Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0018883

Physical Location & Seq

Genomic Coordinates Forward (+)

50942264 .. 50945373

Gene Structure 3110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGATATTGGAGAAGTATCAATGGATTATGGAACTACATCATGTTGGTATCACATACTCTTATCAATCTTGTTTTCTGGAATATTTAATTTGCTAGAGGAGGCATGCCACAACTATATTGCTGAGGCAGCAGAAAATGTCACCAAGACTTTTACTAATCCTGCCACCAACCAACCTAATGTTGCAGGATTAATACTGACAGGATCAGCGGACTTCAAAACTGTGCTTGGTGGGTCAGAAAAATTAGATCAATGTCTGTATGCCAAAATAATAAATGTGGTGAGTGTTCGCTATGGAGGAGAGAATGGTTTTGATCAGGCTATTGACTTGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

111

Amino Acids

12.03

Weight (kDa)

4.35

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_2	PF03464	31 - 109	3.8e-11	eRF1 domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018883)

Species	Orthologous Gene IDs
malus_domestica	MD06G1115500.v1.1 MD06G1116600.v1.1
prunus_persica	Prupe.8G207900_v2.0.a1
rosa_multiflora	Rmu_sc0002064.1_g000002 Rmu_sc0009394.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017050 Rroxscaffold_1G00032410 Rroxscaffold_5G00375240 Rroxscaffold_7G00202710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	217
AlwI	GGATC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	128
AseI	ATTAAT	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	133, 292
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	140
BclI	TGATCA	1 cut(s)	313
BfaI	CTAG	1 cut(s)	95
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	113, 312
BseXI	GCAGC	1 cut(s)	140
Bsp143I	GATC	3 cut(s)	203, 247, 313
BspACI	CCGC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	115
BspPI	GGATC	1 cut(s)	211
BssMI	GATC	3 cut(s)	203, 247, 313
Bst4CI	ACNGT	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	123
BstKTI	GATC	3 cut(s)	206, 250, 316
BstMBI	GATC	3 cut(s)	203, 247, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	106
CviAII	CATG	2 cut(s)	42, 105
CviJI	RGCY	1 cut(s)	320
CviKI_1	RGCY	1 cut(s)	320
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	3 cut(s)	205, 249, 315
DpnII	GATC	3 cut(s)	203, 247, 313
FaeI	CATG	2 cut(s)	45, 108
FaiI	YATR	8 cut(s)	30, 43, 56, 106, 117, 261, 294, 334
FatI	CATG	2 cut(s)	41, 104
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	45, 108
HphI	GGTGA	2 cut(s)	133, 292
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	78
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	45, 108
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	203, 247, 313
LpnPI	CCDG	5 cut(s)	63, 171, 174, 186, 302
Lsp1109I	GCAGC	1 cut(s)	140
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	3 cut(s)	205, 249, 315
MboI	GATC	3 cut(s)	203, 247, 313
MluCI	AATT	2 cut(s)	88, 242
MnlI	CCTC	4 cut(s)	91, 94, 118, 290
MseI	TTAA	2 cut(s)	87, 191
MspA1I	CMGCKG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	3 cut(s)	203, 247, 313
NlaIII	CATG	2 cut(s)	45, 108
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	108
PaeI	GCATGC	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	130
PshBI	ATTAAT	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	87, 191
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	3 cut(s)	203, 247, 313
SetI	ASST	1 cut(s)	178
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	2 cut(s)	88, 242
SsiI	CCGC	1 cut(s)	209
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	223
TasI	AATT	2 cut(s)	88, 242
Tru1I	TTAA	2 cut(s)	87, 191
Tru9I	TTAA	2 cut(s)	87, 191
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	139
VspI	ATTAAT	1 cut(s)	191
XceI	RCATGY	1 cut(s)	108
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.