut(s)	562, 633, 708, 763, 1054, 1072, 1096
Bme1390I	CCNGG	2 cut(s)	196, 394
Bme18I	GGWCC	2 cut(s)	191, 1007
BmgT120I	GGNCC	4 cut(s)	119, 191, 298, 1007
BmiI	GGNNCC	3 cut(s)	193, 261, 300
BmrFI	CCNGG	2 cut(s)	196, 394
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	4 cut(s)	867, 1057, 1141, 1159
BmuI	ACTGGG	1 cut(s)	326
BoxI	GACNNNNGTC	1 cut(s)	165
BsaJI	CCNNGG	5 cut(s)	194, 223, 393, 489, 816
BsaXI	ACNNNNNCTCC	2 cut(s)	958, 988
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 422, 694
Bse1I	ACTGG	4 cut(s)	56, 321, 479, 892
BseBI	CCWGG	2 cut(s)	196, 394
BseDI	CCNNGG	5 cut(s)	194, 223, 393, 489, 816
BseGI	GGATG	2 cut(s)	858, 879
BseLI	CCNNNNNNNGG	3 cut(s)	307, 422, 694
BseMII	CTCAG	4 cut(s)	237, 584, 1050, 1169
BseNI	ACTGG	4 cut(s)	56, 321, 479, 892
BseSI	GKGCMC	1 cut(s)	622
BseXI	GCAGC	6 cut(s)	572, 693, 773, 1039, 1057, 1081
BseYI	CCCAGC	1 cut(s)	862
BsgI	GTGCAG	1 cut(s)	780
Bsh1236I	CGCG	2 cut(s)	491, 631
BshFI	GGCC	4 cut(s)	121, 199, 299, 634
BsiHKAI	GWGCWC	2 cut(s)	142, 622
BslFI	GGGAC	2 cut(s)	177, 485
BslI	CCNNNNNNNGG	3 cut(s)	307, 422, 694
BsmAI	GTCTC	3 cut(s)	41, 990, 1174
BsmFI	GGGAC	2 cut(s)	177, 485
BsmI	GAATGC	2 cut(s)	355, 370
BsnI	GGCC	4 cut(s)	121, 199, 299, 634
Bsp1286I	GDGCHC	2 cut(s)	142, 622
Bsp143I	GATC	3 cut(s)	70, 520, 1190
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	5 cut(s)	408, 489, 491, 631, 695
BspANI	GGCC	4 cut(s)	121, 199, 299, 634
BspCNI	CTCAG	4 cut(s)	238, 583, 1051, 1170
BspFNI	CGCG	2 cut(s)	491, 631
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	193, 261, 300
BspMAI	CTGCAG	1 cut(s)	1099
BspMI	ACCTGC	2 cut(s)	792, 799
BsrI	ACTGG	4 cut(s)	56, 321, 479, 892
BssECI	CCNNGG	5 cut(s)	194, 223, 393, 489, 816
BssMI	GATC	3 cut(s)	70, 520, 1190
BssSI	CACGAG	1 cut(s)	987
BssT1I	CCWWGG	1 cut(s)	223
Bst2BI	CACGAG	1 cut(s)	987
Bst2UI	CCWGG	2 cut(s)	196, 394
Bst4CI	ACNGT	4 cut(s)	343, 776, 911, 1078
Bst6I	CTCTTC	1 cut(s)	434
BstDEI	CTNAG	5 cut(s)	246, 254, 570, 1059, 1178
BstDSI	CCRYGG	2 cut(s)	223, 489
BstEII	GGTNACC	1 cut(s)	939
BstF5I	GGATG	2 cut(s)	858, 879
BstFNI	CGCG	2 cut(s)	491, 631
BstHHI	GCGC	2 cut(s)	560, 994
BstKTI	GATC	3 cut(s)	73, 523, 1193
BstMAI	GTCTC	3 cut(s)	41, 990, 1174
BstMBI	GATC	3 cut(s)	70, 520, 1190
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 767, 1079
BstNI	CCWGG	2 cut(s)	196, 394
BstPAI	GACNNNNGTC	1 cut(s)	165
BstPI	GGTNACC	1 cut(s)	939
BstSCI	CCNGG	2 cut(s)	194, 392
BstSFI	CTRYAG	2 cut(s)	552, 1095
BstSLI	GKGCMC	1 cut(s)	622
BstUI	CGCG	2 cut(s)	491, 631
BstV1I	GCAGC	6 cut(s)	572, 693, 773, 1039, 1057, 1081
BstX2I	RGATCY	1 cut(s)	1190
BstYI	RGATCY	1 cut(s)	1190
BsuRI	GGCC	4 cut(s)	121, 199, 299, 634
BtgI	CCRYGG	2 cut(s)	223, 489
BtsCI	GGATG	2 cut(s)	858, 879
BtsI	GCAGTG	3 cut(s)	365, 1047, 1089
BtsIMutI	CAGTG	6 cut(s)	140, 365, 781, 885, 1047, 1089
BveI	ACCTGC	2 cut(s)	792, 799
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	2 cut(s)	560, 994
Cfr13I	GGNCC	4 cut(s)	119, 191, 298, 1007
Cfr42I	CCGCGG	1 cut(s)	492
Csp6I	GTAC	2 cut(s)	171, 1127
CviAII	CATG	5 cut(s)	32, 125, 163, 224, 266
CviQI	GTAC	2 cut(s)	171, 1127
DdeI	CTNAG	5 cut(s)	246, 254, 570, 1059, 1178
DpnI	GATC	3 cut(s)	72, 522, 1192
DpnII	GATC	3 cut(s)	70, 520, 1190
EaeI	YGGCCR	1 cut(s)	632
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	191, 1007
Eco57I	CTGAAG	3 cut(s)	164, 458, 732
Eco91I	GGTNACC	1 cut(s)	939
EcoO65I	GGTNACC	1 cut(s)	939
EcoRII	CCWGG	2 cut(s)	194, 392
EcoT14I	CCWWGG	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	5 cut(s)	35, 128, 166, 227, 269
FalI	AAGNNNNNCTT	4 cut(s)	684, 716, 964, 996
FaqI	GGGAC	2 cut(s)	177, 485
FatI	CATG	5 cut(s)	31, 124, 162, 223, 265
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	7 cut(s)	561, 632, 707, 762, 1053, 1071, 1095
FokI	GGATG	2 cut(s)	845, 886
Fsp4HI	GCNGC	7 cut(s)	561, 632, 707, 762, 1053, 1071, 1095
FspBI	CTAG	4 cut(s)	27, 209, 645, 689
GlaI	GCGC	2 cut(s)	559, 993
GluI	GCNGC	7 cut(s)	561, 632, 707, 762, 1053, 1071, 1095
GsaI	CCCAGC	1 cut(s)	866
HaeIII	GGCC	4 cut(s)	121, 199, 299, 634
HhaI	GCGC	2 cut(s)	560, 994
Hin1II	CATG	5 cut(s)	35, 128, 166, 227, 269
Hin6I	GCGC	2 cut(s)	558, 992
HinP1I	GCGC	2 cut(s)	558, 992
HincII	GTYRAC	2 cut(s)	324, 480
HindII	GTYRAC	2 cut(s)	324, 480
HinfI	GANTC	2 cut(s)	250, 389
HphI	GGTGA	2 cut(s)	422, 1043
Hpy166II	GTNNAC	6 cut(s)	324, 413, 480, 620, 739, 914
Hpy188I	TCNGA	6 cut(s)	247, 458, 513, 592, 754, 820
Hpy188III	TCNNGA	2 cut(s)	125, 1014
Hpy8I	GTNNAC	6 cut(s)	324, 413, 480, 620, 739, 914
HpyAV	CCTTC	4 cut(s)	425, 587, 749, 1020
HpyCH4III	ACNGT	4 cut(s)	343, 776, 911, 1078
HpyCH4V	TGCA	7 cut(s)	370, 620, 761, 787, 1055, 1097, 1172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 767, 1079
HpyF3I	CTNAG	5 cut(s)	246, 254, 570, 1059, 1178
Hsp92II	CATG	5 cut(s)	35, 128, 166, 227, 269
HspAI	GCGC	2 cut(s)	558, 992
Ksp22I	TGATCA	1 cut(s)	70
KspI	CCGCGG	1 cut(s)	492
Kzo9I	GATC	3 cut(s)	70, 520, 1190
LmnI	GCTCC	1 cut(s)	1109
Lsp1109I	GCAGC	6 cut(s)	572, 693, 773, 1039, 1057, 1081
LweI	GCATC	4 cut(s)	867, 1057, 1141, 1159
MaeI	CTAG	4 cut(s)	27, 209, 645, 689
MaeIII	GTNAC	5 cut(s)	64, 106, 129, 939, 1087
MalI	GATC	3 cut(s)	72, 522, 1192
MboI	GATC	3 cut(s)	70, 520, 1190
MboII	GAAGA	3 cut(s)	157, 246, 451
MflI	RGATCY	1 cut(s)	1190
MhlI	GDGCHC	2 cut(s)	142, 622
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	8 cut(s)	132, 435, 530, 712, 826, 864, 960, 1209
MroXI	GAANNNNTTC	2 cut(s)	241, 696
MseI	TTAA	3 cut(s)	293, 507, 932
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	196, 394
Mva1269I	GAATGC	2 cut(s)	355, 370
MvaI	CCWGG	2 cut(s)	196, 394
MvnI	CGCG	2 cut(s)	491, 631
MwoI	GCNNNNNNNGC	3 cut(s)	101, 767, 1079
NcoI	CCATGG	1 cut(s)	223
NdeII	GATC	3 cut(s)	70, 520, 1190
NlaIII	CATG	5 cut(s)	35, 128, 166, 227, 269
NlaIV	GGNNCC	3 cut(s)	193, 261, 300
NmuCI	GTSAC	2 cut(s)	64, 1087
PagI	TCATGA	1 cut(s)	124
PctI	GAATGC	2 cut(s)	355, 370
PdmI	GAANNNNTTC	2 cut(s)	241, 696
PfeI	GAWTC	2 cut(s)	250, 389
PflMI	CCANNNNNTGG	1 cut(s)	422
PkrI	GCNGC	7 cut(s)	562, 633, 708, 763, 1054, 1072, 1096
PshAI	GACNNNNGTC	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	194, 392
PspEI	GGTNACC	1 cut(s)	939
PspFI	CCCAGC	1 cut(s)	862
PspGI	CCWGG	2 cut(s)	194, 392
PspN4I	GGNNCC	3 cut(s)	193, 261, 300
PspPI	GGNCC	4 cut(s)	119, 191, 298, 1007
PstI	CTGCAG	1 cut(s)	1099
PsuI	RGATCY	1 cut(s)	1190
RsaI	GTAC	2 cut(s)	172, 1128
RsaNI	GTAC	2 cut(s)	171, 1127
RseI	CAYNNNNRTG	1 cut(s)	375
SacII	CCGCGG	1 cut(s)	492
SaqAI	TTAA	3 cut(s)	293, 507, 932
SatI	GCNGC	7 cut(s)	561, 632, 707, 762, 1053, 1071, 1095
Sau3AI	GATC	3 cut(s)	70, 520, 1190
Sau96I	GGNCC	4 cut(s)	119, 191, 298, 1007
ScrFI	CCNGG	2 cut(s)	196, 394
SduI	GDGCHC	2 cut(s)	142, 622
SfaNI	GCATC	4 cut(s)	867, 1057, 1141, 1159
SfcI	CTRYAG	2 cut(s)	552, 1095
Sfr303I	CCGCGG	1 cut(s)	492
SgrBI	CCGCGG	1 cut(s)	492
SinI	GGWCC	2 cut(s)	191, 1007
SmiMI	CAYNNNNRTG	1 cut(s)	375
SsiI	CCGC	5 cut(s)	408, 489, 491, 631, 695
SspI	AATATT	3 cut(s)	852, 949, 1117
SspMI	CTAG	4 cut(s)	27, 209, 645, 689
StyD4I	CCNGG	2 cut(s)	194, 392
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	4 cut(s)	343, 776, 911, 1078
TatI	WGTACW	1 cut(s)	1126
TauI	GCSGC	1 cut(s)	634
TfiI	GAWTC	2 cut(s)	250, 389
Tru1I	TTAA	3 cut(s)	293, 507, 932
Tru9I	TTAA	3 cut(s)	293, 507, 932
TscAI	CASTG	6 cut(s)	147, 372, 781, 892, 1054, 1096
TseFI	GTSAC	2 cut(s)	64, 1087
TseI	GCWGC	6 cut(s)	560, 706, 761, 1052, 1070, 1094
Tsp45I	GTSAC	2 cut(s)	64, 1087
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	6 cut(s)	147, 372, 781, 892, 1054, 1096
Van91I	CCANNNNNTGG	1 cut(s)	422
VneI	GTGCAC	1 cut(s)	618
VpaK11BI	GGWCC	2 cut(s)	191, 1007
XapI	RAATTY	2 cut(s)	273, 1022
XmnI	GAANNNNTTC	2 cut(s)	241, 696
XspI	CTAG	4 cut(s)	27, 209, 645, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.