Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000665

Physical Location & Seq

Genomic Coordinates Forward (+)

14163253 .. 14168704

Gene Structure 5452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027703

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTGCCTGTTAACACTTACCTATTGGCACTTCCATTTGGTCTAGAGAGAGTGAGCATTAGGAGCAAGGGAGGCAGAGCTAAGATATTGGGTGCTTTGATATGCATTGGTGGAGCTTTGTCATTGACCTTATACAAAGGAATGCCACTGACCAACCAACACTCACATGCCACAGCTGAAATTGAAAACCATGACTATATACTGAGTGCAGAAAAGAAGAGAGTGAGGTGGGCACTTGGTTCAGTGTTTTTGGCAGCAGGTTGCATGTTGTGGGCTTCATGGTTTCTCATACAAGCCAAGATTGGGAAGGGCTACCCATTTCAGTACTCTAGCACAGCCATCTTGTCCTTTGGTGTCATTCAGTCAGCCATCTTGACCTTGCCTACCGACAGAAGCATCAACACGTCAATGTGGGTTTTGAAGGGGAAGTTGGAGATATTGAGTGTCACATATGCTGTGAGTATTTACAGTTGGATCCGGGTTGACCTATGTAGGCATGTCATGGTGTGTGAAGCAAAAGGTCCATTGTTTACATCAGCATTCACTCCCTTAATCCAGATATTTGTGGCTATGTTTGACTTCTCAACCTTGCATGAACAGATCTATGTTGGAAGGTTGGCTCAATTATATTGTGGTGGTTATGTCCTAGCTATAGTGGGAATGTATGTTCTACTCTGGGGGAAAAGCGATGATGCGAAGGAAATTGTGGTGAAGCAGACACCAGCAGCTGAAGAAGGAGGAGAGGGTCGGAGAGAGGGATGGGCTGAGGAGGGTGTGGGAGGTTTGCGAGTGCCGGACTGGGAGAGTCTTGGTGATGGAGGTCACCAGAAGTATGTCTCCCAGTTTAGAAGAAGCGTCATTGTGGGCTTTAGCTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

294

Amino Acids

32.29

Weight (kDa)

8.72

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca	FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica	MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica	Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis	pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis	RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata	RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora	Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii	Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa	Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha	Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana	Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	4
AclWI	GGATC	2 cut(s)	469, 482
AcuI	CTGAAG	1 cut(s)	750
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	303
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	2 cut(s)	185, 421
AjiI	CACGTC	1 cut(s)	405
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AloI	GAACNNNNNNTCC	2 cut(s)	651, 683
AluBI	AGCT	6 cut(s)	80, 116, 176, 650, 728, 873
AluI	AGCT	6 cut(s)	80, 116, 176, 650, 728, 873
Alw26I	GTCTC	1 cut(s)	841
AlwI	GGATC	2 cut(s)	469, 482
AlwNI	CAGNNNCTG	1 cut(s)	728
ApeKI	GCWGC	2 cut(s)	254, 725
AspS9I	GGNCC	1 cut(s)	521
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	3 cut(s)	721, 815, 824
AvaII	GGWCC	1 cut(s)	521
BaeGI	GKGCMC	1 cut(s)	235
BamHI	GGATCC	1 cut(s)	474
BanI	GGYRCC	1 cut(s)	4
BbvCI	CCTCAGC	1 cut(s)	765
BbvI	GCAGC	2 cut(s)	266, 737
BccI	CCATC	4 cut(s)	347, 377, 753, 809
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	841
BfaI	CTAG	3 cut(s)	44, 330, 647
BfmI	CTRYAG	1 cut(s)	651
BfuAI	ACCTGC	1 cut(s)	248
BglII	AGATCT	1 cut(s)	600
BisI	GCNGC	2 cut(s)	255, 726
BlsI	GCNGC	2 cut(s)	256, 727
BmcAI	AGTACT	1 cut(s)	326
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	1 cut(s)	521
BmgBI	CACGTC	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	6, 476
BmrFI	CCNGG	1 cut(s)	479
BmrI	ACTGGG	2 cut(s)	808, 835
BmsI	GCATC	2 cut(s)	405, 682
BmuI	ACTGGG	2 cut(s)	808, 835
Bpu10I	CCTNAGC	1 cut(s)	765
BpuMI	CCSGG	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse1I	ACTGG	2 cut(s)	803, 841
BseGI	GGATG	1 cut(s)	764
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseMII	CTCAG	2 cut(s)	194, 756
BseNI	ACTGG	2 cut(s)	803, 841
BseRI	GAGGAG	2 cut(s)	753, 782
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	266, 737
BsgI	GTGCAG	1 cut(s)	228
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	2 cut(s)	478, 794
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	841
BsmI	GAATGC	2 cut(s)	147, 539
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	474, 600
BspCNI	CTCAG	2 cut(s)	195, 757
BspLI	GGNNCC	2 cut(s)	6, 476
BspMI	ACCTGC	1 cut(s)	248
BspPI	GGATC	2 cut(s)	469, 482
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	803, 841
BssMI	GATC	2 cut(s)	474, 600
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	1 cut(s)	212
BstDEI	CTNAG	3 cut(s)	81, 203, 765
BstEII	GGTNACC	1 cut(s)	821
BstF5I	GGATG	1 cut(s)	764
BstKTI	GATC	2 cut(s)	477, 603
BstMAI	GTCTC	1 cut(s)	841
BstMBI	GATC	2 cut(s)	474, 600
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 72
BstNSI	RCATGY	3 cut(s)	170, 268, 500
BstPI	GGTNACC	1 cut(s)	821
BstSCI	CCNGG	1 cut(s)	477
BstSFI	CTRYAG	1 cut(s)	651
BstSLI	GKGCMC	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	266, 737
BstX2I	RGATCY	2 cut(s)	474, 600
BstYI	RGATCY	2 cut(s)	474, 600
BtgZI	GCGATG	1 cut(s)	702
BtrI	CACGTC	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	764
BtsIMutI	CAGTG	2 cut(s)	146, 249
BveI	ACCTGC	1 cut(s)	248
CaiI	CAGNNNCTG	1 cut(s)	728
Cfr13I	GGNCC	1 cut(s)	521
CseI	GACGC	1 cut(s)	844
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	7 cut(s)	167, 191, 265, 279, 497, 502, 593
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	3 cut(s)	81, 203, 765
DpnI	GATC	2 cut(s)	476, 602
DpnII	GATC	2 cut(s)	474, 600
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	750
Eco91I	GGTNACC	1 cut(s)	821
EcoO65I	GGTNACC	1 cut(s)	821
EcoT22I	ATGCAT	1 cut(s)	107
FaeI	CATG	7 cut(s)	170, 194, 268, 282, 500, 505, 596
FatI	CATG	7 cut(s)	166, 190, 264, 278, 496, 501, 592
FauNDI	CATATG	1 cut(s)	451
Fnu4HI	GCNGC	2 cut(s)	255, 726
FokI	GGATG	1 cut(s)	771
Fsp4HI	GCNGC	2 cut(s)	255, 726
FspBI	CTAG	3 cut(s)	44, 330, 647
GluI	GCNGC	2 cut(s)	255, 726
HapII	CCGG	2 cut(s)	478, 794
HgaI	GACGC	1 cut(s)	844
Hin1II	CATG	7 cut(s)	170, 194, 268, 282, 500, 505, 596
HincII	GTYRAC	2 cut(s)	13, 484
HindII	GTYRAC	2 cut(s)	13, 484
HinfI	GANTC	1 cut(s)	805
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	2 cut(s)	478, 794
HphI	GGTGA	3 cut(s)	721, 815, 824
Hpy166II	GTNNAC	3 cut(s)	13, 484, 531
Hpy188I	TCNGA	1 cut(s)	750
Hpy188III	TCNNGA	3 cut(s)	44, 373, 556
Hpy8I	GTNNAC	3 cut(s)	13, 484, 531
HpyAV	CCTTC	5 cut(s)	301, 415, 606, 691, 728
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	4 cut(s)	105, 209, 264, 592
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 72
HpyF3I	CTNAG	3 cut(s)	81, 203, 765
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	7 cut(s)	170, 194, 268, 282, 500, 505, 596
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	474, 600
LmnI	GCTCC	2 cut(s)	63, 113
Lsp1109I	GCAGC	2 cut(s)	266, 737
LweI	GCATC	2 cut(s)	405, 682
MaeI	CTAG	3 cut(s)	44, 330, 647
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	2 cut(s)	445, 821
MalI	GATC	2 cut(s)	476, 602
MboI	GATC	2 cut(s)	474, 600
MboII	GAAGA	3 cut(s)	229, 743, 861
MflI	RGATCY	2 cut(s)	474, 600
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	3 cut(s)	180, 623, 702
MlyI	GAGTC	1 cut(s)	814
MmeI	TCCRAC	4 cut(s)	411, 452, 589, 728
MnlI	CCTC	9 cut(s)	65, 219, 731, 736, 748, 760, 763, 773, 812
Mph1103I	ATGCAT	1 cut(s)	107
MseI	TTAA	2 cut(s)	12, 551
MslI	CAYNNNNRTG	2 cut(s)	165, 407
MspA1I	CMGCKG	2 cut(s)	176, 728
MspI	CCGG	2 cut(s)	478, 794
MspR9I	CCNGG	1 cut(s)	479
Mva1269I	GAATGC	2 cut(s)	147, 539
MwoI	GCNNNNNNNGC	2 cut(s)	63, 72
NciI	CCSGG	1 cut(s)	479
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	2 cut(s)	474, 600
NlaIII	CATG	7 cut(s)	170, 194, 268, 282, 500, 505, 596
NlaIV	GGNNCC	2 cut(s)	6, 476
NmuCI	GTSAC	2 cut(s)	445, 821
NsiI	ATGCAT	1 cut(s)	107
NspI	RCATGY	3 cut(s)	170, 268, 500
PctI	GAATGC	2 cut(s)	147, 539
PkrI	GCNGC	2 cut(s)	256, 727
PleI	GAGTC	1 cut(s)	813
PpsI	GAGTC	1 cut(s)	813
PspEI	GGTNACC	1 cut(s)	821
PspN4I	GGNNCC	2 cut(s)	6, 476
PspPI	GGNCC	1 cut(s)	521
PstNI	CAGNNNCTG	1 cut(s)	728
PsuI	RGATCY	2 cut(s)	474, 600
PvuII	CAGCTG	2 cut(s)	176, 728
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	2 cut(s)	165, 407
SaqAI	TTAA	2 cut(s)	12, 551
SatI	GCNGC	2 cut(s)	255, 726
Sau3AI	GATC	2 cut(s)	474, 600
Sau96I	GGNCC	1 cut(s)	521
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	1 cut(s)	814
ScrFI	CCNGG	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	235
SfaNI	GCATC	2 cut(s)	405, 682
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	1 cut(s)	521
SmiMI	CAYNNNNRTG	2 cut(s)	165, 407
Sse9I	AATT	3 cut(s)	180, 623, 702
SspMI	CTAG	3 cut(s)	44, 330, 647
StyD4I	CCNGG	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	1 cut(s)	407
TasI	AATT	3 cut(s)	180, 623, 702
TatI	WGTACW	1 cut(s)	324
Tru1I	TTAA	2 cut(s)	12, 551
Tru9I	TTAA	2 cut(s)	12, 551
TscAI	CASTG	2 cut(s)	153, 249
TseFI	GTSAC	2 cut(s)	445, 821
TseI	GCWGC	2 cut(s)	254, 725
Tsp45I	GTSAC	2 cut(s)	445, 821
TspDTI	ATGAA	2 cut(s)	267, 609
TspRI	CASTG	2 cut(s)	153, 249
VpaK11BI	GGWCC	1 cut(s)	521
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	3 cut(s)	170, 268, 500
XspI	CTAG	3 cut(s)	44, 330, 647
ZrmI	AGTACT	1 cut(s)	326
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.