Rroxscaffold_1G00032410

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
46356183 .. 46357951
1769 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00032410.1

Sequence Viewer

Length: 159 bp
ATGGGGGTAATAAAGTTGGCAAAGAAAGCGTTAGTTCATGACAAAGGCAATTCGATTGTGGCATTCAAGCTTTATGACCTATTTAGAGGCCTATATGGAATCGGTCGAAGCCAATACAAGTGGCTTTGGAGCAACGACATTATAAGAGCAAGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.95

Weight (kDa)

10.09

Isoelectric Point (pI)

12.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 143
AgsI TTSAA 1 cut(s) 67
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
AoxI GGCC 1 cut(s) 88
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 1 cut(s) 90
BsiEI CGRYCG 1 cut(s) 106
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 1 cut(s) 90
BspANI GGCC 1 cut(s) 90
BspHI TCATGA 1 cut(s) 37
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 90
CciI TCATGA 1 cut(s) 37
CspCI CAANNNNNGTGG 2 cut(s) 101, 136
CviAII CATG 1 cut(s) 38
CviJI RGCY 4 cut(s) 70, 90, 111, 124
CviKI_1 RGCY 4 cut(s) 70, 90, 111, 124
Eco147I AGGCCT 1 cut(s) 90
FaeI CATG 1 cut(s) 41
FaiI YATR 5 cut(s) 39, 75, 94, 96, 143
FatI CATG 1 cut(s) 37
HaeIII GGCC 1 cut(s) 90
Hin1II CATG 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 1 cut(s) 99
Hpy188III TCNNGA 1 cut(s) 38
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
Hsp92II CATG 1 cut(s) 41
LmnI GCTCC 1 cut(s) 129
MluCI AATT 1 cut(s) 49
MnlI CCTC 1 cut(s) 80
Mva1269I GAATGC 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 26
NlaIII CATG 1 cut(s) 41
PagI TCATGA 1 cut(s) 37
PceI AGGCCT 1 cut(s) 90
PctI GAATGC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 99
PsiI TTATAA 1 cut(s) 143
SetI ASST 2 cut(s) 72, 81
SgeI CNNG 3 cut(s) 50, 79, 130
Sse9I AATT 1 cut(s) 49
SseBI AGGCCT 1 cut(s) 90
StuI AGGCCT 1 cut(s) 90
TaqI TCGA 2 cut(s) 53, 106
TaqII GACCGA 1 cut(s) 92
TasI AATT 1 cut(s) 49
TfiI GAWTC 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.