MD16G1281400.v1.1

Folic acid synthesis protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
38369986 .. 38372790
2805 bp
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UTR
Exon/CDS
Intron
MD16G1281400.v1.1.491

Sequence Viewer

Length: 1509 bp
ATGCTTGTTTACACTTTCAATGCAGCATCGTGTTCTTCTTTCATACATTCATCCCCAAACTTCTCAGCACAAGTTCATTCTCCGGACCAGGAGGTAGTGATTGCTTTGGGAAGCAATGTGGGTGACAGACTGCATAATTTCAATGAAGCCTTGCAGTTAATGAGAAAATCGGGCATACACATCACAAGACATGCTTGCTTGTATGAGACAGCGCCAGCCTATGTGACTGATCAGCCTAATTTTCTCAACTCTGCTGTTAGAGCTGTTACACAACTTGGGCCTCATGAGTTATTAGGAGCACTGAAGAAAATTGAAAAGGACATGGGTCGTACTGATGGTATTAGGTATGGTCCCAGGCCAATCGACCTGGATATATTGTTCTATGGAAAGCAAAGAATCAGTTCTGAGATTCTTGTGGTCCCCCATGAAAGAATTTGGGAAAGACCATTTGTAATGGCCCCACTAATGGATTTGCTGGGTTCAAGTATTGACAGCGATACAGTTTCTTGTTGGCATTCTTTCTCAAACCATTCTGATGGGCTTTTTGATTCTTGGGAGAAATTGGGCGGTGAACCACTCATTGGAAAGGAAGGACTGAAGAGGGTTTTGCCTATTGGAAACGGCTTTTGGGACTGGTCAACGAAAACCTCGGTAATGGGTATCCTTAATTTGACCCCAGATAGTTTTAGTGATGGAGGAAAGTTTCAGTCTGTGGAGGCAGCAATTTCTCAGGTCCGTTCAATGATTTCAGAGGGGGCAGATATGATTGATATTGGCGCACAGTCTACACGGCCAATGGCTTCTAGGATTTCAGTTCAACAAGAACTGGATAGACTAATTCCTGTCTTAGAAGCAGTTCTTGGGCTGCCTGAAGCAGAGGGAAAGATTGTATCTGTGGACACATTTTATTCAGAAGTTGCGGAAGAAGCAGTCAGTAAGGGTGCTCATATTGTAAATGATGTATCTGCCGGGCAGTTGGACTCTAACATGTTAAAAGTCGTTGCTGACCTCAAAGTTCCTTACATTGCAATGCACATGAGGGGAGATCCATCGACAATGCAGAACAGTGAGAACCTGCAATATGATAATGTTTGTAAGCAGGTTGTGTCTGAGTTATACTCGAAGGTGAGAGAAGCTGAAATATTAGGCATCCCCGCTTGGAGGATGATAATTGACCCTGGACTTGGATTTTCAAAGAACCGTGAACACAATTTGGAAATCTTAATGGGGTTACCAAATATTCAAGCAGAGATTGGGAGGAAAAGTTTGGCTTTGTCTCATGCGCCCATACTAATTGGACCTTCGAGAAAGAAATTTTTAGGTGAAGTTTGTAATCGCACTGCTGCAACTGAAAGAGATGCTGCTACTGTTGCTTCTGTCACTGCCGCAGTCCTGGGCGGAGCAAATATTGTAAGAGTACATAATGTAAGAGATAATGTAGATGCTGTAAAGCTATGTGATGCAATGCTGAGACAGAGGAGATCTATTCCTCCAAGTTATAAAAAATGA

Protein Analysis

503

Amino Acids

55.07

Weight (kDa)

6.08

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HPPK PF01288 33 - 158 5.8e-35 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
Pterin_bind PF00809 219 - 474 6.6e-85 Pterin binding enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1500
Acc36I ACCTGC 2 cut(s) 1083, 1090
AccB7I CCANNNNNTGG 1 cut(s) 581
AccI GTMKAC 1 cut(s) 785
AccIII TCCGGA 1 cut(s) 82
AciI CCGC 5 cut(s) 567, 920, 1155, 1386, 1398
AclWI GGATC 1 cut(s) 1040
AcoI YGGCCR 1 cut(s) 791
AcsI RAATTY 2 cut(s) 432, 1313
AcuI CTGAAG 3 cut(s) 323, 617, 891
AfaI GTAC 2 cut(s) 331, 1419
AfiI CCNNNNNNNGG 4 cut(s) 466, 581, 1161, 1184
AflIII ACRYGT 1 cut(s) 987
AgsI TTSAA 8 cut(s) 19, 142, 314, 483, 741, 818, 1194, 1244
AjnI CCWGG 5 cut(s) 87, 353, 366, 1177, 1392
AjuI GAANNNNNNNTTGG 6 cut(s) 564, 596, 610, 642, 843, 875
AloI GAACNNNNNNTCC 2 cut(s) 362, 394
AluBI AGCT 3 cut(s) 263, 1136, 1453
AluI AGCT 3 cut(s) 263, 1136, 1453
Alw21I GWGCWC 2 cut(s) 301, 946
Alw26I GTCTC 3 cut(s) 200, 1281, 1465
AlwI GGATC 1 cut(s) 1040
Aor13HI TCCGGA 1 cut(s) 82
AoxI GGCC 4 cut(s) 278, 356, 456, 791
ApeKI GCWGC 5 cut(s) 23, 719, 865, 1343, 1361
ApoI RAATTY 2 cut(s) 432, 1313
Asp700I GAANNNNTTC 2 cut(s) 400, 855
AspLEI GCGC 3 cut(s) 214, 779, 1285
AspS9I GGNCC 7 cut(s) 85, 278, 350, 418, 457, 733, 1298
AsuC2I CCSGG 1 cut(s) 970
AsuHPI GGTGA 4 cut(s) 134, 581, 1138, 1334
AvaII GGWCC 5 cut(s) 85, 350, 418, 733, 1298
Bbv12I GWGCWC 2 cut(s) 301, 946
BbvI GCAGC 5 cut(s) 35, 731, 852, 1330, 1348
BccI CCATC 4 cut(s) 329, 530, 686, 1057
BceAI ACGGC 2 cut(s) 637, 806
BciT130I CCWGG 5 cut(s) 89, 355, 368, 1179, 1394
BciVI GTATCC 1 cut(s) 671
BclI TGATCA 1 cut(s) 229
BcnI CCSGG 1 cut(s) 970
BcoDI GTCTC 3 cut(s) 200, 1281, 1465
BfaI CTAG 1 cut(s) 804
BfoI RGCGCY 1 cut(s) 215
BfuAI ACCTGC 2 cut(s) 1083, 1090
BfuI GTATCC 1 cut(s) 671
BglII AGATCT 1 cut(s) 1481
BisI GCNGC 6 cut(s) 24, 720, 866, 1344, 1362, 1386
BlsI GCNGC 6 cut(s) 25, 721, 867, 1345, 1363, 1387
Bme1390I CCNGG 6 cut(s) 89, 355, 368, 970, 1179, 1394
Bme18I GGWCC 5 cut(s) 85, 350, 418, 733, 1298
BmgT120I GGNCC 7 cut(s) 85, 278, 350, 418, 457, 733, 1298
BmiI GGNNCC 3 cut(s) 352, 420, 459
BmrFI CCNGG 6 cut(s) 89, 355, 368, 970, 1179, 1394
BmsI GCATC 5 cut(s) 35, 1158, 1348, 1432, 1450
BoxI GACNNNNGTC 1 cut(s) 324
BplI GAGNNNNNCTC 2 cut(s) 1103, 1135
BpuMI CCSGG 1 cut(s) 970
BsaJI CCNNGG 4 cut(s) 353, 648, 1177, 1393
BsaWI WCCGGW 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 1249, 1279
Bsc4I CCNNNNNNNGG 4 cut(s) 466, 581, 1161, 1184
Bse1I ACTGG 2 cut(s) 638, 831
Bse3DI GCAATG 4 cut(s) 121, 1023, 1035, 1470
BseAI TCCGGA 1 cut(s) 82
BseBI CCWGG 5 cut(s) 89, 355, 368, 1179, 1394
BseDI CCNNGG 4 cut(s) 353, 648, 1177, 1393
BseGI GGATG 3 cut(s) 50, 1149, 1170
BseLI CCNNNNNNNGG 4 cut(s) 466, 581, 1161, 1184
BseMI GCAATG 4 cut(s) 121, 1023, 1035, 1470
BseMII CTCAG 5 cut(s) 78, 396, 743, 1101, 1460
BseNI ACTGG 2 cut(s) 638, 831
BseRI GAGGAG 1 cut(s) 1492
BseXI GCAGC 5 cut(s) 35, 731, 852, 1330, 1348
BseYI CCCAGC 1 cut(s) 475
BshFI GGCC 4 cut(s) 280, 358, 458, 793
BsiHKAI GWGCWC 2 cut(s) 301, 946
BsiSI CCGG 2 cut(s) 83, 969
BslFI GGGAC 3 cut(s) 336, 404, 644
BslI CCNNNNNNNGG 4 cut(s) 466, 581, 1161, 1184
BsmAI GTCTC 3 cut(s) 200, 1281, 1465
BsmFI GGGAC 3 cut(s) 336, 404, 644
BsmI GAATGC 1 cut(s) 514
BsnI GGCC 4 cut(s) 280, 358, 458, 793
Bsp1286I GDGCHC 2 cut(s) 301, 946
Bsp13I TCCGGA 1 cut(s) 82
Bsp143I GATC 3 cut(s) 229, 1045, 1481
BspACI CCGC 5 cut(s) 567, 920, 1155, 1386, 1398
BspANI GGCC 4 cut(s) 280, 358, 458, 793
BspCNI CTCAG 5 cut(s) 77, 397, 742, 1102, 1461
BspEI TCCGGA 1 cut(s) 82
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 3 cut(s) 352, 420, 459
BspMI ACCTGC 2 cut(s) 1083, 1090
BspPI GGATC 1 cut(s) 1040
BsrDI GCAATG 4 cut(s) 121, 1023, 1035, 1470
BsrI ACTGG 2 cut(s) 638, 831
BssECI CCNNGG 4 cut(s) 353, 648, 1177, 1393
BssMI GATC 3 cut(s) 229, 1045, 1481
Bst2UI CCWGG 5 cut(s) 89, 355, 368, 1179, 1394
Bst4CI ACNGT 5 cut(s) 502, 783, 1067, 1202, 1369
Bst6I CTCTTC 1 cut(s) 593
BstC8I GCNNGC 2 cut(s) 196, 216
BstDEI CTNAG 6 cut(s) 64, 405, 729, 847, 1110, 1469
BstEII GGTNACC 1 cut(s) 1230
BstF5I GGATG 3 cut(s) 50, 1149, 1170
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 3 cut(s) 214, 779, 1285
BstKTI GATC 3 cut(s) 232, 1048, 1484
BstMAI GTCTC 3 cut(s) 200, 1281, 1465
BstMBI GATC 3 cut(s) 229, 1045, 1481
BstMWI GCNNNNNNNGC 3 cut(s) 260, 926, 1370
BstNI CCWGG 5 cut(s) 89, 355, 368, 1179, 1394
BstNSI RCATGY 2 cut(s) 194, 991
BstPAI GACNNNNGTC 1 cut(s) 324
BstPI GGTNACC 1 cut(s) 1230
BstSCI CCNGG 6 cut(s) 87, 353, 366, 968, 1177, 1392
BstV1I GCAGC 5 cut(s) 35, 731, 852, 1330, 1348
BstX2I RGATCY 2 cut(s) 1045, 1481
BstXI CCANNNNNNTGG 1 cut(s) 536
BstYI RGATCY 2 cut(s) 1045, 1481
BsuI GTATCC 1 cut(s) 671
BsuRI GGCC 4 cut(s) 280, 358, 458, 793
BtsCI GGATG 3 cut(s) 50, 1149, 1170
BtsI GCAGTG 2 cut(s) 1338, 1380
BtsIMutI CAGTG 4 cut(s) 299, 1072, 1338, 1380
BveI ACCTGC 2 cut(s) 1083, 1090
Cac8I GCNNGC 2 cut(s) 196, 216
CciI TCATGA 1 cut(s) 283
CfoI GCGC 3 cut(s) 214, 779, 1285
Cfr13I GGNCC 7 cut(s) 85, 278, 350, 418, 457, 733, 1298
Csp6I GTAC 2 cut(s) 330, 1418
CviAII CATG 7 cut(s) 191, 284, 322, 425, 988, 1036, 1280
CviQI GTAC 2 cut(s) 330, 1418
DdeI CTNAG 6 cut(s) 64, 405, 729, 847, 1110, 1469
DpnI GATC 3 cut(s) 231, 1047, 1483
DpnII GATC 3 cut(s) 229, 1045, 1481
EaeI YGGCCR 1 cut(s) 791
Eam1104I CTCTTC 1 cut(s) 593
EarI CTCTTC 1 cut(s) 593
EciI GGCGGA 1 cut(s) 1413
Eco47I GGWCC 5 cut(s) 85, 350, 418, 733, 1298
Eco57I CTGAAG 3 cut(s) 323, 617, 891
Eco91I GGTNACC 1 cut(s) 1230
EcoO65I GGTNACC 1 cut(s) 1230
EcoRII CCWGG 5 cut(s) 87, 353, 366, 1177, 1392
FaeI CATG 7 cut(s) 194, 287, 325, 428, 991, 1039, 1283
FalI AAGNNNNNCTT 6 cut(s) 178, 210, 843, 875, 1255, 1287
FaqI GGGAC 3 cut(s) 336, 404, 644
FatI CATG 7 cut(s) 190, 283, 321, 424, 987, 1035, 1279
FauI CCCGC 1 cut(s) 1162
FbaI TGATCA 1 cut(s) 229
FblI GTMKAC 1 cut(s) 785
Fnu4HI GCNGC 6 cut(s) 24, 720, 866, 1344, 1362, 1386
FokI GGATG 3 cut(s) 37, 1136, 1177
Fsp4HI GCNGC 6 cut(s) 24, 720, 866, 1344, 1362, 1386
FspBI CTAG 1 cut(s) 804
GlaI GCGC 3 cut(s) 213, 778, 1284
GluI GCNGC 6 cut(s) 24, 720, 866, 1344, 1362, 1386
GsaI CCCAGC 1 cut(s) 479
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 4 cut(s) 280, 358, 458, 793
HapII CCGG 2 cut(s) 83, 969
HhaI GCGC 3 cut(s) 214, 779, 1285
Hin1II CATG 7 cut(s) 194, 287, 325, 428, 991, 1039, 1283
Hin6I GCGC 3 cut(s) 212, 777, 1283
HinP1I GCGC 3 cut(s) 212, 777, 1283
HincII GTYRAC 1 cut(s) 639
HindII GTYRAC 1 cut(s) 639
HinfI GANTC 4 cut(s) 396, 409, 548, 980
HpaII CCGG 2 cut(s) 83, 969
HphI GGTGA 4 cut(s) 134, 581, 1138, 1334
Hpy166II GTNNAC 6 cut(s) 10, 572, 639, 786, 898, 1205
Hpy188I TCNGA 5 cut(s) 406, 535, 751, 913, 1111
Hpy188III TCNNGA 3 cut(s) 83, 284, 1305
Hpy8I GTNNAC 6 cut(s) 10, 572, 639, 786, 898, 1205
HpyAV CCTTC 3 cut(s) 584, 1117, 1311
HpyCH4III ACNGT 5 cut(s) 502, 783, 1067, 1202, 1369
HpyCH4V TGCA 9 cut(s) 23, 133, 154, 1028, 1033, 1060, 1078, 1346, 1463
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 926, 1370
HpyF3I CTNAG 6 cut(s) 64, 405, 729, 847, 1110, 1469
Hsp92II CATG 7 cut(s) 194, 287, 325, 428, 991, 1039, 1283
HspAI GCGC 3 cut(s) 212, 777, 1283
Kpn2I TCCGGA 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 3 cut(s) 229, 1045, 1481
LmnI GCTCC 2 cut(s) 296, 1400
Lsp1109I GCAGC 5 cut(s) 35, 731, 852, 1330, 1348
LweI GCATC 5 cut(s) 35, 1158, 1348, 1432, 1450
MaeI CTAG 1 cut(s) 804
MaeIII GTNAC 5 cut(s) 122, 223, 265, 1230, 1378
MalI GATC 3 cut(s) 231, 1047, 1483
MboI GATC 3 cut(s) 229, 1045, 1481
MboII GAAGA 4 cut(s) 27, 316, 610, 935
MflI RGATCY 2 cut(s) 1045, 1481
MhlI GDGCHC 2 cut(s) 301, 946
MlyI GAGTC 1 cut(s) 974
MmeI TCCRAC 1 cut(s) 957
MroI TCCGGA 1 cut(s) 82
MroXI GAANNNNTTC 2 cut(s) 400, 855
MseI TTAA 4 cut(s) 158, 666, 992, 1223
MslI CAYNNNNRTG 2 cut(s) 534, 1028
MspI CCGG 2 cut(s) 83, 969
MspR9I CCNGG 6 cut(s) 89, 355, 368, 970, 1179, 1394
Mva1269I GAATGC 1 cut(s) 514
MvaI CCWGG 5 cut(s) 89, 355, 368, 1179, 1394
MwoI GCNNNNNNNGC 3 cut(s) 260, 926, 1370
NciI CCSGG 1 cut(s) 970
NdeII GATC 3 cut(s) 229, 1045, 1481
NlaIII CATG 7 cut(s) 194, 287, 325, 428, 991, 1039, 1283
NlaIV GGNNCC 3 cut(s) 352, 420, 459
NmuCI GTSAC 3 cut(s) 122, 223, 1378
NspI RCATGY 2 cut(s) 194, 991
PagI TCATGA 1 cut(s) 283
PciI ACATGT 1 cut(s) 987
PctI GAATGC 1 cut(s) 514
PdmI GAANNNNTTC 2 cut(s) 400, 855
PfeI GAWTC 3 cut(s) 396, 409, 548
PflMI CCANNNNNTGG 1 cut(s) 581
PkrI GCNGC 6 cut(s) 25, 721, 867, 1345, 1363, 1387
PleI GAGTC 1 cut(s) 974
PpsI GAGTC 1 cut(s) 974
PscI ACATGT 1 cut(s) 987
PshAI GACNNNNGTC 1 cut(s) 324
PsiI TTATAA 1 cut(s) 1500
Psp6I CCWGG 5 cut(s) 87, 353, 366, 1177, 1392
PspEI GGTNACC 1 cut(s) 1230
PspFI CCCAGC 1 cut(s) 475
PspGI CCWGG 5 cut(s) 87, 353, 366, 1177, 1392
PspN4I GGNNCC 3 cut(s) 352, 420, 459
PspPI GGNCC 7 cut(s) 85, 278, 350, 418, 457, 733, 1298
PsuI RGATCY 2 cut(s) 1045, 1481
RsaI GTAC 2 cut(s) 331, 1419
RsaNI GTAC 2 cut(s) 330, 1418
RseI CAYNNNNRTG 2 cut(s) 534, 1028
SaqAI TTAA 4 cut(s) 158, 666, 992, 1223
SatI GCNGC 6 cut(s) 24, 720, 866, 1344, 1362, 1386
Sau3AI GATC 3 cut(s) 229, 1045, 1481
Sau96I GGNCC 7 cut(s) 85, 278, 350, 418, 457, 733, 1298
SchI GAGTC 1 cut(s) 974
ScrFI CCNGG 6 cut(s) 89, 355, 368, 970, 1179, 1394
SduI GDGCHC 2 cut(s) 301, 946
SfaNI GCATC 5 cut(s) 35, 1158, 1348, 1432, 1450
SinI GGWCC 5 cut(s) 85, 350, 418, 733, 1298
SmiMI CAYNNNNRTG 2 cut(s) 534, 1028
SsiI CCGC 5 cut(s) 567, 920, 1155, 1386, 1398
SspI AATATT 3 cut(s) 1143, 1240, 1408
SspMI CTAG 1 cut(s) 804
StyD4I CCNGG 6 cut(s) 87, 353, 366, 968, 1177, 1392
TaaI ACNGT 5 cut(s) 502, 783, 1067, 1202, 1369
TaqI TCGA 4 cut(s) 363, 1052, 1121, 1304
TatI WGTACW 1 cut(s) 1417
TauI GCSGC 1 cut(s) 1388
TfiI GAWTC 3 cut(s) 396, 409, 548
Tru1I TTAA 4 cut(s) 158, 666, 992, 1223
Tru9I TTAA 4 cut(s) 158, 666, 992, 1223
TscAI CASTG 4 cut(s) 306, 1072, 1345, 1387
TseFI GTSAC 3 cut(s) 122, 223, 1378
TseI GCWGC 5 cut(s) 23, 719, 865, 1343, 1361
Tsp45I GTSAC 3 cut(s) 122, 223, 1378
TspDTI ATGAA 5 cut(s) 31, 39, 65, 159, 441
TspGWI ACGGA 1 cut(s) 725
TspRI CASTG 4 cut(s) 306, 1072, 1345, 1387
Van91I CCANNNNNTGG 1 cut(s) 581
VpaK11BI GGWCC 5 cut(s) 85, 350, 418, 733, 1298
XapI RAATTY 2 cut(s) 432, 1313
XceI RCATGY 2 cut(s) 194, 991
XmiI GTMKAC 1 cut(s) 785
XmnI GAANNNNTTC 2 cut(s) 400, 855
XspI CTAG 1 cut(s) 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.