Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000665

Physical Location & Seq

Genomic Coordinates Reverse (-)

54008033 .. 54010486

Gene Structure 2454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G026750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGTGAATTGGTATGGACAATGGAAGCCAGTGGTTGTTATGATTGGCATCAACCTTGCTTTGGCCATAGTCAACGTGCTTCTTAAATTAACTCTGGATAAAGGAGTAAAAAGTAGACATGAACTTACAGATCCACTCATATGCCACCTTTTTTTCAGTGCTCTAATTGGGGTAACATTCGCACAATACATGTTTCTTCTTGGACTCCAGTACACCTCAGCTACATATTCTTCTGCCTTCATCAACATGGCGCCTGTTAACACTACCATTTGGAGAGTGAGCATTAGGAGCAAGGGAGGCAGAGCTAAGATATTGAGTGCTTTGATATGCATTGGTGGAGCTTTGTCATTGACCTTATACAAAGGAATGCCACTGACCAACCAACACTCACATGCCACAGCTGAAATTGAAAACCATGACTATATACTGATGTTTTTGGCAGCAGGTTGCATGTTGTGGGCTTCATGGTTTCTCATACAAGCCAAGATTGGGAAGAGCTACCCATTTCAGTACTCTAGCACAGCCATCTTGTCCTTCTTTGGTGTCATTCAGTCAGCCATCTTGACCTTGCTTACTGAGAGAAGCATCAACATGTCAATGTGGGTTTTGAAGGGGAAGTTGGAAATACTGAGTGTCACATATGCTTGTGTGAAGCAAAAGGGTCCATTGTTTACATCAGCATTCACTCCCTTAATCCAGATATTTGTGGCTATGTTTGACTGCTTAACCTTGCATGAACAGATCTATTGTGGTCATTATGTCCTAGTCATAGTGGGAATGTATGTTCTACTGTGGGGGAAAAGCAATGATGCAAAGGAAATTGTGGTGAAGCAGACACTGCAGCTGAAGAAGGTGTATATGTCCCTTGATACGGATTTGAACAAACCTGTTGTTAATCCAAACCTAACTCACCAACAGCCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

308

Amino Acids

34.46

Weight (kDa)

9.28

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	17 - 117	2.1e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca	FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica	MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica	Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis	pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis	RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata	RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora	Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii	Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa	Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha	Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana	Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	115
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	866
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	2 cut(s)	212, 512
AfiI	CCNNNNNNNGG	3 cut(s)	61, 489, 871
AflIII	ACRYGT	2 cut(s)	189, 591
AgsI	TTSAA	3 cut(s)	410, 610, 880
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AloI	GAACNNNNNNTCC	2 cut(s)	768, 800
AluBI	AGCT	6 cut(s)	221, 305, 341, 401, 498, 844
AluI	AGCT	6 cut(s)	221, 305, 341, 401, 498, 844
Alw21I	GWGCWC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	838
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	2 cut(s)	440, 841
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	662
AsuHPI	GGTGA	3 cut(s)	16, 838, 902
AvaII	GGWCC	1 cut(s)	662
BalI	TGGCCA	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	163
BbvCI	CCTCAGC	1 cut(s)	217
BbvI	GCAGC	2 cut(s)	452, 853
BccI	CCATC	2 cut(s)	533, 566
BfaI	CTAG	2 cut(s)	516, 764
BfmI	CTRYAG	1 cut(s)	839
BfoI	RGCGCY	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	434
BglII	AGATCT	1 cut(s)	741
BisI	GCNGC	2 cut(s)	441, 842
BlsI	GCNGC	2 cut(s)	442, 843
BmcAI	AGTACT	1 cut(s)	512
Bme18I	GGWCC	1 cut(s)	662
BmgT120I	GGNCC	1 cut(s)	662
BmiI	GGNNCC	2 cut(s)	252, 663
BmsI	GCATC	3 cut(s)	57, 594, 799
BpmI	CTGGAG	1 cut(s)	191
Bpu10I	CCTNAGC	1 cut(s)	217
BsaBI	GATNNNNATC	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 489, 871
Bse1I	ACTGG	2 cut(s)	29, 208
Bse3DI	GCAATG	1 cut(s)	811
Bse8I	GATNNNNATC	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	3 cut(s)	61, 489, 871
BseMI	GCAATG	1 cut(s)	811
BseMII	CTCAG	3 cut(s)	231, 567, 620
BseNI	ACTGG	2 cut(s)	29, 208
BseXI	GCAGC	2 cut(s)	452, 853
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	847
BslI	CCNNNNNNNGG	3 cut(s)	61, 489, 871
BsmFI	GGGAC	1 cut(s)	847
BsmI	GAATGC	2 cut(s)	372, 680
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	130, 741
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	3 cut(s)	230, 568, 621
BspLI	GGNNCC	2 cut(s)	252, 663
BspMAI	CTGCAG	1 cut(s)	843
BspMI	ACCTGC	1 cut(s)	434
BspPI	GGATC	1 cut(s)	125
BspQI	GCTCTTC	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	811
BsrI	ACTGG	2 cut(s)	29, 208
BssMI	GATC	2 cut(s)	130, 741
BssNI	GRCGYC	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	792
Bst6I	CTCTTC	1 cut(s)	488
BstACI	GRCGYC	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	838
BstDEI	CTNAG	4 cut(s)	217, 306, 576, 629
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	2 cut(s)	133, 744
BstMBI	GATC	2 cut(s)	130, 741
BstMWI	GCNNNNNNNGC	3 cut(s)	288, 297, 838
BstNSI	RCATGY	4 cut(s)	193, 395, 454, 595
BstSFI	CTRYAG	1 cut(s)	839
BstV1I	GCAGC	2 cut(s)	452, 853
BstX2I	RGATCY	2 cut(s)	130, 741
BstYI	RGATCY	2 cut(s)	130, 741
BsuRI	GGCC	1 cut(s)	65
BtsI	GCAGTG	1 cut(s)	836
BtsIMutI	CAGTG	4 cut(s)	36, 163, 371, 836
BveI	ACCTGC	1 cut(s)	434
CaiI	CAGNNNCTG	1 cut(s)	838
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	662
Csp6I	GTAC	2 cut(s)	211, 511
CviAII	CATG	9 cut(s)	119, 190, 247, 392, 416, 451, 465, 592, 734
CviQI	GTAC	2 cut(s)	211, 511
DdeI	CTNAG	4 cut(s)	217, 306, 576, 629
DinI	GGCGCC	1 cut(s)	252
DpnI	GATC	2 cut(s)	132, 743
DpnII	GATC	2 cut(s)	130, 741
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	662
Eco57I	CTGAAG	1 cut(s)	866
EcoT22I	ATGCAT	1 cut(s)	332
EgeI	GGCGCC	1 cut(s)	252
EheI	GGCGCC	1 cut(s)	252
FaeI	CATG	9 cut(s)	122, 193, 250, 395, 419, 454, 468, 595, 737
FaqI	GGGAC	1 cut(s)	847
FatI	CATG	9 cut(s)	118, 189, 246, 391, 415, 450, 464, 591, 733
FauNDI	CATATG	2 cut(s)	140, 640
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	441, 842
Fsp4HI	GCNGC	2 cut(s)	441, 842
FspBI	CTAG	2 cut(s)	516, 764
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	2 cut(s)	441, 842
GsuI	CTGGAG	1 cut(s)	191
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	9 cut(s)	122, 193, 250, 395, 419, 454, 468, 595, 737
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	2 cut(s)	73, 259
HindII	GTYRAC	2 cut(s)	73, 259
HinfI	GANTC	1 cut(s)	204
HpaI	GTTAAC	1 cut(s)	259
HphI	GGTGA	3 cut(s)	16, 838, 902
Hpy166II	GTNNAC	5 cut(s)	73, 116, 213, 259, 672
Hpy188III	TCNNGA	3 cut(s)	95, 562, 697
Hpy8I	GTNNAC	5 cut(s)	73, 116, 213, 259, 672
HpyAV	CCTTC	4 cut(s)	247, 544, 604, 844
HpyCH4III	ACNGT	1 cut(s)	792
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	5 cut(s)	330, 450, 733, 812, 841
HpyF10VI	GCNNNNNNNGC	3 cut(s)	288, 297, 838
HpyF3I	CTNAG	4 cut(s)	217, 306, 576, 629
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	9 cut(s)	122, 193, 250, 395, 419, 454, 468, 595, 737
HspAI	GCGC	1 cut(s)	251
KasI	GGCGCC	1 cut(s)	250
KspAI	GTTAAC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	130, 741
LguI	GCTCTTC	1 cut(s)	488
LmnI	GCTCC	2 cut(s)	288, 338
LpnPI	CCDG	7 cut(s)	42, 80, 221, 267, 429, 710, 900
Lsp1109I	GCAGC	2 cut(s)	452, 853
LweI	GCATC	3 cut(s)	57, 594, 799
MaeI	CTAG	2 cut(s)	516, 764
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	172, 634
MalI	GATC	2 cut(s)	132, 743
MboI	GATC	2 cut(s)	130, 741
MboII	GAAGA	4 cut(s)	188, 222, 505, 859
MflI	RGATCY	2 cut(s)	130, 741
MhlI	GDGCHC	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	5 cut(s)	7, 86, 165, 405, 819
MluNI	TGGCCA	1 cut(s)	65
Mly113I	GGCGCC	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	600
MnlI	CCTC	2 cut(s)	226, 290
Mox20I	TGGCCA	1 cut(s)	65
Mph1103I	ATGCAT	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	7 cut(s)	84, 89, 258, 692, 725, 894, 925
MslI	CAYNNNNRTG	5 cut(s)	139, 245, 390, 590, 596
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	2 cut(s)	401, 844
Mva1269I	GAATGC	2 cut(s)	372, 680
MwoI	GCNNNNNNNGC	3 cut(s)	288, 297, 838
NarI	GGCGCC	1 cut(s)	251
NdeI	CATATG	2 cut(s)	140, 640
NdeII	GATC	2 cut(s)	130, 741
NlaIII	CATG	9 cut(s)	122, 193, 250, 395, 419, 454, 468, 595, 737
NlaIV	GGNNCC	2 cut(s)	252, 663
NmuCI	GTSAC	1 cut(s)	634
NsiI	ATGCAT	1 cut(s)	332
NspI	RCATGY	4 cut(s)	193, 395, 454, 595
PciI	ACATGT	2 cut(s)	189, 591
PciSI	GCTCTTC	1 cut(s)	488
PctI	GAATGC	2 cut(s)	372, 680
PkrI	GCNGC	2 cut(s)	442, 843
PleI	GAGTC	1 cut(s)	198
PluTI	GGCGCC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	198
PscI	ACATGT	2 cut(s)	189, 591
PspN4I	GGNNCC	2 cut(s)	252, 663
PspPI	GGNCC	1 cut(s)	662
PstI	CTGCAG	1 cut(s)	843
PstNI	CAGNNNCTG	1 cut(s)	838
PsuI	RGATCY	2 cut(s)	130, 741
PvuII	CAGCTG	2 cut(s)	401, 844
RsaI	GTAC	2 cut(s)	212, 512
RsaNI	GTAC	2 cut(s)	211, 511
RseI	CAYNNNNRTG	5 cut(s)	139, 245, 390, 590, 596
SapI	GCTCTTC	1 cut(s)	488
SaqAI	TTAA	7 cut(s)	84, 89, 258, 692, 725, 894, 925
SatI	GCNGC	2 cut(s)	441, 842
Sau3AI	GATC	2 cut(s)	130, 741
Sau96I	GGNCC	1 cut(s)	662
ScaI	AGTACT	1 cut(s)	512
SchI	GAGTC	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	163
SfaNI	GCATC	3 cut(s)	57, 594, 799
SfcI	CTRYAG	1 cut(s)	839
SfoI	GGCGCC	1 cut(s)	252
SinI	GGWCC	1 cut(s)	662
SmiMI	CAYNNNNRTG	5 cut(s)	139, 245, 390, 590, 596
Sse9I	AATT	5 cut(s)	7, 86, 165, 405, 819
SspDI	GGCGCC	1 cut(s)	250
SspMI	CTAG	2 cut(s)	516, 764
TaaI	ACNGT	1 cut(s)	792
TaiI	ACGT	1 cut(s)	78
TasI	AATT	5 cut(s)	7, 86, 165, 405, 819
TatI	WGTACW	2 cut(s)	210, 510
Tru1I	TTAA	7 cut(s)	84, 89, 258, 692, 725, 894, 925
Tru9I	TTAA	7 cut(s)	84, 89, 258, 692, 725, 894, 925
TscAI	CASTG	4 cut(s)	36, 163, 378, 843
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	2 cut(s)	440, 841
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	4 cut(s)	135, 229, 453, 750
TspGWI	ACGGA	1 cut(s)	887
TspRI	CASTG	4 cut(s)	36, 163, 378, 843
VpaK11BI	GGWCC	1 cut(s)	662
XceI	RCATGY	4 cut(s)	193, 395, 454, 595
XmiI	GTMKAC	1 cut(s)	115
XspI	CTAG	2 cut(s)	516, 764
ZrmI	AGTACT	1 cut(s)	512
Zsp2I	ATGCAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.