Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006764

Physical Location & Seq

Genomic Coordinates Forward (+)

10490498 .. 10493170

Gene Structure 2673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0133500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGAGAACAACAACAACCAATCCTTCTGGCAATTCAGCGACCAGCTTCGTGTCCAGACATCCAATCTCGCCAACCTTTCCGTCAACGACTCGATCTGGAGCAGCTCATACGGCAGCAAGAGGCCTGATGCGAGGAGGAACTTCGACATCAAGGTCGGCGGTGAGGTGAATTCTTTGATTAATTTGACCCCAAAAGGGTCTGATTTCAATGAAGGATTGGACTACAAGCAGAAAGGGTCCGACCCGAATGAGGGCTGGAACAGCTTCAAGCCCAAGGCTTCTGAATTCAGCGACAGGTTTAACAAAGCTTCAGACTTCAATTCTTTCAACCCAAAAGCTTCAGACTTCAATTCTTTCAACCCAAAAGTTTCAGACTTTAATGGGTTTAACCAGAAAGTCCCGGACTTCCATGGGTTTAATCAGAAGGTCCCGGACTTCAGTGGGTTCAACCAGAAGGTTCCGGATTTTAACGGGTTTAATCAAGGGTGGAAACTCGGGTCTTCTGCTAATGGTGGCATCAATGGAGGCTTCAACAAGGGGATTTACTCCAAGCCTGCAATTCACAACAATAACATTAACCTGAACCTGAAGCCGTACAAGAACCAGGGTGAGGAGTTCGATCTTGGAGTTAAAGCTGGGAAGAAGAACAACAATAGCAACAAGAAGAAAAATGGTGATGACAATAACAAGGACGTCAAGGGTGACAAGAAATTCAAGACACTTCCACCGTCTGAGTCTCTCCCCAGAAATGAAACCATTGGTGGTTACATCTTCGTCTGCAACAATGATACCATGCAAGAGAATCTCAAGAGGCAGCTTTTTGGTTTGCCTCCACGTTACCGTGACTCAGTTCGGGCCATTACTCCAGGGTTGCCCCTTTTCCTTTACAACTACTCCACTCACCAACTCCATGGAATTTTTGAGGCTGCAAGCTTTGGAGGAACCAACTTTGATCCATCTGCTTGGGAAGACAAGAAATGCCCTGGTGAATCGCGCTTCCCTGCTCAGGTGAAAGTTCTAACTAGGAAAGTCTGTGAACCACTGGAAGAGGATTCCTTCAGGCCAATTCTTCATCACTACGATGGCCCTAAATTCCGTCTTGAACTCAGCGTGCCAGAGGCCCTCTCTCTGTTGGATATATTTGCAGACCAGGATGATATATTTGTGACTGAAACCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003848 GO:0004156 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016772 GO:0016778 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046653 GO:0046654 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 map00790 map01100

Pfam Domains

Protein Families

HPPK Pterin_bind

Protein Analysis

393

Amino Acids

44.2

Weight (kDa)

7.65

Isoelectric Point (pI)

28.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dev_Cell_Death	PF10539	254 - 381	1e-39	Development and cell death domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30000 AT4G30000
fragaria_vesca	FvH4_4g10620
malus_domestica	MD06G1024100.v1.1 MD16G1281400.v1.1
prunus_persica	Prupe.1G566200_v2.0.a1 Prupe.1G566200_v2.0.a1
pyrus_communis	pycom1546g00020 pycom15g25320 pycom16g22310
rosa_chinensis	RchiOBHm_Chr2g0139531 RchiOBHm_Chr2g0139541 RchiOBHm_Chr7g0212391
rosa_laevigata	RLG00000002893
rosa_multiflora	Rmu_sc0038441.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246870
rosa_rugosa	Rorug07G0133500 Rorug07G0133600 Rorug07G0133700
rosa_samantha	Rh2BG418400 Rh2DG427200 Rh7AG266500 Rh7BG260600 Rh7CG283400 Rh7DG273500
rosa_wichuraiana	Rw7G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AatII	GACGTC	1 cut(s)	696
AccII	CGCG	1 cut(s)	994
AccIII	TCCGGA	1 cut(s)	460
AciI	CCGC	1 cut(s)	159
AclWI	GGATC	1 cut(s)	947
AcsI	RAATTY	5 cut(s)	169, 284, 710, 915, 1091
AcuI	CTGAAG	5 cut(s)	294, 324, 421, 608, 1042
AcyI	GRCGYC	1 cut(s)	693
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	5 cut(s)	195, 250, 251, 610, 1006
AjnI	CCWGG	4 cut(s)	603, 865, 982, 1149
AluBI	AGCT	8 cut(s)	46, 105, 264, 308, 338, 635, 817, 933
AluI	AGCT	8 cut(s)	46, 105, 264, 308, 338, 635, 817, 933
Alw26I	GTCTC	1 cut(s)	741
AlwI	GGATC	1 cut(s)	947
Ama87I	CYCGRG	1 cut(s)	494
Aor13HI	TCCGGA	1 cut(s)	460
AoxI	GGCC	5 cut(s)	122, 855, 1061, 1084, 1119
ApeKI	GCWGC	4 cut(s)	102, 114, 814, 926
ApoI	RAATTY	5 cut(s)	169, 284, 710, 915, 1091
AseI	ATTAAT	1 cut(s)	180
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	996
AspS9I	GGNCC	5 cut(s)	237, 427, 855, 1085, 1120
AsuC2I	CCSGG	2 cut(s)	401, 431
AsuHPI	GGTGA	8 cut(s)	173, 178, 620, 686, 713, 893, 998, 1021
AvaI	CYCGRG	1 cut(s)	494
AvaII	GGWCC	2 cut(s)	237, 427
BbsI	GAAGAC	2 cut(s)	492, 975
BbvI	GCAGC	4 cut(s)	114, 126, 826, 913
BccI	CCATC	2 cut(s)	964, 1076
BceAI	ACGGC	2 cut(s)	127, 577
BciT130I	CCWGG	4 cut(s)	605, 867, 984, 1151
BcnI	CCSGG	2 cut(s)	401, 431
BcoDI	GTCTC	1 cut(s)	741
BfaI	CTAG	1 cut(s)	1023
BisI	GCNGC	4 cut(s)	103, 115, 815, 927
BlsI	GCNGC	4 cut(s)	104, 116, 816, 928
Bme1390I	CCNGG	6 cut(s)	401, 431, 605, 867, 984, 1151
Bme18I	GGWCC	2 cut(s)	237, 427
BmeT110I	CYCGRG	1 cut(s)	494
BmgT120I	GGNCC	5 cut(s)	237, 427, 855, 1085, 1120
BmiI	GGNNCC	4 cut(s)	238, 429, 459, 943
BmrFI	CCNGG	6 cut(s)	401, 431, 605, 867, 984, 1151
BmsI	GCATC	2 cut(s)	118, 525
BpiI	GAAGAC	2 cut(s)	492, 975
BplI	GAGNNNNNCTC	2 cut(s)	1109, 1141
BpmI	CTGGAG	2 cut(s)	118, 849
Bpu10I	CCTNAGC	1 cut(s)	1005
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	2 cut(s)	401, 431
BsaHI	GRCGYC	1 cut(s)	693
BsaJI	CCNNGG	6 cut(s)	273, 409, 604, 866, 910, 982
BsaWI	WCCGGW	1 cut(s)	460
BsaXI	ACNNNNNCTCC	2 cut(s)	878, 908
Bsc4I	CCNNNNNNNGG	5 cut(s)	195, 250, 251, 610, 1006
Bse1I	ACTGG	1 cut(s)	1047
BseAI	TCCGGA	1 cut(s)	460
BseBI	CCWGG	4 cut(s)	605, 867, 984, 1151
BseDI	CCNNGG	6 cut(s)	273, 409, 604, 866, 910, 982
BseGI	GGATG	2 cut(s)	59, 1159
BseLI	CCNNNNNNNGG	5 cut(s)	195, 250, 251, 610, 1006
BseMII	CTCAG	4 cut(s)	723, 861, 1019, 1120
BseNI	ACTGG	1 cut(s)	1047
BseRI	GAGGAG	2 cut(s)	148, 626
BseXI	GCAGC	4 cut(s)	114, 126, 826, 913
BseYI	CCCAGC	1 cut(s)	635
Bsh1236I	CGCG	1 cut(s)	994
BshFI	GGCC	5 cut(s)	124, 857, 1063, 1086, 1121
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	3 cut(s)	401, 431, 461
BslFI	GGGAC	2 cut(s)	383, 413
BslI	CCNNNNNNNGG	5 cut(s)	195, 250, 251, 610, 1006
BsmAI	GTCTC	1 cut(s)	741
BsmFI	GGGAC	2 cut(s)	383, 413
BsnI	GGCC	5 cut(s)	124, 857, 1063, 1086, 1121
BsoBI	CYCGRG	1 cut(s)	494
Bsp13I	TCCGGA	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	93, 619, 952
Bsp19I	CCATGG	2 cut(s)	409, 910
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	5 cut(s)	124, 857, 1063, 1086, 1121
BspCNI	CTCAG	4 cut(s)	724, 860, 1018, 1119
BspEI	TCCGGA	1 cut(s)	460
BspFNI	CGCG	1 cut(s)	994
BspLI	GGNNCC	4 cut(s)	238, 429, 459, 943
BspPI	GGATC	1 cut(s)	947
BsrI	ACTGG	1 cut(s)	1047
BssECI	CCNNGG	6 cut(s)	273, 409, 604, 866, 910, 982
BssMI	GATC	3 cut(s)	93, 619, 952
BssNI	GRCGYC	1 cut(s)	693
BssT1I	CCWWGG	3 cut(s)	273, 409, 910
Bst2UI	CCWGG	4 cut(s)	605, 867, 984, 1151
Bst4CI	ACNGT	2 cut(s)	729, 842
Bst6I	CTCTTC	1 cut(s)	1041
BstACI	GRCGYC	1 cut(s)	693
BstC8I	GCNNGC	3 cut(s)	555, 931, 1112
BstDEI	CTNAG	4 cut(s)	732, 847, 1005, 1106
BstDSI	CCRYGG	2 cut(s)	409, 910
BstF5I	GGATG	2 cut(s)	59, 1159
BstFNI	CGCG	1 cut(s)	994
BstHHI	GCGC	1 cut(s)	996
BstKTI	GATC	3 cut(s)	96, 622, 955
BstMAI	GTCTC	1 cut(s)	741
BstMBI	GATC	3 cut(s)	93, 619, 952
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 261
BstNI	CCWGG	4 cut(s)	605, 867, 984, 1151
BstSCI	CCNGG	6 cut(s)	399, 429, 603, 865, 982, 1149
BstUI	CGCG	1 cut(s)	994
BstV1I	GCAGC	4 cut(s)	114, 126, 826, 913
BstV2I	GAAGAC	2 cut(s)	492, 975
BstXI	CCANNNNNNTGG	2 cut(s)	911, 963
BsuRI	GGCC	5 cut(s)	124, 857, 1063, 1086, 1121
BtgI	CCRYGG	2 cut(s)	409, 910
BtsCI	GGATG	2 cut(s)	59, 1159
BtsIMutI	CAGTG	2 cut(s)	445, 1040
Cac8I	GCNNGC	3 cut(s)	555, 931, 1112
CfoI	GCGC	1 cut(s)	996
Cfr13I	GGNCC	5 cut(s)	237, 427, 855, 1085, 1120
Csp6I	GTAC	1 cut(s)	595
CviAII	CATG	3 cut(s)	410, 793, 911
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	4 cut(s)	732, 847, 1005, 1106
DpnI	GATC	3 cut(s)	95, 621, 954
DpnII	GATC	3 cut(s)	93, 619, 952
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	1041
EarI	CTCTTC	1 cut(s)	1041
Eco130I	CCWWGG	3 cut(s)	273, 409, 910
Eco147I	AGGCCT	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	237, 427
Eco57I	CTGAAG	5 cut(s)	294, 324, 421, 608, 1042
Eco88I	CYCGRG	1 cut(s)	494
EcoO109I	RGGNCCY	2 cut(s)	427, 1120
EcoRI	GAATTC	2 cut(s)	169, 284
EcoRII	CCWGG	4 cut(s)	603, 865, 982, 1149
EcoT14I	CCWWGG	3 cut(s)	273, 409, 910
ErhI	CCWWGG	3 cut(s)	273, 409, 910
FaeI	CATG	3 cut(s)	413, 796, 914
FaiI	YATR	6 cut(s)	109, 411, 794, 912, 1139, 1160
FaqI	GGGAC	2 cut(s)	383, 413
FatI	CATG	3 cut(s)	409, 792, 910
Fnu4HI	GCNGC	4 cut(s)	103, 115, 815, 927
FokI	GGATG	2 cut(s)	46, 1166
Fsp4HI	GCNGC	4 cut(s)	103, 115, 815, 927
FspBI	CTAG	1 cut(s)	1023
GlaI	GCGC	1 cut(s)	995
GluI	GCNGC	4 cut(s)	103, 115, 815, 927
GsaI	CCCAGC	1 cut(s)	639
GsuI	CTGGAG	2 cut(s)	118, 849
HaeIII	GGCC	5 cut(s)	124, 857, 1063, 1086, 1121
HapII	CCGG	3 cut(s)	401, 431, 461
HhaI	GCGC	1 cut(s)	996
Hin1I	GRCGYC	1 cut(s)	693
Hin1II	CATG	3 cut(s)	413, 796, 914
Hin6I	GCGC	1 cut(s)	994
HinP1I	GCGC	1 cut(s)	994
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	3 cut(s)	306, 336, 931
HinfI	GANTC	6 cut(s)	89, 734, 802, 845, 989, 1052
HpaII	CCGG	3 cut(s)	401, 431, 461
HphI	GGTGA	8 cut(s)	173, 178, 620, 686, 713, 893, 998, 1021
Hpy166II	GTNNAC	2 cut(s)	85, 1037
Hpy188I	TCNGA	8 cut(s)	202, 241, 283, 313, 343, 373, 423, 733
Hpy188III	TCNNGA	6 cut(s)	55, 97, 461, 715, 808, 1100
Hpy8I	GTNNAC	2 cut(s)	85, 1037
HpyAV	CCTTC	5 cut(s)	34, 206, 418, 448, 1066
HpyCH4III	ACNGT	2 cut(s)	729, 842
HpyCH4IV	ACGT	2 cut(s)	693, 835
HpyCH4V	TGCA	5 cut(s)	557, 780, 796, 929, 1145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 261
HpyF3I	CTNAG	4 cut(s)	732, 847, 1005, 1106
HpySE526I	ACGT	2 cut(s)	693, 835
Hsp92I	GRCGYC	1 cut(s)	693
Hsp92II	CATG	3 cut(s)	413, 796, 914
HspAI	GCGC	1 cut(s)	994
Kpn2I	TCCGGA	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	93, 619, 952
LmnI	GCTCC	1 cut(s)	99
Lsp1109I	GCAGC	4 cut(s)	114, 126, 826, 913
LweI	GCATC	2 cut(s)	118, 525
MaeI	CTAG	1 cut(s)	1023
MaeII	ACGT	2 cut(s)	693, 835
MaeIII	GTNAC	5 cut(s)	701, 764, 836, 842, 1165
MalI	GATC	3 cut(s)	95, 621, 954
MboI	GATC	3 cut(s)	93, 619, 952
MboII	GAAGA	8 cut(s)	492, 652, 655, 676, 763, 980, 1058, 1061
MlyI	GAGTC	3 cut(s)	83, 743, 839
MmeI	TCCRAC	2 cut(s)	264, 1113
MroI	TCCGGA	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	9 cut(s)	180, 300, 378, 387, 417, 468, 477, 576, 630
MslI	CAYNNNNRTG	1 cut(s)	1080
MspI	CCGG	3 cut(s)	401, 431, 461
MspR9I	CCNGG	6 cut(s)	401, 431, 605, 867, 984, 1151
MvaI	CCWGG	4 cut(s)	605, 867, 984, 1151
MvnI	CGCG	1 cut(s)	994
MwoI	GCNNNNNNNGC	2 cut(s)	111, 261
NciI	CCSGG	2 cut(s)	401, 431
NcoI	CCATGG	2 cut(s)	409, 910
NdeII	GATC	3 cut(s)	93, 619, 952
NlaIII	CATG	3 cut(s)	413, 796, 914
NlaIV	GGNNCC	4 cut(s)	238, 429, 459, 943
NmuCI	GTSAC	3 cut(s)	701, 842, 1165
PceI	AGGCCT	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	802, 989, 1052
PfoI	TCCNGGA	2 cut(s)	399, 429
PkrI	GCNGC	4 cut(s)	104, 116, 816, 928
PleI	GAGTC	3 cut(s)	83, 742, 839
PpsI	GAGTC	3 cut(s)	83, 742, 839
PpuMI	RGGWCCY	1 cut(s)	427
PshBI	ATTAAT	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	4 cut(s)	603, 865, 982, 1149
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	4 cut(s)	603, 865, 982, 1149
PspN4I	GGNNCC	4 cut(s)	238, 429, 459, 943
PspPI	GGNCC	5 cut(s)	237, 427, 855, 1085, 1120
PspPPI	RGGWCCY	1 cut(s)	427
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
RseI	CAYNNNNRTG	1 cut(s)	1080
SaqAI	TTAA	9 cut(s)	180, 300, 378, 387, 417, 468, 477, 576, 630
SatI	GCNGC	4 cut(s)	103, 115, 815, 927
Sau3AI	GATC	3 cut(s)	93, 619, 952
Sau96I	GGNCC	5 cut(s)	237, 427, 855, 1085, 1120
SchI	GAGTC	3 cut(s)	83, 743, 839
ScrFI	CCNGG	6 cut(s)	401, 431, 605, 867, 984, 1151
SfaNI	GCATC	2 cut(s)	118, 525
SinI	GGWCC	2 cut(s)	237, 427
SmiMI	CAYNNNNRTG	1 cut(s)	1080
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	1 cut(s)	159
SspMI	CTAG	1 cut(s)	1023
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	6 cut(s)	399, 429, 603, 865, 982, 1149
StyI	CCWWGG	3 cut(s)	273, 409, 910
TaaI	ACNGT	2 cut(s)	729, 842
TaiI	ACGT	2 cut(s)	696, 838
TaqI	TCGA	3 cut(s)	92, 144, 618
TfiI	GAWTC	3 cut(s)	802, 989, 1052
Tru1I	TTAA	9 cut(s)	180, 300, 378, 387, 417, 468, 477, 576, 630
Tru9I	TTAA	9 cut(s)	180, 300, 378, 387, 417, 468, 477, 576, 630
TscAI	CASTG	2 cut(s)	445, 1047
TseFI	GTSAC	3 cut(s)	701, 842, 1165
TseI	GCWGC	4 cut(s)	102, 114, 814, 926
Tsp45I	GTSAC	3 cut(s)	701, 842, 1165
TspDTI	ATGAA	3 cut(s)	225, 765, 1061
TspGWI	ACGGA	2 cut(s)	70, 1085
TspRI	CASTG	2 cut(s)	445, 1047
VpaK11BI	GGWCC	2 cut(s)	237, 427
VspI	ATTAAT	1 cut(s)	180
XapI	RAATTY	5 cut(s)	169, 284, 710, 915, 1091
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	1023
ZraI	GACGTC	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.