Rorug06G0485500

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000665
Physical Location & Seq
Reverse (-)
60500645 .. 60503910
3266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0485500.1

Sequence Viewer

Length: 906 bp
ATGGTGTTTGGGCAAGTTGTGATCGGTCCACCTGGCTCAGGGAAGACCACTTACTGCAACGGCATGTCGCAATTCCTCGAACTCATTGGAAGGAAAGTTGCGGTTATCAATTTGGACCCGGCTAACGATTCATTACCGTGTGAATGTGCTGTGAACATAGCTGATCTTGTAAAACTAAGTGATGTCATGGCGGAACATTCTCTTGGTCCAAATGGAGGTCTGGTATATTGCATGGATTATCTAGAGAAAAATATTGACTGGTTGGAGGCTAAGTTGAAACCTCTTCTTAAAGATCACTATCTTCTCTTTGATTTTCCCGGCCAAGTGGAACTATTCTTTCTTTATTCCAACGCCAAGAATATTATCATGAAACTCATAAAGAAGTTAAACCTCAGGTTGGCTGCAGTGCATTTAGTTGACGCCCATCTTTGCAGTGATCCTGCGAAGTATGTTAGTGCATTGCTTCTCTCTTTATCAACCATGATCCATATGGAGCTCCCACACATAAATGTCTTGTCTAAGATTGATTTGATACAGAACTATGGAAAGCTAGCTTTCAACCTTGATTTCTATACTGATGTGGAGGATTTATCTTATCTTCAGAACAGTCTTGATCAGGATCCTCGCTTAGCTAAATTCAGAAAGCTTACCAAGGAGCTCTGTGGTGTCATAGAAGACTACAGTCTTGTCAGCTTTACAACCTTAGATATTCAGGATAAAGAGAGCGTGGGGAAACTAGTTAAGCTGATAGACAAGACCAATGGATATATTTTTGCTAGCATTGAAGCAAGTGCAGTAGAATTCAGCAAAATTGCAGTTGGTCCTGTTGATTGGGATTACCACAGAGTTGGAGAAGTGCAAGAGAAGTACATCAAGTTTGATGAAGACTGTGATGACAATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902446 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2000030 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2

Protein Analysis

301

Amino Acids

33.81

Weight (kDa)

4.93

Isoelectric Point (pI)

26.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP_bind_1 PF03029 7 - 255 3e-77 Conserved hypothetical ATP binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000665)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 101, 191
AclWI GGATC 4 cut(s) 431, 478, 614, 627
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 2 cut(s) 635, 800
AcuI CTGAAG 1 cut(s) 584
AcyI GRCGYC 1 cut(s) 420
AfaI GTAC 1 cut(s) 869
AfiI CCNNNNNNNGG 3 cut(s) 38, 215, 397
AgsI TTSAA 3 cut(s) 277, 559, 785
AhlI ACTAGT 1 cut(s) 736
AjnI CCWGG 1 cut(s) 31
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 9 cut(s) 161, 496, 550, 554, 632, 646, 658, 693, 745
AluI AGCT 9 cut(s) 161, 496, 550, 554, 632, 646, 658, 693, 745
Alw21I GWGCWC 2 cut(s) 498, 660
AlwI GGATC 4 cut(s) 431, 478, 614, 627
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 2 cut(s) 635, 800
AspS9I GGNCC 4 cut(s) 26, 115, 206, 821
AsuC2I CCSGG 2 cut(s) 119, 318
AsuNHI GCTAGC 2 cut(s) 550, 776
AvaII GGWCC 4 cut(s) 26, 115, 206, 821
AxyI CCTNAGG 1 cut(s) 392
BamHI GGATCC 1 cut(s) 619
BanII GRGCYC 2 cut(s) 498, 660
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
BbsI GAAGAC 3 cut(s) 50, 681, 891
Bbv12I GWGCWC 2 cut(s) 498, 660
BbvI GCAGC 1 cut(s) 388
BccI CCATC 1 cut(s) 432
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 33
BclI TGATCA 1 cut(s) 613
BcnI CCSGG 2 cut(s) 119, 318
BcuI ACTAGT 1 cut(s) 736
BfaI CTAG 4 cut(s) 242, 551, 737, 777
BfmI CTRYAG 2 cut(s) 402, 679
BisI GCNGC 1 cut(s) 402
BlpI GCTNAGC 1 cut(s) 628
BlsI GCNGC 1 cut(s) 403
Bme1390I CCNGG 3 cut(s) 33, 119, 318
Bme18I GGWCC 4 cut(s) 26, 115, 206, 821
BmgT120I GGNCC 4 cut(s) 26, 115, 206, 821
BmiI GGNNCC 2 cut(s) 117, 621
BmrFI CCNGG 3 cut(s) 33, 119, 318
BmtI GCTAGC 2 cut(s) 554, 780
BoxI GACNNNNGTC 1 cut(s) 681
BpiI GAAGAC 3 cut(s) 50, 681, 891
Bpu10I CCTNAGC 1 cut(s) 37
Bpu1102I GCTNAGC 1 cut(s) 628
BpuMI CCSGG 2 cut(s) 119, 318
BsaBI GATNNNNATC 2 cut(s) 297, 618
BsaHI GRCGYC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 651
BsaXI ACNNNNNCTCC 4 cut(s) 207, 237, 257, 287
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 215, 397
Bse1I ACTGG 1 cut(s) 263
Bse21I CCTNAGG 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 458
Bse8I GATNNNNATC 2 cut(s) 297, 618
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 651
BseJI GATNNNNATC 2 cut(s) 297, 618
BseLI CCNNNNNNNGG 3 cut(s) 38, 215, 397
BseMI GCAATG 1 cut(s) 458
BseMII CTCAG 2 cut(s) 51, 406
BseNI ACTGG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 388
BsgI GTGCAG 1 cut(s) 813
BshFI GGCC 1 cut(s) 321
BsiHKAI GWGCWC 2 cut(s) 498, 660
BsiSI CCGG 2 cut(s) 119, 318
BslI CCNNNNNNNGG 3 cut(s) 38, 215, 397
BsnI GGCC 1 cut(s) 321
Bsp1286I GDGCHC 2 cut(s) 498, 660
Bsp143I GATC 7 cut(s) 21, 163, 292, 436, 483, 613, 619
Bsp1720I GCTNAGC 1 cut(s) 628
BspACI CCGC 2 cut(s) 101, 191
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 2 cut(s) 50, 405
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 2 cut(s) 117, 621
BspMAI CTGCAG 1 cut(s) 406
BspOI GCTAGC 2 cut(s) 554, 780
BspPI GGATC 4 cut(s) 431, 478, 614, 627
BsrDI GCAATG 1 cut(s) 458
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 651
BssMI GATC 7 cut(s) 21, 163, 292, 436, 483, 613, 619
BssNI GRCGYC 1 cut(s) 420
BssT1I CCWWGG 1 cut(s) 651
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 4 cut(s) 138, 608, 683, 890
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 1 cut(s) 420
BstC8I GCNNGC 2 cut(s) 552, 778
BstDEI CTNAG 7 cut(s) 37, 176, 270, 392, 519, 628, 703
BstENI CCTNNNNNAGG 1 cut(s) 36
BstKTI GATC 7 cut(s) 24, 166, 295, 439, 486, 616, 622
BstMBI GATC 7 cut(s) 21, 163, 292, 436, 483, 613, 619
BstNI CCWGG 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 67
BstPAI GACNNNNGTC 1 cut(s) 681
BstSCI CCNGG 3 cut(s) 31, 117, 316
BstSFI CTRYAG 2 cut(s) 402, 679
BstV1I GCAGC 1 cut(s) 388
BstV2I GAAGAC 3 cut(s) 50, 681, 891
BstX2I RGATCY 1 cut(s) 619
BstXI CCANNNNNNTGG 1 cut(s) 848
BstYI RGATCY 1 cut(s) 619
Bsu36I CCTNAGG 1 cut(s) 392
BsuRI GGCC 1 cut(s) 321
BtsI GCAGTG 2 cut(s) 411, 439
BtsIMutI CAGTG 2 cut(s) 411, 439
Cac8I GCNNGC 2 cut(s) 552, 778
CciI TCATGA 1 cut(s) 366
Cfr13I GGNCC 4 cut(s) 26, 115, 206, 821
CseI GACGC 1 cut(s) 428
Csp6I GTAC 1 cut(s) 868
CviAII CATG 5 cut(s) 64, 187, 232, 367, 481
CviQI GTAC 1 cut(s) 868
DdeI CTNAG 7 cut(s) 37, 176, 270, 392, 519, 628, 703
DpnI GATC 7 cut(s) 23, 165, 294, 438, 485, 615, 621
DpnII GATC 7 cut(s) 21, 163, 292, 436, 483, 613, 619
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
EciI GGCGGA 1 cut(s) 206
Ecl136II GAGCTC 2 cut(s) 496, 658
Eco130I CCWWGG 1 cut(s) 651
Eco24I GRGCYC 2 cut(s) 498, 660
Eco47I GGWCC 4 cut(s) 26, 115, 206, 821
Eco53kI GAGCTC 2 cut(s) 496, 658
Eco57I CTGAAG 1 cut(s) 584
Eco81I CCTNAGG 1 cut(s) 392
EcoICRI GAGCTC 2 cut(s) 496, 658
EcoNI CCTNNNNNAGG 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 800
EcoRII CCWGG 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 651
EcoT38I GRGCYC 2 cut(s) 498, 660
ErhI CCWWGG 1 cut(s) 651
FaeI CATG 5 cut(s) 67, 190, 235, 370, 484
FatI CATG 5 cut(s) 63, 186, 231, 366, 480
FauNDI CATATG 1 cut(s) 489
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 1 cut(s) 402
FriOI GRGCYC 2 cut(s) 498, 660
Fsp4HI GCNGC 1 cut(s) 402
FspBI CTAG 4 cut(s) 242, 551, 737, 777
GluI GCNGC 1 cut(s) 402
HaeIII GGCC 1 cut(s) 321
HapII CCGG 2 cut(s) 119, 318
HgaI GACGC 1 cut(s) 428
Hin1I GRCGYC 1 cut(s) 420
Hin1II CATG 5 cut(s) 67, 190, 235, 370, 484
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 1 cut(s) 128
HpaII CCGG 2 cut(s) 119, 318
Hpy166II GTNNAC 3 cut(s) 29, 154, 418
Hpy188I TCNGA 2 cut(s) 603, 641
Hpy188III TCNNGA 5 cut(s) 242, 367, 611, 617, 713
Hpy8I GTNNAC 3 cut(s) 29, 154, 418
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 4 cut(s) 138, 608, 683, 890
HpyCH4V TGCA 9 cut(s) 57, 231, 404, 409, 432, 458, 794, 815, 859
HpyF3I CTNAG 7 cut(s) 37, 176, 270, 392, 519, 628, 703
Hsp92I GRCGYC 1 cut(s) 420
Hsp92II CATG 5 cut(s) 67, 190, 235, 370, 484
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 7 cut(s) 21, 163, 292, 436, 483, 613, 619
LmnI GCTCC 3 cut(s) 493, 501, 655
Lsp1109I GCAGC 1 cut(s) 388
MaeI CTAG 4 cut(s) 242, 551, 737, 777
MalI GATC 7 cut(s) 23, 165, 294, 438, 485, 615, 621
MboI GATC 7 cut(s) 21, 163, 292, 436, 483, 613, 619
MboII GAAGA 6 cut(s) 55, 275, 293, 590, 686, 896
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 2 cut(s) 498, 660
MluCI AATT 5 cut(s) 71, 109, 635, 800, 810
MmeI TCCRAC 3 cut(s) 243, 372, 829
MnlI CCTC 7 cut(s) 86, 209, 259, 291, 401, 577, 633
MseI TTAA 3 cut(s) 288, 386, 741
MslI CAYNNNNRTG 2 cut(s) 136, 507
MspI CCGG 2 cut(s) 119, 318
MspR9I CCNGG 3 cut(s) 33, 119, 318
MvaI CCWGG 1 cut(s) 33
NciI CCSGG 2 cut(s) 119, 318
NdeI CATATG 1 cut(s) 489
NdeII GATC 7 cut(s) 21, 163, 292, 436, 483, 613, 619
NheI GCTAGC 2 cut(s) 550, 776
NlaIII CATG 5 cut(s) 67, 190, 235, 370, 484
NlaIV GGNNCC 2 cut(s) 117, 621
NspI RCATGY 1 cut(s) 67
PagI TCATGA 1 cut(s) 366
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 403
PshAI GACNNNNGTC 1 cut(s) 681
Psp124BI GAGCTC 2 cut(s) 498, 660
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 117, 621
PspPI GGNCC 4 cut(s) 26, 115, 206, 821
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 619
RsaI GTAC 1 cut(s) 869
RsaNI GTAC 1 cut(s) 868
RseI CAYNNNNRTG 2 cut(s) 136, 507
SacI GAGCTC 2 cut(s) 498, 660
SaqAI TTAA 3 cut(s) 288, 386, 741
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 7 cut(s) 21, 163, 292, 436, 483, 613, 619
Sau96I GGNCC 4 cut(s) 26, 115, 206, 821
ScrFI CCNGG 3 cut(s) 33, 119, 318
SduI GDGCHC 2 cut(s) 498, 660
SfcI CTRYAG 2 cut(s) 402, 679
SinI GGWCC 4 cut(s) 26, 115, 206, 821
SmiMI CAYNNNNRTG 2 cut(s) 136, 507
SpeI ACTAGT 1 cut(s) 736
Sse9I AATT 5 cut(s) 71, 109, 635, 800, 810
SsiI CCGC 2 cut(s) 101, 191
SspI AATATT 2 cut(s) 253, 361
SspMI CTAG 4 cut(s) 242, 551, 737, 777
SstI GAGCTC 2 cut(s) 498, 660
StyD4I CCNGG 3 cut(s) 31, 117, 316
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 4 cut(s) 138, 608, 683, 890
TaqI TCGA 1 cut(s) 78
TaqII GACCGA 1 cut(s) 14
TasI AATT 5 cut(s) 71, 109, 635, 800, 810
TatI WGTACW 1 cut(s) 867
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 3 cut(s) 288, 386, 741
Tru9I TTAA 3 cut(s) 288, 386, 741
TscAI CASTG 2 cut(s) 411, 439
TseI GCWGC 1 cut(s) 401
TspDTI ATGAA 3 cut(s) 120, 383, 897
TspRI CASTG 2 cut(s) 411, 439
VpaK11BI GGWCC 4 cut(s) 26, 115, 206, 821
XagI CCTNNNNNAGG 1 cut(s) 36
XapI RAATTY 2 cut(s) 635, 800
XbaI TCTAGA 1 cut(s) 241
XceI RCATGY 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XspI CTAG 4 cut(s) 242, 551, 737, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.