Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0018883

Physical Location & Seq

Genomic Coordinates Forward (+)

25457722 .. 25458027

Gene Structure 306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1115500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGGAGATGCGCGGCAACCATGTCAAGAAGAAAGCAGAGCTTGCCGAGAAACCAACCAGCCCAATGTTAAAGGATTAGTACTGGCTTCATCAGCTGACTTGAAATCGAAGCTTAGAGAATCAGGTAACTTTGATCCCCACCTCCAGGCGAAAGTACTGAAAGTGGTTGATGTTTCTTATGGAGGAGAGGATGGTTTCAATCAGGCTGTTAAGTTGTCGGCGGAGTTTCTGTCCAACGTGAAATTTATACAGGAGCACAACTTGCTAGGAAGACACCTTGAAGAGGTTAACCATGGGCGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

102

Amino Acids

11.24

Weight (kDa)

6.9

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_2	PF03464	18 - 78	2.2e-12	eRF1 domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018883)

Species	Orthologous Gene IDs
malus_domestica	MD06G1115500.v1.1 MD06G1116600.v1.1
prunus_persica	Prupe.8G207900_v2.0.a1
rosa_multiflora	Rmu_sc0002064.1_g000002 Rmu_sc0009394.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017050 Rroxscaffold_1G00032410 Rroxscaffold_5G00375240 Rroxscaffold_7G00202710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	13
AciI	CCGC	2 cut(s)	13, 221
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	2 cut(s)	81, 156
AfiI	CCNNNNNNNGG	2 cut(s)	145, 283
AgsI	TTSAA	3 cut(s)	103, 199, 281
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	3 cut(s)	41, 95, 112
AluI	AGCT	3 cut(s)	41, 95, 112
Alw21I	GWGCWC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	258
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	146
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
BmcAI	AGTACT	2 cut(s)	81, 156
Bme1390I	CCNGG	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 283
Bse1I	ACTGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	145, 283
BseNI	ACTGG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	145, 283
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	133
Bsp19I	CCATGG	1 cut(s)	292
BspACI	CCGC	2 cut(s)	13, 221
BspFNI	CGCG	1 cut(s)	13
BspPI	GGATC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	276
BstAPI	GCANNNNNTGC	2 cut(s)	42, 262
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	292
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 92, 262
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	277
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	80, 155
CviAII	CATG	2 cut(s)	21, 293
CviJI	RGCY	6 cut(s)	41, 61, 86, 95, 112, 206
CviKI_1	RGCY	6 cut(s)	41, 61, 86, 95, 112, 206
CviQI	GTAC	2 cut(s)	80, 155
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	292
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	2 cut(s)	24, 296
FaiI	YATR	4 cut(s)	22, 180, 248, 294
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FatI	CATG	2 cut(s)	20, 292
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	24, 296
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	1 cut(s)	119
HpaI	GTTAAC	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 92, 262
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	24, 296
HspAI	GCGC	1 cut(s)	11
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	7 cut(s)	68, 71, 108, 131, 158, 188, 236
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	3 cut(s)	41, 282, 293
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	4 cut(s)	152, 176, 181, 277
MseI	TTAA	3 cut(s)	69, 210, 288
MspA1I	CMGCKG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	3 cut(s)	42, 92, 262
NcoI	CCATGG	1 cut(s)	292
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	24, 296
NmeAIII	GCCGAG	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	2 cut(s)	81, 156
RsaNI	GTAC	2 cut(s)	80, 155
SaqAI	TTAA	3 cut(s)	69, 210, 288
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	1 cut(s)	133
ScaI	AGTACT	2 cut(s)	81, 156
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	8 cut(s)	43, 97, 114, 127, 144, 240, 279, 288
Sse9I	AATT	1 cut(s)	242
SsiI	CCGC	2 cut(s)	13, 221
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	292
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	107
TasI	AATT	1 cut(s)	242
TatI	WGTACW	2 cut(s)	79, 154
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	3 cut(s)	69, 210, 288
Tru9I	TTAA	3 cut(s)	69, 210, 288
TspDTI	ATGAA	1 cut(s)	78
XagI	CCTNNNNNAGG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	242
XspI	CTAG	1 cut(s)	266
ZrmI	AGTACT	2 cut(s)	81, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.