Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0018883

Physical Location & Seq

Genomic Coordinates Forward (+)

19394000 .. 19395630

Gene Structure 1631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G207900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCTCATTCCATAACTCGTATTGGACAAGAGGCCCGCGACAACCATGTTACCAAGACAGCAGAGCTTGCCACAAACCTTTTTATTGATCCAGCCACCAACCAGCCCAATGTTAAAGGATTAATACTGGCAGGATCAGCTGATTTCAAAACTAAGCTTAGTGAGTCAGGTAGGTTTGATCCTCATCTGCAGGCCAAAATACTGAAAGTTGTGGATATTTCTTATGGAGGGGAGGAAGGTTTTAATCAGGCTATTAAGATGTCTCAAGAGATTCTGTTCAATGTGAAATTTATACAGGAGCAGCACTTGTTAGGCAAATACTTTGAGGAAGTTAACCAGGATACAGGAAAGTATGTTGTTGGTATACTCATTGTGTATGAAAATCTGGAGATCAATAGGTATGTGTTAAAGAACTCCAAGACTGATGAGATTTTTGTTAAACAGTTGAACGAGGAGGAGGAAAACAATGAAAGCAACTTTCGAGATCCTGTCACCTCCGACAAACTAGAGATTCAGGAGAAGATGTCACTGCTAGAGTGGCTTGCTGATGAGTACAAGAGCTTTGGTTGTACTCTTGAGTTTGTCACCAACAAATCACAAGAGGGGTCACAGTTCTGTCGAGGTTTTGGGGGGATTGGAGGAATTCTGCGGTACCAGCTCGATATGAGGTCATTCGATGAGTTTGCTGATGATGAAGTTGAGGAAGATGCGGAAGTTTACGATGTTGGAGAAGCTGAAGATGATTCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

251

Amino Acids

28.41

Weight (kDa)

4.49

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018883)

Species	Orthologous Gene IDs
malus_domestica	MD06G1115500.v1.1 MD06G1116600.v1.1
prunus_persica	Prupe.8G207900_v2.0.a1
rosa_multiflora	Rmu_sc0002064.1_g000002 Rmu_sc0009394.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017050 Rroxscaffold_1G00032410 Rroxscaffold_5G00375240 Rroxscaffold_7G00202710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	651
AccB1I	GGYRCC	1 cut(s)	651
AccI	GTMKAC	1 cut(s)	364
AccII	CGCG	1 cut(s)	39
AciI	CCGC	3 cut(s)	37, 649, 710
AclWI	GGATC	4 cut(s)	83, 142, 173, 479
AcsI	RAATTY	2 cut(s)	287, 642
AfaI	GTAC	3 cut(s)	554, 571, 653
AgsI	TTSAA	3 cut(s)	148, 280, 448
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	6 cut(s)	67, 140, 157, 561, 658, 734
AluI	AGCT	6 cut(s)	67, 140, 157, 561, 658, 734
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	4 cut(s)	83, 142, 173, 479
AoxI	GGCC	2 cut(s)	33, 192
ApeKI	GCWGC	1 cut(s)	301
ApoI	RAATTY	2 cut(s)	287, 642
AseI	ATTAAT	1 cut(s)	122
Asp718I	GGTACC	1 cut(s)	651
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	484, 577
BanI	GGYRCC	1 cut(s)	651
BbvI	GCAGC	1 cut(s)	313
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	1 cut(s)	338
BciVI	GTATCC	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	2 cut(s)	506, 533
BfmI	CTRYAG	1 cut(s)	188
BfuI	GTATCC	1 cut(s)	334
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
Bme1390I	CCNGG	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	653
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	697
BpmI	CTGGAG	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	249, 596
BsaBI	GATNNNNATC	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bse1I	ACTGG	1 cut(s)	132
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	338
BseJI	GATNNNNATC	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	2 cut(s)	467, 470
BseXI	GCAGC	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	35, 194
BshNI	GGYRCC	1 cut(s)	651
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	2 cut(s)	35, 194
Bsp143I	GATC	5 cut(s)	88, 134, 178, 390, 484
BspACI	CCGC	3 cut(s)	37, 649, 710
BspANI	GGCC	2 cut(s)	35, 194
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	653
BspMAI	CTGCAG	1 cut(s)	192
BspPI	GGATC	4 cut(s)	83, 142, 173, 479
BspT107I	GGYRCC	1 cut(s)	651
BsrI	ACTGG	1 cut(s)	132
BssMI	GATC	5 cut(s)	88, 134, 178, 390, 484
BssNAI	GTATAC	1 cut(s)	365
Bst1107I	GTATAC	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	2 cut(s)	444, 612
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	4 cut(s)	37, 69, 192, 543
BstDEI	CTNAG	2 cut(s)	153, 158
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	5 cut(s)	91, 137, 181, 393, 487
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	5 cut(s)	88, 134, 178, 390, 484
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 137, 538, 655
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	188
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BstZ17I	GTATAC	1 cut(s)	365
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	35, 194
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	1 cut(s)	527
Cac8I	GCNNGC	4 cut(s)	37, 69, 192, 543
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	3 cut(s)	553, 570, 652
CviAII	CATG	1 cut(s)	47
CviQI	GTAC	3 cut(s)	553, 570, 652
DdeI	CTNAG	2 cut(s)	153, 158
DpnI	GATC	5 cut(s)	90, 136, 180, 392, 486
DpnII	GATC	5 cut(s)	88, 134, 178, 390, 484
EcoRI	GAATTC	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	336
FaeI	CATG	1 cut(s)	50
FaiI	YATR	9 cut(s)	14, 48, 225, 293, 354, 365, 378, 402, 665
FatI	CATG	1 cut(s)	46
FauI	CCCGC	1 cut(s)	44
FblI	GTMKAC	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	302
FspBI	CTAG	2 cut(s)	506, 533
GluI	GCNGC	1 cut(s)	302
GsuI	CTGGAG	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	35, 194
Hin1II	CATG	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	4 cut(s)	164, 271, 511, 743
HpaI	GTTAAC	1 cut(s)	334
HphI	GGTGA	2 cut(s)	484, 577
Hpy166II	GTNNAC	3 cut(s)	334, 365, 718
Hpy188I	TCNGA	2 cut(s)	499, 748
Hpy188III	TCNNGA	5 cut(s)	266, 386, 482, 515, 575
Hpy8I	GTNNAC	3 cut(s)	334, 365, 718
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	2 cut(s)	444, 612
HpyCH4V	TGCA	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 137, 538, 655
HpyF3I	CTNAG	2 cut(s)	153, 158
Hsp92II	CATG	1 cut(s)	50
KpnI	GGTACC	1 cut(s)	655
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	5 cut(s)	88, 134, 178, 390, 484
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	2 cut(s)	506, 533
MaeIII	GTNAC	5 cut(s)	49, 490, 525, 583, 606
MalI	GATC	5 cut(s)	90, 136, 180, 392, 486
MboI	GATC	5 cut(s)	88, 134, 178, 390, 484
MboII	GAAGA	3 cut(s)	532, 716, 749
MflI	RGATCY	1 cut(s)	484
MluCI	AATT	2 cut(s)	287, 642
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	2 cut(s)	522, 706
MseI	TTAA	7 cut(s)	114, 122, 243, 255, 333, 407, 438
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	4 cut(s)	68, 137, 538, 655
NdeII	GATC	5 cut(s)	88, 134, 178, 390, 484
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	1 cut(s)	653
NmuCI	GTSAC	4 cut(s)	490, 525, 583, 606
PfeI	GAWTC	3 cut(s)	271, 511, 743
PkrI	GCNGC	1 cut(s)	303
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PshBI	ATTAAT	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	653
PspPI	GGNCC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	3 cut(s)	554, 571, 653
RsaNI	GTAC	3 cut(s)	553, 570, 652
SaqAI	TTAA	7 cut(s)	114, 122, 243, 255, 333, 407, 438
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	5 cut(s)	88, 134, 178, 390, 484
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	338
SfaNI	GCATC	1 cut(s)	697
SfcI	CTRYAG	1 cut(s)	188
SmlI	CTYRAG	2 cut(s)	264, 575
SmoI	CTYRAG	2 cut(s)	264, 575
Sse9I	AATT	2 cut(s)	287, 642
SsiI	CCGC	3 cut(s)	37, 649, 710
SspMI	CTAG	2 cut(s)	506, 533
StyD4I	CCNGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	444, 612
TaqI	TCGA	4 cut(s)	481, 619, 660, 675
TasI	AATT	2 cut(s)	287, 642
TatI	WGTACW	2 cut(s)	552, 569
TfiI	GAWTC	3 cut(s)	271, 511, 743
Tru1I	TTAA	7 cut(s)	114, 122, 243, 255, 333, 407, 438
Tru9I	TTAA	7 cut(s)	114, 122, 243, 255, 333, 407, 438
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	4 cut(s)	490, 525, 583, 606
TseI	GCWGC	1 cut(s)	301
Tsp45I	GTSAC	4 cut(s)	490, 525, 583, 606
TspDTI	ATGAA	3 cut(s)	393, 483, 708
TspRI	CASTG	1 cut(s)	534
VspI	ATTAAT	1 cut(s)	122
XapI	RAATTY	2 cut(s)	287, 642
XmiI	GTMKAC	1 cut(s)	364
XspI	CTAG	2 cut(s)	506, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.