Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006764

Physical Location & Seq

Genomic Coordinates Forward (+)

10500893 .. 10502035

Gene Structure 1143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0133700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGATCGACCGCTCCGATTGTGGTCAAGGTGGGAAAGAAATATTCACAATGGGAAATTGCTCTTCTCTCAAAGGAACCTGTGGGGAGTGTCCTAACTCTATCAGGGTCCTTACAGATTCTGGGGGTATCCTACAGTTTAAAGGTCCTAAGTTAGCTTCGGAAATCCTCGCTGGTTTTCCAGGCTATGGCATTTTTCAGCAGGGCAAGGCCTCGGTGCCATTGCCTGAGGAAGAGGCCTTAACTAGTGGCCAGTTCTACCTTCTTCCACTGAGGACTAAAGAGGAAGTGCCTGCTGATTATGGGGTCTCTGTAGAAGTTCAAGAAATGGGTGCTGATGAAGATTTGGAGGGTGCAGAAGAAGCTGAGCAGGTGAAGAAGTCGTTTGGGGGTGCATCGGATTATGTGGAGAATTTGGCAAATGGGTCAGGAGGAGGTCTGGAAGTAATGCCGTGTGGAGGAGATGGGGTTTGGAGAGTGAAGCTTGTGATCGACACTAAGCAGTTGGAGGAGATATTGTCTGAAGGCAACACTCTGGCTCTGATCGAGATGATGAGGACGGCTGCAACAGAGAGTGCTACACCGAAGCTGCAGAGTAAGAGCCTATGGGGTTCAGGAGGAGGTGGGGGTTGGAATTGGAAGCCTATCTTCTCCAACATGTTTAAGGCCCCCACGGCCATAACTGCCCCTATGGCCATAACTGATCACAGTGGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003848 GO:0004156 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016772 GO:0016778 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046653 GO:0046654 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 map00790 map01100

Pfam Domains

Protein Families

HPPK Pterin_bind

Protein Analysis

238

Amino Acids

25.11

Weight (kDa)

4.56

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PADRE	PF14009	17 - 197	5.6e-13	PADRE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30000 AT4G30000
fragaria_vesca	FvH4_4g10620
malus_domestica	MD06G1024100.v1.1 MD16G1281400.v1.1
prunus_persica	Prupe.1G566200_v2.0.a1 Prupe.1G566200_v2.0.a1
pyrus_communis	pycom1546g00020 pycom15g25320 pycom16g22310
rosa_chinensis	RchiOBHm_Chr2g0139531 RchiOBHm_Chr2g0139541 RchiOBHm_Chr7g0212391
rosa_laevigata	RLG00000002893
rosa_multiflora	Rmu_sc0038441.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246870
rosa_rugosa	Rorug07G0133500 Rorug07G0133600 Rorug07G0133700
rosa_samantha	Rh2BG418400 Rh2DG427200 Rh7AG266500 Rh7BG260600 Rh7CG283400 Rh7DG273500
rosa_wichuraiana	Rw7G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	214
AccB7I	CCANNNNNTGG	1 cut(s)	185
AccBSI	CCGCTC	1 cut(s)	12
AciI	CCGC	1 cut(s)	10
AcoI	YGGCCR	3 cut(s)	247, 672, 690
AcsI	RAATTY	1 cut(s)	409
AcuI	CTGAAG	1 cut(s)	540
AfiI	CCNNNNNNNGG	2 cut(s)	185, 455
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	1 cut(s)	320
AhlI	ACTAGT	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	4 cut(s)	155, 362, 481, 586
AluI	AGCT	4 cut(s)	155, 362, 481, 586
Alw26I	GTCTC	1 cut(s)	310
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	6 cut(s)	207, 234, 247, 663, 672, 690
ApeKI	GCWGC	2 cut(s)	560, 586
ApoI	RAATTY	1 cut(s)	409
AspS9I	GGNCC	3 cut(s)	106, 143, 664
AsuHPI	GGTGA	1 cut(s)	382
AvaII	GGWCC	2 cut(s)	106, 143
AxyI	CCTNAGG	1 cut(s)	225
BalI	TGGCCA	2 cut(s)	249, 692
BanI	GGYRCC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	547, 573
BccI	CCATC	1 cut(s)	455
BceAI	ACGGC	3 cut(s)	433, 573, 687
BciT130I	CCWGG	1 cut(s)	180
BciVI	GTATCC	1 cut(s)	137
BclI	TGATCA	1 cut(s)	700
BcoDI	GTCTC	1 cut(s)	310
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	1 cut(s)	243
BfmI	CTRYAG	3 cut(s)	131, 309, 587
BfuAI	ACCTGC	1 cut(s)	358
BfuI	GTATCC	1 cut(s)	137
BglI	GCCNNNNNGGC	2 cut(s)	671, 689
BisI	GCNGC	2 cut(s)	561, 587
BlpI	GCTNAGC	1 cut(s)	363
BlsI	GCNGC	2 cut(s)	562, 588
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	2 cut(s)	106, 143
BmgT120I	GGNCC	3 cut(s)	106, 143, 664
BmiI	GGNNCC	4 cut(s)	76, 107, 216, 666
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	401
Bpu1102I	GCTNAGC	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	210, 669
BsaXI	ACNNNNNCTCC	4 cut(s)	450, 480, 500, 530
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 455
Bse1I	ACTGG	1 cut(s)	250
Bse21I	CCTNAGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	210, 669
BseGI	GGATG	1 cut(s)	717
BseLI	CCNNNNNNNGG	2 cut(s)	185, 455
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	3 cut(s)	216, 260, 354
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	4 cut(s)	444, 471, 521, 630
BseXI	GCAGC	2 cut(s)	547, 573
BsgI	GTGCAG	1 cut(s)	372
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	6 cut(s)	209, 236, 249, 665, 674, 692
BshNI	GGYRCC	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	10
BslI	CCNNNNNNNGG	2 cut(s)	185, 455
BsmAI	GTCTC	1 cut(s)	310
BsnI	GGCC	6 cut(s)	209, 236, 249, 665, 674, 692
Bso31I	GGTCTC	1 cut(s)	310
Bsp143I	GATC	4 cut(s)	3, 486, 540, 700
Bsp1720I	GCTNAGC	1 cut(s)	363
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	6 cut(s)	209, 236, 249, 665, 674, 692
BspCNI	CTCAG	3 cut(s)	217, 261, 355
BspLI	GGNNCC	4 cut(s)	76, 107, 216, 666
BspMAI	CTGCAG	1 cut(s)	591
BspMI	ACCTGC	1 cut(s)	358
BspQI	GCTCTTC	1 cut(s)	67
BspT107I	GGYRCC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	310
BsrBI	CCGCTC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	210, 669
BssMI	GATC	4 cut(s)	3, 486, 540, 700
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	135, 707
Bst6I	CTCTTC	2 cut(s)	67, 225
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	5 cut(s)	147, 225, 269, 363, 495
BstDSI	CCRYGG	1 cut(s)	669
BstF5I	GGATG	1 cut(s)	717
BstKTI	GATC	4 cut(s)	6, 489, 543, 703
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	4 cut(s)	3, 486, 540, 700
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	4 cut(s)	359, 671, 680, 689
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	658
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	3 cut(s)	131, 309, 587
BstV1I	GCAGC	2 cut(s)	547, 573
Bsu36I	CCTNAGG	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	137
BsuRI	GGCC	6 cut(s)	209, 236, 249, 665, 674, 692
BtgI	CCRYGG	1 cut(s)	669
BtsCI	GGATG	1 cut(s)	717
BtsIMutI	CAGTG	2 cut(s)	266, 712
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	291
CaiI	CAGNNNCTG	1 cut(s)	119
Cfr13I	GGNCC	3 cut(s)	106, 143, 664
CviAII	CATG	1 cut(s)	655
DdeI	CTNAG	5 cut(s)	147, 225, 269, 363, 495
DpnI	GATC	4 cut(s)	5, 488, 542, 702
DpnII	GATC	4 cut(s)	3, 486, 540, 700
DraI	TTTAAA	1 cut(s)	139
EaeI	YGGCCR	3 cut(s)	247, 672, 690
Eam1104I	CTCTTC	2 cut(s)	67, 225
EarI	CTCTTC	2 cut(s)	67, 225
Eco147I	AGGCCT	2 cut(s)	209, 236
Eco31I	GGTCTC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	106, 143
Eco57I	CTGAAG	1 cut(s)	540
Eco81I	CCTNAGG	1 cut(s)	225
EcoO109I	RGGNCCY	3 cut(s)	106, 143, 664
EcoRII	CCWGG	1 cut(s)	178
FaeI	CATG	1 cut(s)	658
FaiI	YATR	8 cut(s)	186, 300, 402, 604, 656, 677, 689, 695
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FatI	CATG	1 cut(s)	654
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	2 cut(s)	561, 587
Fsp4HI	GCNGC	2 cut(s)	561, 587
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	2 cut(s)	561, 587
HaeIII	GGCC	6 cut(s)	209, 236, 249, 665, 674, 692
Hin1II	CATG	1 cut(s)	658
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	1 cut(s)	116
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	5 cut(s)	16, 160, 397, 520, 540
Hpy188III	TCNNGA	5 cut(s)	320, 426, 437, 544, 612
HpyAV	CCTTC	2 cut(s)	269, 515
HpyCH4III	ACNGT	2 cut(s)	135, 707
HpyCH4V	TGCA	4 cut(s)	353, 392, 563, 589
HpyF10VI	GCNNNNNNNGC	4 cut(s)	359, 671, 680, 689
HpyF3I	CTNAG	5 cut(s)	147, 225, 269, 363, 495
Hsp92II	CATG	1 cut(s)	658
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	4 cut(s)	3, 486, 540, 700
LguI	GCTCTTC	1 cut(s)	67
LmnI	GCTCC	1 cut(s)	17
Lsp1109I	GCAGC	2 cut(s)	547, 573
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	1 cut(s)	243
MalI	GATC	4 cut(s)	5, 488, 542, 702
MbiI	CCGCTC	1 cut(s)	12
MboI	GATC	4 cut(s)	3, 486, 540, 700
MboII	GAAGA	7 cut(s)	54, 242, 254, 350, 368, 385, 637
MlsI	TGGCCA	2 cut(s)	249, 692
MluCI	AATT	3 cut(s)	55, 409, 631
MluNI	TGGCCA	2 cut(s)	249, 692
MmeI	TCCRAC	3 cut(s)	483, 608, 675
Mox20I	TGGCCA	2 cut(s)	249, 692
MscI	TGGCCA	2 cut(s)	249, 692
MseI	TTAA	3 cut(s)	138, 239, 660
Msp20I	TGGCCA	2 cut(s)	249, 692
MspR9I	CCNGG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	4 cut(s)	359, 671, 680, 689
NdeII	GATC	4 cut(s)	3, 486, 540, 700
NlaIII	CATG	1 cut(s)	658
NlaIV	GGNNCC	4 cut(s)	76, 107, 216, 666
NspI	RCATGY	1 cut(s)	658
PaqCI	CACCTGC	1 cut(s)	358
PceI	AGGCCT	2 cut(s)	209, 236
PciI	ACATGT	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	562, 588
PpuMI	RGGWCCY	2 cut(s)	106, 143
PscI	ACATGT	1 cut(s)	654
Psp5II	RGGWCCY	2 cut(s)	106, 143
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	4 cut(s)	76, 107, 216, 666
PspPI	GGNCC	3 cut(s)	106, 143, 664
PspPPI	RGGWCCY	2 cut(s)	106, 143
PstI	CTGCAG	1 cut(s)	591
PstNI	CAGNNNCTG	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	67
SaqAI	TTAA	3 cut(s)	138, 239, 660
SatI	GCNGC	2 cut(s)	561, 587
Sau3AI	GATC	4 cut(s)	3, 486, 540, 700
Sau96I	GGNCC	3 cut(s)	106, 143, 664
ScrFI	CCNGG	1 cut(s)	180
SfaNI	GCATC	1 cut(s)	401
SfcI	CTRYAG	3 cut(s)	131, 309, 587
SfiI	GGCCNNNNNGGCC	1 cut(s)	671
SinI	GGWCC	2 cut(s)	106, 143
SpeI	ACTAGT	1 cut(s)	242
Sse9I	AATT	3 cut(s)	55, 409, 631
SseBI	AGGCCT	2 cut(s)	209, 236
SsiI	CCGC	1 cut(s)	10
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	243
StuI	AGGCCT	2 cut(s)	209, 236
StyD4I	CCNGG	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	135, 707
TaqI	TCGA	3 cut(s)	6, 489, 543
TasI	AATT	3 cut(s)	55, 409, 631
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	3 cut(s)	138, 239, 660
Tru9I	TTAA	3 cut(s)	138, 239, 660
TscAI	CASTG	2 cut(s)	273, 712
TseI	GCWGC	2 cut(s)	560, 586
TspDTI	ATGAA	1 cut(s)	351
TspRI	CASTG	2 cut(s)	273, 712
Van91I	CCANNNNNTGG	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	106, 143
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	1 cut(s)	658
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.