Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000665

Physical Location & Seq

Genomic Coordinates Reverse (-)

15234196 .. 15241785

Gene Structure 7590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18160.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGTGAATTGTTATGGACAATGGAAGCCAGTGATTGCCATGATCGGTGTCAATCTTGCTTTGGCCATAGTCAATGTGCTTCTTAAGTTAACTCTGGATAAAGGAGTGCACAATCTGGTTGTAGTTACTTACAGGCAGTCCATTTCTTGTGTCTTCTTGACACCCATTGCCTTCTTTTGTGAAAGAAAAAGTAGGCCTGAACTTACAGCTCGCCTAATATGCAACTTGTTCTTCAGTGCTCTAATTGGGGTAACATTCACACAATACTTATTTCTTCTTGGACTCCAATACACCTCGGCAACATATGCTTGTGCCTTCATCAACATGGTGCCTGTATACACTTTCCTATTGGCACTACCATTTGGTCTAGAGAAAGTAAGCATTAGGAGCAAGGGAGGGATAGCCAAGATCTTGGGTTCTATAATATGCATTGGTGGAGCTTTGTCATTGACCTTATACAAGGGAATGCCACTGACCAACCAACACACACATGCTACAGCTGAAATTGGAAACCATGATTATATGATGAGTGCTGCAAAGAAGAGAGAGAGGTGGGCACTTGGTTCAGTACTTTTAGCAGCAGGTTGCCTCTTGTGGGCTTCATGGTTCCTCATACAAGCCAAGATTGGGAAGAGCTATCCATTTCAGTACTCTAGCACAGCCATCTTGTCCTTCTTTGGTGCCATTCAGTCAGCCATCTTGATCTTGCTTACTGAGAGAAGCATCAACATGTCAATGTGGGTTTTGAAGGGGAATTTGGAAATATTAAGCGTCACATATGCTGGAGCAGTTGGATCAGGGTTGTGCTATGTAGGCATGTCATGGTGTGTGAAGCAAAAGGGTCCATTGTTTACATCAGCATTTACTCCCTTAATCCAGATATTCGTGGCTATGCTCGACTTCTCAACCTTGCATGAACAATTCTATCTTGGAAGTTTGGTGGGATCTGTCCTAGTCATAGTGGGAATGTATGTTCTACTGTGGGGGAAAAGCAATGATGCAAAGGAAATTGGGATGAAGCAAACACAAGCAAATGAAGAAGCTGCAGATGTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

353

Amino Acids

38.56

Weight (kDa)

9.13

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	10 - 144	5.1e-13	EamA-like transporter family
EamA	PF00892	187 - 327	1.4e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca	FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica	MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica	Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis	pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis	RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata	RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora	Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii	Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa	Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha	Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana	Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	572
AccB1I	GGYRCC	2 cut(s)	328, 680
AccI	GTMKAC	1 cut(s)	336
AclWI	GGATC	2 cut(s)	802, 952
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	754
AcuI	CTGAAG	1 cut(s)	217
AfaI	GTAC	2 cut(s)	570, 650
AfiI	CCNNNNNNNGG	2 cut(s)	595, 627
AflII	CTTAAG	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	1 cut(s)	748
AjuI	GAANNNNNNNTTGG	2 cut(s)	740, 772
AloI	GAACNNNNNNTCC	2 cut(s)	957, 989
AluBI	AGCT	5 cut(s)	209, 440, 500, 636, 1043
AluI	AGCT	5 cut(s)	209, 440, 500, 636, 1043
Alw21I	GWGCWC	2 cut(s)	111, 241
Alw44I	GTGCAC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	802, 952
AoxI	GGCC	2 cut(s)	63, 194
ApaLI	GTGCAC	1 cut(s)	107
ApeKI	GCWGC	3 cut(s)	533, 578, 1043
ApoI	RAATTY	1 cut(s)	754
AspS9I	GGNCC	1 cut(s)	842
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	842
BaeGI	GKGCMC	2 cut(s)	111, 559
BalI	TGGCCA	1 cut(s)	65
BanI	GGYRCC	2 cut(s)	328, 680
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	2 cut(s)	111, 241
BbvI	GCAGC	3 cut(s)	520, 590, 1030
BccI	CCATC	2 cut(s)	671, 704
BfaI	CTAG	3 cut(s)	368, 654, 953
BfmI	CTRYAG	2 cut(s)	495, 1044
BfrI	CTTAAG	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	572
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	3 cut(s)	534, 579, 1044
BlsI	GCNGC	3 cut(s)	535, 580, 1045
BmcAI	AGTACT	2 cut(s)	570, 650
Bme18I	GGWCC	1 cut(s)	842
BmgT120I	GGNCC	1 cut(s)	842
BmiI	GGNNCC	4 cut(s)	330, 608, 682, 843
BmsI	GCATC	2 cut(s)	732, 988
BpiI	GAAGAC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	804
BsaJI	CCNNGG	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	2 cut(s)	595, 627
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	2 cut(s)	165, 1000
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	1020
BseLI	CCNNNNNNNGG	2 cut(s)	595, 627
BseMI	GCAATG	2 cut(s)	165, 1000
BseMII	CTCAG	1 cut(s)	705
BseNI	ACTGG	1 cut(s)	29
BseSI	GKGCMC	2 cut(s)	111, 559
BseXI	GCAGC	3 cut(s)	520, 590, 1030
BshFI	GGCC	2 cut(s)	65, 196
BshNI	GGYRCC	2 cut(s)	328, 680
BsiHKAI	GWGCWC	2 cut(s)	111, 241
BslFI	GGGAC	1 cut(s)	1037
BslI	CCNNNNNNNGG	2 cut(s)	595, 627
BsmFI	GGGAC	1 cut(s)	1037
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	2 cut(s)	65, 196
Bsp1286I	GDGCHC	3 cut(s)	111, 241, 559
Bsp143I	GATC	5 cut(s)	42, 408, 702, 794, 944
BspANI	GGCC	2 cut(s)	65, 196
BspCNI	CTCAG	1 cut(s)	706
BspLI	GGNNCC	4 cut(s)	330, 608, 682, 843
BspMAI	CTGCAG	1 cut(s)	1048
BspMI	ACCTGC	1 cut(s)	572
BspPI	GGATC	2 cut(s)	802, 952
BspQI	GCTCTTC	1 cut(s)	626
BspT107I	GGYRCC	2 cut(s)	328, 680
BspTI	CTTAAG	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	165, 1000
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	5 cut(s)	42, 408, 702, 794, 944
BssNAI	GTATAC	1 cut(s)	337
Bst1107I	GTATAC	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	981
Bst6I	CTCTTC	2 cut(s)	536, 626
BstAFI	CTTAAG	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	714
BstF5I	GGATG	1 cut(s)	1020
BstKTI	GATC	5 cut(s)	45, 411, 705, 797, 947
BstMBI	GATC	5 cut(s)	42, 408, 702, 794, 944
BstMWI	GCNNNNNNNGC	4 cut(s)	219, 305, 387, 813
BstNSI	RCATGY	3 cut(s)	494, 733, 820
BstSFI	CTRYAG	2 cut(s)	495, 1044
BstSLI	GKGCMC	2 cut(s)	111, 559
BstV1I	GCAGC	3 cut(s)	520, 590, 1030
BstV2I	GAAGAC	1 cut(s)	145
BstX2I	RGATCY	2 cut(s)	408, 944
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstYI	RGATCY	2 cut(s)	408, 944
BstZ17I	GTATAC	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	65, 196
BtsCI	GGATG	1 cut(s)	1020
BtsIMutI	CAGTG	3 cut(s)	36, 241, 470
BveI	ACCTGC	1 cut(s)	572
Cac8I	GCNNGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	842
CseI	GACGC	1 cut(s)	760
Csp6I	GTAC	2 cut(s)	569, 649
CviAII	CATG	9 cut(s)	40, 325, 491, 515, 603, 730, 817, 822, 914
CviQI	GTAC	2 cut(s)	569, 649
DdeI	CTNAG	1 cut(s)	714
DpnI	GATC	5 cut(s)	44, 410, 704, 796, 946
DpnII	GATC	5 cut(s)	42, 408, 702, 794, 944
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	2 cut(s)	536, 626
EarI	CTCTTC	2 cut(s)	536, 626
Eco147I	AGGCCT	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	842
Eco57I	CTGAAG	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	431
FaeI	CATG	9 cut(s)	43, 328, 494, 518, 606, 733, 820, 825, 917
FaqI	GGGAC	1 cut(s)	1037
FatI	CATG	9 cut(s)	39, 324, 490, 514, 602, 729, 816, 821, 913
FauNDI	CATATG	2 cut(s)	304, 778
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	3 cut(s)	534, 579, 1044
FokI	GGATG	1 cut(s)	1027
Fsp4HI	GCNGC	3 cut(s)	534, 579, 1044
FspBI	CTAG	3 cut(s)	368, 654, 953
GluI	GCNGC	3 cut(s)	534, 579, 1044
GsuI	CTGGAG	1 cut(s)	804
HaeIII	GGCC	2 cut(s)	65, 196
HgaI	GACGC	1 cut(s)	760
Hin1II	CATG	9 cut(s)	43, 328, 494, 518, 606, 733, 820, 825, 917
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	1 cut(s)	282
HpaI	GTTAAC	1 cut(s)	90
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	4 cut(s)	90, 109, 337, 852
Hpy188III	TCNNGA	5 cut(s)	95, 157, 368, 700, 877
Hpy8I	GTNNAC	4 cut(s)	90, 109, 337, 852
HpyAV	CCTTC	4 cut(s)	181, 325, 682, 742
HpyCH4III	ACNGT	1 cut(s)	981
HpyCH4V	TGCA	7 cut(s)	109, 222, 429, 536, 913, 1001, 1046
HpyF10VI	GCNNNNNNNGC	4 cut(s)	219, 305, 387, 813
HpyF3I	CTNAG	1 cut(s)	714
Hsp92II	CATG	9 cut(s)	43, 328, 494, 518, 606, 733, 820, 825, 917
KspAI	GTTAAC	1 cut(s)	90
Kzo9I	GATC	5 cut(s)	42, 408, 702, 794, 944
LguI	GCTCTTC	1 cut(s)	626
LmnI	GCTCC	3 cut(s)	387, 437, 785
Lsp1109I	GCAGC	3 cut(s)	520, 590, 1030
LweI	GCATC	2 cut(s)	732, 988
MaeI	CTAG	3 cut(s)	368, 654, 953
MaeIII	GTNAC	3 cut(s)	124, 250, 772
MalI	GATC	5 cut(s)	44, 410, 704, 796, 946
MboI	GATC	5 cut(s)	42, 408, 702, 794, 944
MboII	GAAGA	6 cut(s)	145, 223, 266, 553, 643, 1049
MflI	RGATCY	2 cut(s)	408, 944
MhlI	GDGCHC	3 cut(s)	111, 241, 559
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	6 cut(s)	7, 243, 504, 754, 920, 1008
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	276
MmeI	TCCRAC	1 cut(s)	772
MnlI	CCTC	5 cut(s)	304, 389, 543, 599, 620
Mox20I	TGGCCA	1 cut(s)	65
Mph1103I	ATGCAT	1 cut(s)	431
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	4 cut(s)	84, 89, 767, 872
MslI	CAYNNNNRTG	4 cut(s)	323, 489, 728, 734
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	500
MspCI	CTTAAG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	471
MwoI	GCNNNNNNNGC	4 cut(s)	219, 305, 387, 813
NdeI	CATATG	2 cut(s)	304, 778
NdeII	GATC	5 cut(s)	42, 408, 702, 794, 944
NlaIII	CATG	9 cut(s)	43, 328, 494, 518, 606, 733, 820, 825, 917
NlaIV	GGNNCC	4 cut(s)	330, 608, 682, 843
NmeAIII	GCCGAG	1 cut(s)	275
NmuCI	GTSAC	1 cut(s)	772
NsiI	ATGCAT	1 cut(s)	431
NspI	RCATGY	3 cut(s)	494, 733, 820
PceI	AGGCCT	1 cut(s)	196
PciI	ACATGT	1 cut(s)	729
PciSI	GCTCTTC	1 cut(s)	626
PctI	GAATGC	1 cut(s)	471
PkrI	GCNGC	3 cut(s)	535, 580, 1045
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
PscI	ACATGT	1 cut(s)	729
PspN4I	GGNNCC	4 cut(s)	330, 608, 682, 843
PspPI	GGNCC	1 cut(s)	842
PstI	CTGCAG	1 cut(s)	1048
PsuI	RGATCY	2 cut(s)	408, 944
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	2 cut(s)	570, 650
RsaNI	GTAC	2 cut(s)	569, 649
RseI	CAYNNNNRTG	4 cut(s)	323, 489, 728, 734
SapI	GCTCTTC	1 cut(s)	626
SaqAI	TTAA	4 cut(s)	84, 89, 767, 872
SatI	GCNGC	3 cut(s)	534, 579, 1044
Sau3AI	GATC	5 cut(s)	42, 408, 702, 794, 944
Sau96I	GGNCC	1 cut(s)	842
ScaI	AGTACT	2 cut(s)	570, 650
SchI	GAGTC	1 cut(s)	276
SduI	GDGCHC	3 cut(s)	111, 241, 559
SfaNI	GCATC	2 cut(s)	732, 988
SfcI	CTRYAG	2 cut(s)	495, 1044
SinI	GGWCC	1 cut(s)	842
SmiMI	CAYNNNNRTG	4 cut(s)	323, 489, 728, 734
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	6 cut(s)	7, 243, 504, 754, 920, 1008
SseBI	AGGCCT	1 cut(s)	196
SspI	AATATT	1 cut(s)	765
SspMI	CTAG	3 cut(s)	368, 654, 953
StuI	AGGCCT	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	981
TaqI	TCGA	1 cut(s)	897
TasI	AATT	6 cut(s)	7, 243, 504, 754, 920, 1008
TatI	WGTACW	2 cut(s)	568, 648
Tru1I	TTAA	4 cut(s)	84, 89, 767, 872
Tru9I	TTAA	4 cut(s)	84, 89, 767, 872
TscAI	CASTG	3 cut(s)	36, 241, 477
TseFI	GTSAC	1 cut(s)	772
TseI	GCWGC	3 cut(s)	533, 578, 1043
Tsp45I	GTSAC	1 cut(s)	772
TspDTI	ATGAA	5 cut(s)	307, 591, 930, 1031, 1050
TspRI	CASTG	3 cut(s)	36, 241, 477
Vha464I	CTTAAG	1 cut(s)	83
VneI	GTGCAC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	842
XapI	RAATTY	1 cut(s)	754
XbaI	TCTAGA	1 cut(s)	367
XceI	RCATGY	3 cut(s)	494, 733, 820
XmiI	GTMKAC	1 cut(s)	336
XspI	CTAG	3 cut(s)	368, 654, 953
ZrmI	AGTACT	2 cut(s)	570, 650
Zsp2I	ATGCAT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.