Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0018883

Physical Location & Seq

Genomic Coordinates Reverse (-)

56082829 .. 56093692

Gene Structure 10864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGGGCGATAAAGTTGGCAAAGGAAGCGTCGGTACATGACAAAGGCAATTCGGTAGTGGCATTCAAGCTTTATGACCTATTTAGAGGCCTATATGGAAACAGTCAAGCCAACACAAAGGATGCTAAAGGTGAAATCGGGAGAAGACTAAGATGGAAAACTCAACTGTGTCAAGAAGAGAGGAGGCATCCACAACTATATTGCTTTGAGGCAGCAGAAAATGTCACCAAGACTTTTACTAACCTTGCCACCAACCAACCTAATGTTGCAGGATTAACACCGACAAGATCAGCGGACTTCAAAACTGTGCTTGGTGGGTCAGAAAAATTCGATCAATGTTTGTATGCCAAAATAATAAATGTGCCTGCAATTCAAATATCATCTACTAGTGAAATGCTTGAGATCCAAGTTGACAGTATCGTATCATATATACCAGGTCAGGTTTCCCAACTTATACTCGTGGAAATAGACTTTCGTTATAACGAAAGAATATCACAGCTGATTGACAAATGGATCAATATAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

175

Amino Acids

19.7

Weight (kDa)

8.4

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018883)

Species	Orthologous Gene IDs
malus_domestica	MD06G1115500.v1.1 MD06G1116600.v1.1
prunus_persica	Prupe.8G207900_v2.0.a1
rosa_multiflora	Rmu_sc0002064.1_g000002 Rmu_sc0009394.1_g000002
rosa_roxburghii	Rroxscaffold_1G00017050 Rroxscaffold_1G00032410 Rroxscaffold_5G00375240 Rroxscaffold_7G00202710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	2 cut(s)	397, 521
AcsI	RAATTY	1 cut(s)	326
AfaI	GTAC	1 cut(s)	36
AgsI	TTSAA	3 cut(s)	67, 301, 374
AhlI	ACTAGT	1 cut(s)	386
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	2 cut(s)	70, 499
AluI	AGCT	2 cut(s)	70, 499
AlwI	GGATC	2 cut(s)	397, 521
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	326
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
AsuHPI	GGTGA	2 cut(s)	143, 217
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
BauI	CACGAG	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	435
BcuI	ACTAGT	1 cut(s)	386
BfaI	CTAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	2 cut(s)	112, 196
BpiI	GAAGAC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	435
BseGI	GGATG	2 cut(s)	127, 187
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	224
BshFI	GGCC	1 cut(s)	90
BsmI	GAATGC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	90
Bsp143I	GATC	4 cut(s)	287, 331, 402, 513
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	1 cut(s)	90
BspPI	GGATC	2 cut(s)	397, 521
BssMI	GATC	4 cut(s)	287, 331, 402, 513
BssSI	CACGAG	1 cut(s)	458
Bst2BI	CACGAG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	4 cut(s)	104, 168, 307, 416
Bst6I	CTCTTC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	127, 187
BstKTI	GATC	4 cut(s)	290, 334, 405, 516
BstMBI	GATC	4 cut(s)	287, 331, 402, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	127, 187
Cac8I	GCNNGC	1 cut(s)	366
CseI	GACGC	1 cut(s)	18
CsiI	ACCWGGT	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	35
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	4 cut(s)	70, 90, 110, 499
CviKI_1	RGCY	4 cut(s)	70, 90, 110, 499
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	4 cut(s)	289, 333, 404, 515
DpnII	GATC	4 cut(s)	287, 331, 402, 513
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	433
FaeI	CATG	1 cut(s)	41
FatI	CATG	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	2 cut(s)	134, 174
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	90
HgaI	GACGC	1 cut(s)	18
Hin1II	CATG	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	68
HphI	GGTGA	2 cut(s)	143, 217
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	2 cut(s)	322, 527
Hpy188III	TCNNGA	2 cut(s)	139, 173
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	1 cut(s)	34
HpyCH4III	ACNGT	4 cut(s)	104, 168, 307, 416
HpyCH4V	TGCA	2 cut(s)	269, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	149
Hsp92II	CATG	1 cut(s)	41
Kzo9I	GATC	4 cut(s)	287, 331, 402, 513
LpnPI	CCDG	5 cut(s)	255, 378, 420, 425, 447
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	2 cut(s)	112, 196
MabI	ACCWGGT	1 cut(s)	433
MaeI	CTAG	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	4 cut(s)	289, 333, 404, 515
MboI	GATC	4 cut(s)	287, 331, 402, 513
MboII	GAAGA	2 cut(s)	156, 188
MflI	RGATCY	1 cut(s)	402
MluCI	AATT	3 cut(s)	49, 326, 369
MnlI	CCTC	4 cut(s)	80, 174, 177, 202
MseI	TTAA	1 cut(s)	275
MspA1I	CMGCKG	2 cut(s)	293, 499
MspR9I	CCNGG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	4 cut(s)	287, 331, 402, 513
NlaIII	CATG	1 cut(s)	41
NmuCI	GTSAC	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	90
PctI	GAATGC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	402
PvuII	CAGCTG	1 cut(s)	499
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	4 cut(s)	287, 331, 402, 513
ScrFI	CCNGG	1 cut(s)	435
SetI	ASST	8 cut(s)	72, 81, 133, 246, 262, 439, 444, 501
SexAI	ACCWGGT	1 cut(s)	433
SfaNI	GCATC	2 cut(s)	112, 196
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SpeI	ACTAGT	1 cut(s)	386
Sse9I	AATT	3 cut(s)	49, 326, 369
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	293
SspMI	CTAG	1 cut(s)	387
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	4 cut(s)	104, 168, 307, 416
TaqI	TCGA	1 cut(s)	330
TasI	AATT	3 cut(s)	49, 326, 369
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	223
XapI	RAATTY	1 cut(s)	326
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.