Rroxscaffold_1G00017050

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
21211558 .. 21225467
13910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00017050.1

Sequence Viewer

Length: 210 bp
ATGGGGGCAATAAAGTTGGCAAAGAAAGCATCAGTTCATGACAAAGGCAATTCAAATTCGGGGAATCCTGCAGGCCGGAGAACCGGGGAGCAACCGATCCGCCTTGTTCGCTGGCTCTTTGTTGAGAATGCGATTGCTGTAGAAGAAGCCCAACTTGATGAACCTTTAGGTACTTCGAAGAAATGGGCTGCAACTTGGCCCATATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.5

Weight (kDa)

9.69

Isoelectric Point (pI)

27.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 100
AclWI GGATC 1 cut(s) 91
AcsI RAATTY 1 cut(s) 55
AfaI GTAC 1 cut(s) 172
AgsI TTSAA 1 cut(s) 54
AlwI GGATC 1 cut(s) 91
AoxI GGCC 2 cut(s) 73, 197
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 198
AsuC2I CCSGG 1 cut(s) 85
AsuII TTCGAA 1 cut(s) 176
BbvI GCAGC 1 cut(s) 175
BcnI CCSGG 1 cut(s) 85
BfmI CTRYAG 2 cut(s) 69, 138
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 84
BseXI GCAGC 1 cut(s) 175
BshFI GGCC 2 cut(s) 75, 199
BsiSI CCGG 2 cut(s) 76, 84
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 2 cut(s) 75, 199
Bsp119I TTCGAA 1 cut(s) 176
Bsp143I GATC 1 cut(s) 96
BspACI CCGC 1 cut(s) 100
BspANI GGCC 2 cut(s) 75, 199
BspHI TCATGA 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 73
BspPI GGATC 1 cut(s) 91
BspT104I TTCGAA 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 73, 113
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstMWI GCNNNNNNNGC 2 cut(s) 26, 108
BstSCI CCNGG 1 cut(s) 83
BstSFI CTRYAG 2 cut(s) 69, 138
BstV1I GCAGC 1 cut(s) 175
BsuRI GGCC 2 cut(s) 75, 199
Cac8I GCNNGC 2 cut(s) 73, 113
CciI TCATGA 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 198
Csp6I GTAC 1 cut(s) 171
CviAII CATG 1 cut(s) 38
CviJI RGCY 5 cut(s) 75, 115, 149, 188, 199
CviKI_1 RGCY 5 cut(s) 75, 115, 149, 188, 199
CviQI GTAC 1 cut(s) 171
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
EciI GGCGGA 1 cut(s) 89
FaeI CATG 1 cut(s) 41
FaiI YATR 2 cut(s) 39, 203
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 2 cut(s) 75, 199
HapII CCGG 2 cut(s) 76, 84
Hin1II CATG 1 cut(s) 41
HinfI GANTC 1 cut(s) 64
HpaII CCGG 2 cut(s) 76, 84
Hpy188III TCNNGA 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 71, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 108
Hsp92II CATG 1 cut(s) 41
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 5 cut(s) 57, 81, 89, 97, 97
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 38
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MboII GAAGA 2 cut(s) 155, 190
MluCI AATT 2 cut(s) 49, 55
MspI CCGG 2 cut(s) 76, 84
MspR9I CCNGG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 26, 108
NciI CCSGG 1 cut(s) 85
NdeII GATC 1 cut(s) 96
NlaIII CATG 1 cut(s) 41
NspV TTCGAA 1 cut(s) 176
PagI TCATGA 1 cut(s) 37
PctI GAATGC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 198
PstI CTGCAG 1 cut(s) 73
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 198
SbfI CCTGCAGG 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 85
SdaI CCTGCAGG 1 cut(s) 73
SetI ASST 2 cut(s) 166, 172
SfaNI GCATC 1 cut(s) 38
SfcI CTRYAG 2 cut(s) 69, 138
SfuI TTCGAA 1 cut(s) 176
Sse8387I CCTGCAGG 1 cut(s) 73
Sse9I AATT 2 cut(s) 49, 55
SsiI CCGC 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 83
TaqI TCGA 1 cut(s) 176
TasI AATT 2 cut(s) 49, 55
TfiI GAWTC 1 cut(s) 64
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 26, 174
XapI RAATTY 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.