Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002064.1

Orthogroup ID

OG0018883

Physical Location & Seq

Genomic Coordinates Reverse (-)

13687 .. 14333

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002064.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ctgcctgaaagtcttcttgttcaacaaagtttactgactcaagatgtgatacaccattcaagagactctagtggaaagctgaatcaggaagctattcaaagcagtaagaaagttgctatatccctgggccatgacgaggaggcactcaacaactatattgctaaggcagcagaaaatgtcaatgttgcaggattaataccgacaggatcagcgaacttcaaaactatgcttggtgggtcagaaaagttcgatcaatgtctgcaagctaaaatactaaatgtggtgagtgttcgctgtggaggagagaatggtttcgatcaggctattgacttctcatcaaagattctatccaatgtgaaatttgtgcaagaaaaacgcttgatggaaaaatactttgaagagattagattggatacagggaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

141

Amino Acids

15.48

Weight (kDa)

5.93

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018883)

Species	Orthologous Gene IDs
malus_domestica	MD06G1115500.v1.1 MD06G1116600.v1.1
prunus_persica	Prupe.8G207900_v2.0.a1
rosa_multiflora	Rmu_sc0002064.1_g000002 Rmu_sc0009394.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017050 Rroxscaffold_1G00032410 Rroxscaffold_5G00375240 Rroxscaffold_7G00202710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	5 cut(s)	23, 60, 98, 220, 398
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	3 cut(s)	79, 92, 266
AluI	AGCT	3 cut(s)	79, 92, 266
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	359
AseI	ATTAAT	1 cut(s)	194
Asp700I	GAANNNNTTC	3 cut(s)	12, 93, 311
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	179
BccI	CCATC	1 cut(s)	376
BciT130I	CCWGG	1 cut(s)	125
BciVI	GTATCC	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	406
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	5
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	123, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	123, 124
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseRI	GAGGAG	2 cut(s)	152, 315
BseXI	GCAGC	1 cut(s)	179
BshFI	GGCC	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	206, 250, 316
BspANI	GGCC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	123, 124
BssMI	GATC	3 cut(s)	206, 250, 316
Bst2UI	CCWGG	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	393
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	162
BstKTI	GATC	3 cut(s)	209, 253, 319
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	3 cut(s)	206, 250, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	5
BsuI	GTATCC	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	127
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	5 cut(s)	79, 92, 129, 266, 323
CviKI_1	RGCY	5 cut(s)	79, 92, 129, 266, 323
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	3 cut(s)	208, 252, 318
DpnII	GATC	3 cut(s)	206, 250, 316
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	134
FaiI	YATR	4 cut(s)	119, 132, 156, 227
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	134
HinfI	GANTC	4 cut(s)	37, 65, 82, 343
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	3 cut(s)	41, 60, 86
Hpy8I	GTNNAC	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	188, 262, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	134
Kzo9I	GATC	3 cut(s)	206, 250, 316
LpnPI	CCDG	8 cut(s)	18, 71, 110, 137, 174, 189, 305, 402
Lsp1109I	GCAGC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	69
MalI	GATC	3 cut(s)	208, 252, 318
MboI	GATC	3 cut(s)	206, 250, 316
MboII	GAAGA	2 cut(s)	5, 410
MluCI	AATT	1 cut(s)	359
MlyI	GAGTC	2 cut(s)	31, 59
MnlI	CCTC	3 cut(s)	130, 133, 293
MroXI	GAANNNNTTC	3 cut(s)	12, 93, 311
MseI	TTAA	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	3 cut(s)	206, 250, 316
NlaIII	CATG	1 cut(s)	134
PasI	CCCWGGG	1 cut(s)	124
PdmI	GAANNNNTTC	3 cut(s)	12, 93, 311
PfeI	GAWTC	2 cut(s)	82, 343
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	2 cut(s)	31, 59
PpsI	GAGTC	2 cut(s)	31, 59
PshBI	ATTAAT	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	3 cut(s)	206, 250, 316
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	2 cut(s)	31, 59
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	3 cut(s)	81, 94, 268
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	1 cut(s)	359
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	123
TaqI	TCGA	2 cut(s)	249, 315
TasI	AATT	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	82, 343
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TseI	GCWGC	1 cut(s)	167
VspI	ATTAAT	1 cut(s)	194
XapI	RAATTY	1 cut(s)	359
XmnI	GAANNNNTTC	3 cut(s)	12, 93, 311
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.