Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006764

Physical Location & Seq

Genomic Coordinates Reverse (-)

19728147 .. 19729496

Gene Structure 1350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGAGAAAATCAGGCATACACATCACAAGACATGCTTGCTTGTATGAGACAGCACCAGCCTATGTGACTGATCAGCCTAATTTTCTCAACTCTGCTGTTAGAGCTGTTACACAACTTGGGCCTCATGAGTTGTTAGGAGCACTGAAGAAAATTGAAAAGGACATGGGTCGTACTGATGGTATTAGGTATGGTCCCAGGCCAATCGACCTGGATATATTGTTCTATGGAAAGCAAAGAATCAGTTCTGAGATTCTTATGGTCCCCCATGAAAGAATTTGGGAAAGACCATTTGTAATGGCCCCACTAATGGATTTGCTGGGTTCAAGTATTGACAGCGATACAGTTTCTTGTTGGCATTCTTTCTCAAACCATTCTGATGGGCTTTTTGATTCTTGGGAGAAATTGGGCGGTGAACCACTTATTGGAAAGGAAGGACTGAAGAGGGTTTTGCCTATTGGAAATGGCTTTTGGAACTGGTCAACAAGAACCTCGGTAATGGGTATCCTTAATTTGACCCCAGATAGTTTCAGTGATGGAGGAAAGTTTCAGTCTGTGGAGGCAGCAATTTCTCAGGTCCGTTCAATGATTTCAGAGGGGGCAGATATGATTGATATTGGCGCACAGTCTACACGGCCAATGGCTTCTAGGATTTCAGTTCAACAAGAACTGGATAGACTAATTCCTGTCTTAGAAGCAGTTCTTGGGCTGCCTGAAGCAGAGGGAAAGATTGTATCTGTGGACACATTTTATTCAGAAGTTGCGGAAGAAGCAGTCAGTAAGGGTGCTCATATTGTAAATGATGTATCTGCCGGGCAGTTGGACTCCAACATGTTAAAAGTCGTTGCTGACCTTAAAGTTCCTTACATTGCAATGCACATGAGGGGAGATCCATCGACAATGCAGAACAGCGAGAACCTGCAATATGATAATGTTTGTAAGCAGGTTGTGTCTGAGTTATACTCAAAGGTGAGAGAAGCTGAAATATTAGGCATCCCAGTTTGGAGGATGATAATTGACCCTGGACTTGGATTTTCAAAGAACTGTGAACACAATTTGGAAATCTTGATGGGGTTACCAAATATTCAAGCAGAGATTGGGAGGAGAAGTTTGGCTTTGTCTCATGCGCCCATACTAATTGGACCTTCGAGAAAGAAATTTTTAGGTGAAGTTTGTAATCGCACTGCCGCAACTGAGAGAGATGCTGCTACTGTTGCTTCTGTCACTGCCGCAGTCCTGGGCGGAGCAAATATTGTAAGAGTACATAATGTAAGAGATAATGTAGATGCTGTAAAGCTATGTGATGCAATGCTGAGACAGAGGAGATCTATTCCTCCAAGTAATAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003848 GO:0004156 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016772 GO:0016778 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046653 GO:0046654 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 map00790 map01100

Pfam Domains

Protein Families

HPPK Pterin_bind

Protein Analysis

450

Amino Acids

49.34

Weight (kDa)

6.29

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HPPK	PF01288	7 - 105	1.7e-26	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
Pterin_bind	PF00809	166 - 421	4.6e-84	Pterin binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30000 AT4G30000
fragaria_vesca	FvH4_4g10620
malus_domestica	MD06G1024100.v1.1 MD16G1281400.v1.1
prunus_persica	Prupe.1G566200_v2.0.a1 Prupe.1G566200_v2.0.a1
pyrus_communis	pycom1546g00020 pycom15g25320 pycom16g22310
rosa_chinensis	RchiOBHm_Chr2g0139531 RchiOBHm_Chr2g0139541 RchiOBHm_Chr7g0212391
rosa_laevigata	RLG00000002893
rosa_multiflora	Rmu_sc0038441.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246870
rosa_rugosa	Rorug07G0133500 Rorug07G0133600 Rorug07G0133700
rosa_samantha	Rh2BG418400 Rh2DG427200 Rh7AG266500 Rh7BG260600 Rh7CG283400 Rh7DG273500
rosa_wichuraiana	Rw7G022790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	924, 931
AccB7I	CCANNNNNTGG	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	626
AciI	CCGC	5 cut(s)	408, 761, 1185, 1227, 1239
AclWI	GGATC	1 cut(s)	881
AcoI	YGGCCR	1 cut(s)	632
AcsI	RAATTY	2 cut(s)	273, 1154
AcuI	CTGAAG	3 cut(s)	164, 458, 732
AfaI	GTAC	2 cut(s)	172, 1260
AfiI	CCNNNNNNNGG	3 cut(s)	307, 422, 1025
AflIII	ACRYGT	1 cut(s)	828
AgsI	TTSAA	6 cut(s)	155, 324, 582, 659, 1035, 1085
AjnI	CCWGG	4 cut(s)	194, 207, 1018, 1233
AjuI	GAANNNNNNNTTGG	6 cut(s)	405, 437, 451, 483, 684, 716
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
AluBI	AGCT	3 cut(s)	104, 977, 1294
AluI	AGCT	3 cut(s)	104, 977, 1294
Alw21I	GWGCWC	2 cut(s)	142, 787
Alw26I	GTCTC	3 cut(s)	41, 1122, 1306
AlwI	GGATC	1 cut(s)	881
AoxI	GGCC	4 cut(s)	119, 197, 297, 632
ApeKI	GCWGC	3 cut(s)	560, 706, 1202
ApoI	RAATTY	2 cut(s)	273, 1154
Asp700I	GAANNNNTTC	2 cut(s)	241, 696
AspLEI	GCGC	2 cut(s)	620, 1126
AspS9I	GGNCC	6 cut(s)	119, 191, 259, 298, 574, 1139
AsuC2I	CCSGG	1 cut(s)	811
AsuHPI	GGTGA	3 cut(s)	422, 979, 1175
AvaII	GGWCC	4 cut(s)	191, 259, 574, 1139
Bbv12I	GWGCWC	2 cut(s)	142, 787
BbvI	GCAGC	3 cut(s)	572, 693, 1189
BccI	CCATC	5 cut(s)	170, 371, 527, 898, 1060
BceAI	ACGGC	1 cut(s)	647
BciT130I	CCWGG	4 cut(s)	196, 209, 1020, 1235
BciVI	GTATCC	1 cut(s)	512
BclI	TGATCA	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	811
BcoDI	GTCTC	3 cut(s)	41, 1122, 1306
BfaI	CTAG	1 cut(s)	645
BfuAI	ACCTGC	2 cut(s)	924, 931
BfuI	GTATCC	1 cut(s)	512
BglII	AGATCT	1 cut(s)	1322
BisI	GCNGC	5 cut(s)	561, 707, 1185, 1203, 1227
BlsI	GCNGC	5 cut(s)	562, 708, 1186, 1204, 1228
Bme1390I	CCNGG	5 cut(s)	196, 209, 811, 1020, 1235
Bme18I	GGWCC	4 cut(s)	191, 259, 574, 1139
BmgT120I	GGNCC	6 cut(s)	119, 191, 259, 298, 574, 1139
BmiI	GGNNCC	3 cut(s)	193, 261, 300
BmrFI	CCNGG	5 cut(s)	196, 209, 811, 1020, 1235
BmrI	ACTGGG	1 cut(s)	989
BmsI	GCATC	4 cut(s)	999, 1189, 1273, 1291
BmuI	ACTGGG	1 cut(s)	989
BoxI	GACNNNNGTC	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	944, 976
BpuMI	CCSGG	1 cut(s)	811
BsaJI	CCNNGG	4 cut(s)	194, 489, 1018, 1234
BsaXI	ACNNNNNCTCC	2 cut(s)	1090, 1120
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 422, 1025
Bse1I	ACTGG	3 cut(s)	479, 672, 995
Bse3DI	GCAATG	3 cut(s)	864, 876, 1311
BseBI	CCWGG	4 cut(s)	196, 209, 1020, 1235
BseDI	CCNNGG	4 cut(s)	194, 489, 1018, 1234
BseGI	GGATG	2 cut(s)	990, 1011
BseLI	CCNNNNNNNGG	3 cut(s)	307, 422, 1025
BseMI	GCAATG	3 cut(s)	864, 876, 1311
BseMII	CTCAG	5 cut(s)	237, 584, 942, 1182, 1301
BseNI	ACTGG	3 cut(s)	479, 672, 995
BseRI	GAGGAG	2 cut(s)	1114, 1333
BseXI	GCAGC	3 cut(s)	572, 693, 1189
BseYI	CCCAGC	1 cut(s)	316
BshFI	GGCC	4 cut(s)	121, 199, 299, 634
BsiHKAI	GWGCWC	2 cut(s)	142, 787
BsiSI	CCGG	1 cut(s)	810
BslFI	GGGAC	2 cut(s)	177, 245
BslI	CCNNNNNNNGG	3 cut(s)	307, 422, 1025
BsmAI	GTCTC	3 cut(s)	41, 1122, 1306
BsmFI	GGGAC	2 cut(s)	177, 245
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	4 cut(s)	121, 199, 299, 634
Bsp1286I	GDGCHC	2 cut(s)	142, 787
Bsp143I	GATC	3 cut(s)	70, 886, 1322
BspACI	CCGC	5 cut(s)	408, 761, 1185, 1227, 1239
BspANI	GGCC	4 cut(s)	121, 199, 299, 634
BspCNI	CTCAG	5 cut(s)	238, 583, 943, 1183, 1302
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	193, 261, 300
BspMI	ACCTGC	2 cut(s)	924, 931
BspPI	GGATC	1 cut(s)	881
BsrDI	GCAATG	3 cut(s)	864, 876, 1311
BsrI	ACTGG	3 cut(s)	479, 672, 995
BssECI	CCNNGG	4 cut(s)	194, 489, 1018, 1234
BssMI	GATC	3 cut(s)	70, 886, 1322
Bst2UI	CCWGG	4 cut(s)	196, 209, 1020, 1235
Bst4CI	ACNGT	4 cut(s)	343, 624, 1043, 1210
Bst6I	CTCTTC	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	6 cut(s)	246, 570, 688, 951, 1191, 1310
BstEII	GGTNACC	1 cut(s)	1071
BstF5I	GGATG	2 cut(s)	990, 1011
BstHHI	GCGC	2 cut(s)	620, 1126
BstKTI	GATC	3 cut(s)	73, 889, 1325
BstMAI	GTCTC	3 cut(s)	41, 1122, 1306
BstMBI	GATC	3 cut(s)	70, 886, 1322
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 767, 1211
BstNI	CCWGG	4 cut(s)	196, 209, 1020, 1235
BstNSI	RCATGY	2 cut(s)	35, 832
BstPAI	GACNNNNGTC	1 cut(s)	165
BstPI	GGTNACC	1 cut(s)	1071
BstSCI	CCNGG	5 cut(s)	194, 207, 809, 1018, 1233
BstV1I	GCAGC	3 cut(s)	572, 693, 1189
BstX2I	RGATCY	2 cut(s)	886, 1322
BstXI	CCANNNNNNTGG	1 cut(s)	377
BstYI	RGATCY	2 cut(s)	886, 1322
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	4 cut(s)	121, 199, 299, 634
BtsCI	GGATG	2 cut(s)	990, 1011
BtsI	GCAGTG	2 cut(s)	1179, 1221
BtsIMutI	CAGTG	4 cut(s)	140, 535, 1179, 1221
BveI	ACCTGC	2 cut(s)	924, 931
Cac8I	GCNNGC	1 cut(s)	37
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	2 cut(s)	620, 1126
Cfr13I	GGNCC	6 cut(s)	119, 191, 259, 298, 574, 1139
Csp6I	GTAC	2 cut(s)	171, 1259
CviAII	CATG	7 cut(s)	32, 125, 163, 266, 829, 877, 1121
CviQI	GTAC	2 cut(s)	171, 1259
DdeI	CTNAG	6 cut(s)	246, 570, 688, 951, 1191, 1310
DpnI	GATC	3 cut(s)	72, 888, 1324
DpnII	GATC	3 cut(s)	70, 886, 1322
EaeI	YGGCCR	1 cut(s)	632
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
EciI	GGCGGA	1 cut(s)	1254
Eco47I	GGWCC	4 cut(s)	191, 259, 574, 1139
Eco57I	CTGAAG	3 cut(s)	164, 458, 732
Eco91I	GGTNACC	1 cut(s)	1071
EcoO65I	GGTNACC	1 cut(s)	1071
EcoRII	CCWGG	4 cut(s)	194, 207, 1018, 1233
FaeI	CATG	7 cut(s)	35, 128, 166, 269, 832, 880, 1124
FalI	AAGNNNNNCTT	6 cut(s)	19, 51, 684, 716, 1096, 1128
FaqI	GGGAC	2 cut(s)	177, 245
FatI	CATG	7 cut(s)	31, 124, 162, 265, 828, 876, 1120
FbaI	TGATCA	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	626
Fnu4HI	GCNGC	5 cut(s)	561, 707, 1185, 1203, 1227
FokI	GGATG	2 cut(s)	977, 1018
Fsp4HI	GCNGC	5 cut(s)	561, 707, 1185, 1203, 1227
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	2 cut(s)	619, 1125
GluI	GCNGC	5 cut(s)	561, 707, 1185, 1203, 1227
GsaI	CCCAGC	1 cut(s)	320
HaeIII	GGCC	4 cut(s)	121, 199, 299, 634
HapII	CCGG	1 cut(s)	810
HhaI	GCGC	2 cut(s)	620, 1126
Hin1II	CATG	7 cut(s)	35, 128, 166, 269, 832, 880, 1124
Hin6I	GCGC	2 cut(s)	618, 1124
HinP1I	GCGC	2 cut(s)	618, 1124
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	4 cut(s)	237, 250, 389, 821
HpaII	CCGG	1 cut(s)	810
HphI	GGTGA	3 cut(s)	422, 979, 1175
Hpy166II	GTNNAC	5 cut(s)	413, 480, 627, 739, 1046
Hpy188I	TCNGA	5 cut(s)	247, 376, 592, 754, 952
Hpy188III	TCNNGA	3 cut(s)	125, 1063, 1146
Hpy8I	GTNNAC	5 cut(s)	413, 480, 627, 739, 1046
HpyAV	CCTTC	2 cut(s)	425, 1152
HpyCH4III	ACNGT	4 cut(s)	343, 624, 1043, 1210
HpyCH4V	TGCA	5 cut(s)	869, 874, 901, 919, 1304
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 767, 1211
HpyF3I	CTNAG	6 cut(s)	246, 570, 688, 951, 1191, 1310
Hsp92II	CATG	7 cut(s)	35, 128, 166, 269, 832, 880, 1124
HspAI	GCGC	2 cut(s)	618, 1124
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	70, 886, 1322
LmnI	GCTCC	2 cut(s)	137, 1241
Lsp1109I	GCAGC	3 cut(s)	572, 693, 1189
LweI	GCATC	4 cut(s)	999, 1189, 1273, 1291
MaeI	CTAG	1 cut(s)	645
MaeIII	GTNAC	4 cut(s)	64, 106, 1071, 1219
MalI	GATC	3 cut(s)	72, 888, 1324
MboI	GATC	3 cut(s)	70, 886, 1322
MboII	GAAGA	3 cut(s)	157, 451, 776
MflI	RGATCY	2 cut(s)	886, 1322
MhlI	GDGCHC	2 cut(s)	142, 787
MlyI	GAGTC	1 cut(s)	815
MmeI	TCCRAC	2 cut(s)	798, 849
MroXI	GAANNNNTTC	2 cut(s)	241, 696
MseI	TTAA	3 cut(s)	507, 833, 852
MslI	CAYNNNNRTG	2 cut(s)	375, 869
MspI	CCGG	1 cut(s)	810
MspR9I	CCNGG	5 cut(s)	196, 209, 811, 1020, 1235
Mva1269I	GAATGC	1 cut(s)	355
MvaI	CCWGG	4 cut(s)	196, 209, 1020, 1235
MwoI	GCNNNNNNNGC	3 cut(s)	101, 767, 1211
NciI	CCSGG	1 cut(s)	811
NdeII	GATC	3 cut(s)	70, 886, 1322
NlaIII	CATG	7 cut(s)	35, 128, 166, 269, 832, 880, 1124
NlaIV	GGNNCC	3 cut(s)	193, 261, 300
NmuCI	GTSAC	2 cut(s)	64, 1219
NspI	RCATGY	2 cut(s)	35, 832
PagI	TCATGA	1 cut(s)	124
PciI	ACATGT	1 cut(s)	828
PctI	GAATGC	1 cut(s)	355
PdmI	GAANNNNTTC	2 cut(s)	241, 696
PfeI	GAWTC	3 cut(s)	237, 250, 389
PflMI	CCANNNNNTGG	1 cut(s)	422
PkrI	GCNGC	5 cut(s)	562, 708, 1186, 1204, 1228
PleI	GAGTC	1 cut(s)	815
PpsI	GAGTC	1 cut(s)	815
PscI	ACATGT	1 cut(s)	828
PshAI	GACNNNNGTC	1 cut(s)	165
Psp6I	CCWGG	4 cut(s)	194, 207, 1018, 1233
PspEI	GGTNACC	1 cut(s)	1071
PspFI	CCCAGC	1 cut(s)	316
PspGI	CCWGG	4 cut(s)	194, 207, 1018, 1233
PspN4I	GGNNCC	3 cut(s)	193, 261, 300
PspPI	GGNCC	6 cut(s)	119, 191, 259, 298, 574, 1139
PsuI	RGATCY	2 cut(s)	886, 1322
RsaI	GTAC	2 cut(s)	172, 1260
RsaNI	GTAC	2 cut(s)	171, 1259
RseI	CAYNNNNRTG	2 cut(s)	375, 869
SaqAI	TTAA	3 cut(s)	507, 833, 852
SatI	GCNGC	5 cut(s)	561, 707, 1185, 1203, 1227
Sau3AI	GATC	3 cut(s)	70, 886, 1322
Sau96I	GGNCC	6 cut(s)	119, 191, 259, 298, 574, 1139
SchI	GAGTC	1 cut(s)	815
ScrFI	CCNGG	5 cut(s)	196, 209, 811, 1020, 1235
SduI	GDGCHC	2 cut(s)	142, 787
SfaNI	GCATC	4 cut(s)	999, 1189, 1273, 1291
SinI	GGWCC	4 cut(s)	191, 259, 574, 1139
SmiMI	CAYNNNNRTG	2 cut(s)	375, 869
SsiI	CCGC	5 cut(s)	408, 761, 1185, 1227, 1239
SspI	AATATT	3 cut(s)	984, 1081, 1249
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	5 cut(s)	194, 207, 809, 1018, 1233
TaaI	ACNGT	4 cut(s)	343, 624, 1043, 1210
TaqI	TCGA	3 cut(s)	204, 893, 1145
TatI	WGTACW	1 cut(s)	1258
TauI	GCSGC	2 cut(s)	1187, 1229
TfiI	GAWTC	3 cut(s)	237, 250, 389
Tru1I	TTAA	3 cut(s)	507, 833, 852
Tru9I	TTAA	3 cut(s)	507, 833, 852
TscAI	CASTG	4 cut(s)	147, 535, 1186, 1228
TseFI	GTSAC	2 cut(s)	64, 1219
TseI	GCWGC	3 cut(s)	560, 706, 1202
Tsp45I	GTSAC	2 cut(s)	64, 1219
TspDTI	ATGAA	1 cut(s)	282
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	4 cut(s)	147, 535, 1186, 1228
Van91I	CCANNNNNTGG	1 cut(s)	422
VpaK11BI	GGWCC	4 cut(s)	191, 259, 574, 1139
XapI	RAATTY	2 cut(s)	273, 1154
XceI	RCATGY	2 cut(s)	35, 832
XmiI	GTMKAC	1 cut(s)	626
XmnI	GAANNNNTTC	2 cut(s)	241, 696
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.