MD06G1125800.v1.1

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0006408
Physical Location & Seq
Forward (+)
26778436 .. 26786542
8107 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1125800.v1.1.491

Sequence Viewer

Length: 384 bp
ATGAAATTTACGGTGGATGGAATTAAGCACACGTTGGTTGGAGTTGGAGCGTTAGAAAGAATTTGGTCAATATCGAGGATGCCTGTCTGCGAAGATAAAAGTCACGAGGAATTTAGATGGGAAGATTATCAGTTGGGGAATAGAGGAGGTGAAGCGAGTACATTGCAGTCAATGTCGAGCATGCTGGTTTCTGAAGATAAAAGTCACGAGGAACTTAGATGGGAATATTACCAGTTCAGGAATATAAGTTGCTTCAGTGGTTCAGCAGGCATTCTTGGTCAGAATCATTTGGGACGGTTCTCTGCAGGGACTCAGATGTCAATCCATCGTGGTGGAGCAGCACCGTGGATTCAATATGGACTTTCGACCATGCCTCTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2

Protein Analysis

128

Amino Acids

14.33

Weight (kDa)

6.18

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 316
AcsI RAATTY 3 cut(s) 5, 60, 110
AcuI CTGAAG 2 cut(s) 213, 238
AfaI GTAC 1 cut(s) 160
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 1 cut(s) 353
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 3 cut(s) 5, 60, 110
AsuHPI GGTGA 1 cut(s) 161
BauI CACGAG 2 cut(s) 104, 206
BbvI GCAGC 1 cut(s) 350
BccI CCATC 4 cut(s) 11, 111, 213, 333
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BfmI CTRYAG 1 cut(s) 303
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
BmsI GCATC 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 344
BseGI GGATG 2 cut(s) 22, 84
BseJI GATNNNNATC 1 cut(s) 320
BseMI GCAATG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 350
BslFI GGGAC 2 cut(s) 306, 322
BsmFI GGGAC 2 cut(s) 306, 322
BsmI GAATGC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 325
BspMAI CTGCAG 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 161
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 344
BssSI CACGAG 2 cut(s) 104, 206
Bst2BI CACGAG 2 cut(s) 104, 206
Bst4CI ACNGT 3 cut(s) 13, 297, 345
BstC8I GCNNGC 2 cut(s) 182, 268
BstDEI CTNAG 2 cut(s) 215, 312
BstDSI CCRYGG 1 cut(s) 344
BstF5I GGATG 2 cut(s) 22, 84
BstNSI RCATGY 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 350
BstXI CCANNNNNNTGG 1 cut(s) 332
BtgI CCRYGG 1 cut(s) 344
BtsCI GGATG 2 cut(s) 22, 84
BtsIMutI CAGTG 1 cut(s) 262
Cac8I GCNNGC 2 cut(s) 182, 268
Csp6I GTAC 1 cut(s) 159
CviAII CATG 2 cut(s) 181, 370
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 2 cut(s) 215, 312
DrdI GACNNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 316
Eco57I CTGAAG 2 cut(s) 213, 238
FaeI CATG 2 cut(s) 184, 373
FaiI YATR 4 cut(s) 182, 245, 357, 371
FaqI GGGAC 2 cut(s) 306, 322
FatI CATG 2 cut(s) 180, 369
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 2 cut(s) 29, 91
Fsp4HI GCNGC 1 cut(s) 339
GluI GCNGC 1 cut(s) 339
Hin1II CATG 2 cut(s) 184, 373
HinfI GANTC 3 cut(s) 283, 310, 349
HphI GGTGA 1 cut(s) 161
Hpy188I TCNGA 4 cut(s) 193, 282, 315, 378
Hpy188III TCNNGA 3 cut(s) 104, 206, 238
HpyCH4III ACNGT 3 cut(s) 13, 297, 345
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 166, 305
HpyF3I CTNAG 2 cut(s) 215, 312
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 2 cut(s) 184, 373
LmnI GCTCC 2 cut(s) 47, 335
LpnPI CCDG 6 cut(s) 96, 170, 223, 245, 252, 291
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 1 cut(s) 69
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 2 cut(s) 101, 203
MboII GAAGA 3 cut(s) 104, 134, 206
MluCI AATT 4 cut(s) 5, 21, 60, 110
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 2 cut(s) 19, 25
MnlI CCTC 6 cut(s) 69, 100, 137, 140, 202, 384
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 270
NlaIII CATG 2 cut(s) 184, 373
NmuCI GTSAC 2 cut(s) 101, 203
NspI RCATGY 1 cut(s) 184
PaeI GCATGC 1 cut(s) 184
PctI GAATGC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 283, 349
PkrI GCNGC 1 cut(s) 340
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PstI CTGCAG 1 cut(s) 307
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 1 cut(s) 339
SchI GAGTC 1 cut(s) 304
SetI ASST 2 cut(s) 35, 151
SfaNI GCATC 1 cut(s) 69
SfcI CTRYAG 1 cut(s) 303
SmiMI CAYNNNNRTG 1 cut(s) 330
SphI GCATGC 1 cut(s) 184
Sse9I AATT 4 cut(s) 5, 21, 60, 110
SspI AATATT 1 cut(s) 227
TaaI ACNGT 3 cut(s) 13, 297, 345
TaiI ACGT 1 cut(s) 35
TaqI TCGA 3 cut(s) 74, 176, 365
TasI AATT 4 cut(s) 5, 21, 60, 110
TatI WGTACW 1 cut(s) 158
TfiI GAWTC 2 cut(s) 283, 349
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 2 cut(s) 101, 203
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 2 cut(s) 101, 203
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 262
XapI RAATTY 3 cut(s) 5, 60, 110
XceI RCATGY 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.