Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000124.1

Orthogroup ID

OG0000665

Physical Location & Seq

Genomic Coordinates Forward (+)

95782 .. 96868

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000124.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgaggagagcagcaaaggataaagagaagtgggcagttggttccctgcttttagcagcaggttgcctcttgtgggcttcatggtttctcatacaagccaagattggcaagagctacccatttcagtactctagcacagctatcttgtccttctttggtgccattcaatcagccatcttgagcttggttaccgagagaaacatgaacatgtcaatgtgggttttgaaggggaagttggagatattaggagcaaactgtagttgttgtcctgctgctaaaagtttgtcattgttgaccagtgtggtgggatctgtcctagtcatagtgggaatgtatgttctattgtgggggaaaagcaatgatgcaaaggaaactgtgatgaagcagacacaagcagctgaagaaggtacggatgtcccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

140

Amino Acids

15.15

Weight (kDa)

9.14

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca	FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica	MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica	Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis	pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis	RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata	RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora	Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii	Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa	Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha	Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana	Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	158
AclWI	GGATC	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	2 cut(s)	128, 409
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	167, 226
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AloI	GAACNNNNNNTCC	2 cut(s)	321, 353
AluBI	AGCT	4 cut(s)	114, 140, 183, 398
AluI	AGCT	4 cut(s)	114, 140, 183, 398
AlwI	GGATC	1 cut(s)	316
ApeKI	GCWGC	4 cut(s)	11, 56, 272, 395
BaeI	ACNNNNGTAYC	1 cut(s)	399
BanI	GGYRCC	1 cut(s)	158
BbvI	GCAGC	4 cut(s)	23, 68, 259, 407
BccI	CCATC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	132, 317
BfmI	CTRYAG	1 cut(s)	256
BfuAI	ACCTGC	1 cut(s)	50
BisI	GCNGC	4 cut(s)	12, 57, 273, 396
BlsI	GCNGC	4 cut(s)	13, 58, 274, 397
BmcAI	AGTACT	1 cut(s)	128
BmiI	GGNNCC	2 cut(s)	43, 160
BmsI	GCATC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	297
Bse3DI	GCAATG	1 cut(s)	364
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	364
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	4 cut(s)	23, 68, 259, 407
BshNI	GGYRCC	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	401
Bsp143I	GATC	1 cut(s)	308
BspLI	GGNNCC	2 cut(s)	43, 160
BspMI	ACCTGC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	257, 376
BstEII	GGTNACC	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	1 cut(s)	311
BstMBI	GATC	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	211
BstPI	GGTNACC	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	256
BstV1I	GCAGC	4 cut(s)	23, 68, 259, 407
BstX2I	RGATCY	1 cut(s)	308
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	308
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	304
BveI	ACCTGC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	127, 408
CviAII	CATG	3 cut(s)	81, 202, 208
CviJI	RGCY	7 cut(s)	77, 98, 114, 140, 173, 183, 398
CviKI_1	RGCY	7 cut(s)	77, 98, 114, 140, 173, 183, 398
CviQI	GTAC	2 cut(s)	127, 408
DpnI	GATC	1 cut(s)	310
DpnII	GATC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	420
Eco91I	GGTNACC	1 cut(s)	187
EcoO65I	GGTNACC	1 cut(s)	187
FaeI	CATG	3 cut(s)	84, 205, 211
FaiI	YATR	6 cut(s)	82, 92, 203, 209, 323, 336
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	3 cut(s)	80, 201, 207
Fnu4HI	GCNGC	4 cut(s)	12, 57, 273, 396
Fsp4HI	GCNGC	4 cut(s)	12, 57, 273, 396
FspBI	CTAG	2 cut(s)	132, 317
GluI	GCNGC	4 cut(s)	12, 57, 273, 396
Hin1II	CATG	3 cut(s)	84, 205, 211
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	294
HpyAV	CCTTC	3 cut(s)	160, 220, 398
HpyCH4III	ACNGT	2 cut(s)	257, 376
HpyCH4V	TGCA	1 cut(s)	365
Hsp92II	CATG	3 cut(s)	84, 205, 211
Kzo9I	GATC	1 cut(s)	308
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	4 cut(s)	45, 59, 282, 310
Lsp1109I	GCAGC	4 cut(s)	23, 68, 259, 407
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	132, 317
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	310
MboI	GATC	1 cut(s)	308
MboII	GAAGA	1 cut(s)	413
MflI	RGATCY	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	1 cut(s)	77
MslI	CAYNNNNRTG	2 cut(s)	206, 212
MspA1I	CMGCKG	1 cut(s)	398
NdeII	GATC	1 cut(s)	308
NlaIII	CATG	3 cut(s)	84, 205, 211
NlaIV	GGNNCC	2 cut(s)	43, 160
NspI	RCATGY	1 cut(s)	211
PciI	ACATGT	1 cut(s)	207
PkrI	GCNGC	4 cut(s)	13, 58, 274, 397
PscI	ACATGT	1 cut(s)	207
PspEI	GGTNACC	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	43, 160
PsuI	RGATCY	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	2 cut(s)	128, 409
RsaNI	GTAC	2 cut(s)	127, 408
RseI	CAYNNNNRTG	2 cut(s)	206, 212
SatI	GCNGC	4 cut(s)	12, 57, 273, 396
Sau3AI	GATC	1 cut(s)	308
ScaI	AGTACT	1 cut(s)	128
SetI	ASST	6 cut(s)	64, 116, 142, 185, 400, 409
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	2 cut(s)	206, 212
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
SspMI	CTAG	2 cut(s)	132, 317
TaaI	ACNGT	2 cut(s)	257, 376
TatI	WGTACW	1 cut(s)	126
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	4 cut(s)	11, 56, 272, 395
TspDTI	ATGAA	3 cut(s)	69, 218, 395
TspRI	CASTG	1 cut(s)	304
XceI	RCATGY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XspI	CTAG	2 cut(s)	132, 317
ZrmI	AGTACT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.