Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024184.1

Orthogroup ID

OG0006408

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1138

Gene Structure 1138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024184.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 733 bp

atgccttcgttcggcttctataactcagcttttggtgctccaaagccggtttttgaaaccaaaacaggctctggatggagtccttttggcactaccacaaccccggctttcagcactaccagttgcccggcttttgcaactagtaacccagcttttgactttaccaccttttttcgcgccccggttttcaacactcctagcactccagcttttggcactaattgtaccaccactttggccactacaggtaccccggcttttggcactactagtaccccaactattggcaccacgatcaccataacccctggtgtaggcacttctactgctccaactggtggcactaatgccatcgccataacctctagtgttggcactgctagtactccaactgttggcaatagtatcaccatagccccatctgttggcgctactgtcaccatagccccagctttgggtactagtatcaccataacccaagctgcgggaactactatcaccataaccagcaacccaacttatggtgctacaagcaccccaggcattggtggtgcaagtactccatcctttttctttccaacatccactgctcctacaagcaccccaagcggttttactaattcttttcgctttccaacatccactacttctacttttgcgcaatcaacttgcacctcttgcagcagccaagttggtgcttcatctccttttggaccgcggagacctccatttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

24.25

Weight (kDa)

9.2

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006408)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10290 FvH4_5g10290 FvH4_5g10290 FvH4_5g10290 FvH4_5g10290 FvH4_5g10290 FvH4_5g10290 FvH4_5g10290 FvH4_5g10290 FvH4_5g10290 FvH4_5g10290
malus_domestica	MD06G1125800.v1.1
rosa_chinensis	RchiOBHm_Chr7g0187941
rosa_laevigata	RLG00000004745
rosa_multiflora	Rmu_sc0018017.1_g000003 Rmu_sc0024184.1_g000001
rosa_roxburghii	Rroxscaffold_3G00266920
rosa_rugosa	Rorug06G0485500 Rorug06G0485600 Rorug06G0485700 Rorug06G0485800.1 Rorug06G0485900
rosa_samantha	Rh7AG090700 Rh7BG092300 Rh7CG091500 Rh7DG093100
rosa_wichuraiana	Rw7G007830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	660
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	2 cut(s)	248, 287
AccB7I	CCANNNNNTGG	7 cut(s)	212, 284, 338, 395, 425, 521, 545
AccII	CGCG	2 cut(s)	177, 718
AciI	CCGC	4 cut(s)	485, 609, 716, 718
AcoI	YGGCCR	1 cut(s)	237
AfaI	GTAC	6 cut(s)	226, 250, 274, 385, 460, 559
AgsI	TTSAA	2 cut(s)	56, 190
AhlI	ACTAGT	3 cut(s)	140, 269, 461
AjnI	CCWGG	2 cut(s)	307, 538
AluBI	AGCT	5 cut(s)	29, 152, 209, 452, 482
AluI	AGCT	5 cut(s)	29, 152, 209, 452, 482
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	715
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	3 cut(s)	482, 681, 684
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	3 cut(s)	179, 431, 661
AspS9I	GGNCC	1 cut(s)	713
AsuC2I	CCSGG	4 cut(s)	104, 128, 182, 254
AsuHPI	GGTGA	5 cut(s)	289, 400, 430, 460, 490
AvaII	GGWCC	1 cut(s)	713
BalI	TGGCCA	1 cut(s)	239
BanI	GGYRCC	2 cut(s)	248, 287
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	3 cut(s)	469, 693, 696
BccI	CCATC	4 cut(s)	69, 359, 427, 571
BciT130I	CCWGG	2 cut(s)	309, 540
BcnI	CCSGG	4 cut(s)	104, 128, 182, 254
BcoDI	GTCTC	1 cut(s)	715
BcuI	ACTAGT	3 cut(s)	140, 269, 461
BfaI	CTAG	6 cut(s)	141, 198, 270, 366, 381, 462
BfmI	CTRYAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	432
BisI	GCNGC	3 cut(s)	483, 682, 685
BlsI	GCNGC	3 cut(s)	484, 683, 686
BmcAI	AGTACT	2 cut(s)	385, 559
Bme1390I	CCNGG	6 cut(s)	104, 128, 182, 254, 309, 540
Bme18I	GGWCC	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	713
BmiI	GGNNCC	2 cut(s)	250, 289
BmrFI	CCNGG	6 cut(s)	104, 128, 182, 254, 309, 540
BpmI	CTGGAG	1 cut(s)	189
BpuMI	CCSGG	4 cut(s)	104, 128, 182, 254
BsaI	GGTCTC	1 cut(s)	715
BsaJI	CCNNGG	6 cut(s)	102, 180, 252, 307, 538, 716
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	2 cut(s)	120, 340
BseBI	CCWGG	2 cut(s)	309, 540
BseDI	CCNNGG	6 cut(s)	102, 180, 252, 307, 538, 716
BseGI	GGATG	4 cut(s)	80, 563, 581, 638
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	2 cut(s)	120, 340
BseXI	GCAGC	3 cut(s)	469, 693, 696
BseYI	CCCAGC	2 cut(s)	148, 448
Bsh1236I	CGCG	2 cut(s)	177, 718
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	2 cut(s)	248, 287
BsiHKAI	GWGCWC	1 cut(s)	40
BsiSI	CCGG	5 cut(s)	47, 104, 128, 182, 254
BsmAI	GTCTC	1 cut(s)	715
BsnI	GGCC	1 cut(s)	239
Bso31I	GGTCTC	1 cut(s)	715
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	294
BspACI	CCGC	4 cut(s)	485, 609, 716, 718
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	38
BspFNI	CGCG	2 cut(s)	177, 718
BspLI	GGNNCC	2 cut(s)	250, 289
BspT107I	GGYRCC	2 cut(s)	248, 287
BspTNI	GGTCTC	1 cut(s)	715
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	120, 340
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	6 cut(s)	102, 180, 252, 307, 538, 716
BssMI	GATC	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	309, 540
Bst4CI	ACNGT	2 cut(s)	394, 436
BstAPI	GCANNNNNTGC	1 cut(s)	678
BstDEI	CTNAG	1 cut(s)	25
BstDSI	CCRYGG	1 cut(s)	716
BstENI	CCTNNNNNAGG	1 cut(s)	312
BstF5I	GGATG	4 cut(s)	80, 563, 581, 638
BstFNI	CGCG	2 cut(s)	177, 718
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	3 cut(s)	179, 431, 661
BstKTI	GATC	1 cut(s)	297
BstMAI	GTCTC	1 cut(s)	715
BstMBI	GATC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 540, 606, 678
BstNI	CCWGG	2 cut(s)	309, 540
BstSCI	CCNGG	6 cut(s)	102, 126, 180, 252, 307, 538
BstSFI	CTRYAG	1 cut(s)	243
BstUI	CGCG	2 cut(s)	177, 718
BstV1I	GCAGC	3 cut(s)	469, 693, 696
BstXI	CCANNNNNNTGG	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	716
BtgZI	GCGATG	1 cut(s)	337
BtsCI	GGATG	4 cut(s)	80, 563, 581, 638
BtsI	GCAGTG	2 cut(s)	375, 585
BtsIMutI	CAGTG	2 cut(s)	375, 585
CaiI	CAGNNNCTG	1 cut(s)	71
CfoI	GCGC	3 cut(s)	179, 431, 661
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	713
Cfr42I	CCGCGG	1 cut(s)	719
Csp6I	GTAC	6 cut(s)	225, 249, 273, 384, 459, 558
CviQI	GTAC	6 cut(s)	225, 249, 273, 384, 459, 558
DdeI	CTNAG	1 cut(s)	25
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	715
Eco47I	GGWCC	1 cut(s)	713
EcoNI	CCTNNNNNAGG	1 cut(s)	312
EcoRII	CCWGG	2 cut(s)	307, 538
FaiI	YATR	8 cut(s)	21, 302, 359, 413, 443, 473, 503, 522
FauI	CCCGC	1 cut(s)	478
Fnu4HI	GCNGC	3 cut(s)	483, 682, 685
FokI	GGATG	4 cut(s)	87, 550, 568, 625
Fsp4HI	GCNGC	3 cut(s)	483, 682, 685
FspBI	CTAG	6 cut(s)	141, 198, 270, 366, 381, 462
FspI	TGCGCA	1 cut(s)	660
GlaI	GCGC	3 cut(s)	178, 430, 660
GluI	GCNGC	3 cut(s)	483, 682, 685
GsaI	CCCAGC	2 cut(s)	152, 452
GsuI	CTGGAG	1 cut(s)	189
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	5 cut(s)	47, 104, 128, 182, 254
HhaI	GCGC	3 cut(s)	179, 431, 661
Hin6I	GCGC	3 cut(s)	177, 429, 659
HinP1I	GCGC	3 cut(s)	177, 429, 659
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	5 cut(s)	47, 104, 128, 182, 254
HphI	GGTGA	5 cut(s)	289, 400, 430, 460, 490
Hpy188III	TCNNGA	1 cut(s)	72
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	2 cut(s)	394, 436
HpyCH4V	TGCA	4 cut(s)	137, 554, 672, 681
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 540, 606, 678
HpyF3I	CTNAG	1 cut(s)	25
HspAI	GCGC	3 cut(s)	177, 429, 659
KpnI	GGTACC	1 cut(s)	252
KspI	CCGCGG	1 cut(s)	719
Kzo9I	GATC	1 cut(s)	294
LmnI	GCTCC	3 cut(s)	43, 334, 595
Lsp1109I	GCAGC	3 cut(s)	469, 693, 696
MaeI	CTAG	6 cut(s)	141, 198, 270, 366, 381, 462
MaeIII	GTNAC	2 cut(s)	143, 436
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	2 cut(s)	220, 619
MluNI	TGGCCA	1 cut(s)	239
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	4 cut(s)	356, 413, 602, 659
MnlI	CCTC	2 cut(s)	373, 685
Mox20I	TGGCCA	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	239
Msp20I	TGGCCA	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	718
MspI	CCGG	5 cut(s)	47, 104, 128, 182, 254
MspR9I	CCNGG	6 cut(s)	104, 128, 182, 254, 309, 540
MvaI	CCWGG	2 cut(s)	309, 540
MvnI	CGCG	2 cut(s)	177, 718
MwoI	GCNNNNNNNGC	4 cut(s)	35, 540, 606, 678
NciI	CCSGG	4 cut(s)	104, 128, 182, 254
NdeII	GATC	1 cut(s)	294
NlaIV	GGNNCC	2 cut(s)	250, 289
NmuCI	GTSAC	1 cut(s)	436
NsbI	TGCGCA	1 cut(s)	660
PflMI	CCANNNNNTGG	7 cut(s)	212, 284, 338, 395, 425, 521, 545
PkrI	GCNGC	3 cut(s)	484, 683, 686
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	307, 538
PspFI	CCCAGC	2 cut(s)	148, 448
PspGI	CCWGG	2 cut(s)	307, 538
PspN4I	GGNNCC	2 cut(s)	250, 289
PspPI	GGNCC	1 cut(s)	713
PstNI	CAGNNNCTG	1 cut(s)	71
RsaI	GTAC	6 cut(s)	226, 250, 274, 385, 460, 559
RsaNI	GTAC	6 cut(s)	225, 249, 273, 384, 459, 558
SacII	CCGCGG	1 cut(s)	719
SatI	GCNGC	3 cut(s)	483, 682, 685
Sau3AI	GATC	1 cut(s)	294
Sau96I	GGNCC	1 cut(s)	713
ScaI	AGTACT	2 cut(s)	385, 559
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	6 cut(s)	104, 128, 182, 254, 309, 540
SduI	GDGCHC	1 cut(s)	40
SfcI	CTRYAG	1 cut(s)	243
Sfr303I	CCGCGG	1 cut(s)	719
SgrBI	CCGCGG	1 cut(s)	719
SinI	GGWCC	1 cut(s)	713
SpeI	ACTAGT	3 cut(s)	140, 269, 461
Sse9I	AATT	2 cut(s)	220, 619
SsiI	CCGC	4 cut(s)	485, 609, 716, 718
SspMI	CTAG	6 cut(s)	141, 198, 270, 366, 381, 462
StyD4I	CCNGG	6 cut(s)	102, 126, 180, 252, 307, 538
TaaI	ACNGT	2 cut(s)	394, 436
TasI	AATT	2 cut(s)	220, 619
TatI	WGTACW	2 cut(s)	383, 557
TscAI	CASTG	2 cut(s)	382, 592
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	3 cut(s)	482, 681, 684
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	690
TspRI	CASTG	2 cut(s)	382, 592
Van91I	CCANNNNNTGG	7 cut(s)	212, 284, 338, 395, 425, 521, 545
VpaK11BI	GGWCC	1 cut(s)	713
XagI	CCTNNNNNAGG	1 cut(s)	312
XspI	CTAG	6 cut(s)	141, 198, 270, 366, 381, 462
ZrmI	AGTACT	2 cut(s)	385, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.