pycom06g11570

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000665
Physical Location & Seq
Reverse (-)
16840694 .. 16842398
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g11570.4

Sequence Viewer

Length: 1095 bp
ATGACGGACGTGAAAGGGTGTGACGAATGGAAGCCTTTTATTGCCATGGTAGCAATCGATTTCTCGTTCGCTATAGTGAATATTCTGCTCAAGAAAGTGCTCGATGAGGGAATGAACCATTTGGTTCTTATCACGTACCGGTTGACGATTGCTACCATTTTCTTAGCACCAGTTAGCTACTTTGGGGAAAGGAATACTAGACCAAAGCTCACACTTCGCATCACATGTTTTCACTTCTTAAGTGCAATTCTTGGGACATCCCTTACGCAATACTTCTTTCTCCTCGGAATCCAATACACATCTGCGACTTTTGCCTGTGCCTTCGTCAACATGGTGCCTGTGATCACTTTCATAATAGCGTTAGAGAAAGTGAACTTAAAATGCCACAGTGGGAGAGCAAAAGTACTCGGTACACTGGTGTGCATCGGTGGAGCTTTTATACTAACTCTTTACAAAGGAGTTCCTCTATTTGATTCCTCAAAATCCAGAGTTAGTACTCAAACCATCGATCATGGCATTCAGCTGAGGTCAACGCGAAACCATGAGGGTTGGACGATTGGTTCGATAGCTTTGGTTGGCGGAACCCTATTGTGGTCTTCATGGTTTCTTGTTCAAACAAACATTAGCAAGATGTATCCTTGCCAGTATTCTAGCACCACAATAATGAATTTCTTTGGTGCCATTCAGTCTGCAATCTTAGGTGTTTGCACAGGAAGGAACCTTTCCATGTGGGTTCTGAGGGGAAGGACACAAGTCATAGCTGTCCTGTTTTCTGGAATGATAGCATCGGGATTAGGTTTTGTGGGGATGGCATGGTGTGTGAGGAAACGGGGGCCGGTGTTTACTGCAGCTTTTAGCCCGCTCGTGCAGATAATGGTGGCCCTAATCGGTATCCCCATCTTCCATGAACTACTCCACCTCGGAAGCTTGTTAGGATCTATCGTTGTGATCGTCGGCTTGTACATTCTTCTATGGGGTAAGAAAAAAGAGATGCAGAAATGTGCGACAAAACTAGTCCAAGAATCTGAATCAGTCAAAGAGCAGGAGCCGCATTTACCCGCCATCACAGTCTCCGTTGATTCGCCGTGTCCTTGA

Protein Analysis

365

Amino Acids

40.06

Weight (kDa)

9.37

Isoelectric Point (pI)

31.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000665)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 334, 677
AccBSI CCGCTC 1 cut(s) 862
AccII CGCG 1 cut(s) 535
AciI CCGC 4 cut(s) 579, 860, 1049, 1059
AclWI GGATC 1 cut(s) 943
AcsI RAATTY 1 cut(s) 667
AfaI GTAC 5 cut(s) 137, 405, 412, 496, 962
AfiI CCNNNNNNNGG 1 cut(s) 591
AflII CTTAAG 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 224
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 1 cut(s) 614
AhlI ACTAGT 1 cut(s) 1012
AjiI CACGTC 1 cut(s) 10
AleI CACNNNNGTG 1 cut(s) 418
AloI GAACNNNNNNTCC 2 cut(s) 544, 576
AluBI AGCT 8 cut(s) 177, 208, 434, 523, 569, 761, 851, 927
AluI AGCT 8 cut(s) 177, 208, 434, 523, 569, 761, 851, 927
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 1075
AlwI GGATC 1 cut(s) 943
AoxI GGCC 2 cut(s) 833, 879
ApeKI GCWGC 1 cut(s) 848
ApoI RAATTY 1 cut(s) 667
ArsI GACNNNNNNTTYG 2 cut(s) 544, 576
AsiGI ACCGGT 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 833, 880
BaeI ACNNNNGTAYC 2 cut(s) 402, 435
BanI GGYRCC 2 cut(s) 334, 677
BauI CACGAG 1 cut(s) 863
BbsI GAAGAC 1 cut(s) 588
Bbv12I GWGCWC 1 cut(s) 102
BbvCI CCTCAGC 1 cut(s) 524
BbvI GCAGC 1 cut(s) 860
BccI CCATC 4 cut(s) 512, 802, 905, 1070
BceAI ACGGC 1 cut(s) 1069
BciVI GTATCC 2 cut(s) 645, 902
BclI TGATCA 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 1075
BcuI ACTAGT 1 cut(s) 1012
BfaI CTAG 3 cut(s) 198, 651, 1013
BfmI CTRYAG 2 cut(s) 72, 846
BfrI CTTAAG 1 cut(s) 238
BfuI GTATCC 2 cut(s) 645, 902
BisI GCNGC 2 cut(s) 849, 1049
BlsI GCNGC 2 cut(s) 850, 1050
BmcAI AGTACT 2 cut(s) 405, 496
BmgBI CACGTC 1 cut(s) 10
BmgT120I GGNCC 2 cut(s) 833, 880
BmiI GGNNCC 6 cut(s) 336, 583, 679, 719, 834, 1047
BmsI GCATC 4 cut(s) 228, 432, 794, 981
BoxI GACNNNNGTC 1 cut(s) 752
BpiI GAAGAC 1 cut(s) 588
Bpu10I CCTNAGC 1 cut(s) 524
BpuEI CTTGAG 1 cut(s) 74
Bsa29I ATCGAT 2 cut(s) 57, 507
BsaAI YACGTR 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 45, 283, 919
BsaWI WCCGGW 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 591
Bse118I RCCGGY 2 cut(s) 138, 835
Bse1I ACTGG 3 cut(s) 170, 420, 643
BseCI ATCGAT 2 cut(s) 57, 507
BseDI CCNNGG 3 cut(s) 45, 283, 919
BseGI GGATG 2 cut(s) 257, 813
BseLI CCNNNNNNNGG 1 cut(s) 591
BseMII CTCAG 2 cut(s) 515, 728
BseNI ACTGG 3 cut(s) 170, 420, 643
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 860
BsgI GTGCAG 1 cut(s) 887
Bsh1236I CGCG 1 cut(s) 535
BshFI GGCC 2 cut(s) 835, 881
BshNI GGYRCC 2 cut(s) 334, 677
BshTI ACCGGT 1 cut(s) 138
BshVI ATCGAT 2 cut(s) 57, 507
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 2 cut(s) 139, 836
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 591
BsmAI GTCTC 1 cut(s) 1075
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 516
BsnI GGCC 2 cut(s) 835, 881
Bsp1286I GDGCHC 1 cut(s) 102
Bsp1407I TGTACA 1 cut(s) 960
Bsp143I GATC 4 cut(s) 342, 508, 935, 948
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 4 cut(s) 579, 860, 1049, 1059
BspANI GGCC 2 cut(s) 835, 881
BspCNI CTCAG 2 cut(s) 516, 729
BspDI ATCGAT 2 cut(s) 57, 507
BspFNI CGCG 1 cut(s) 535
BspLI GGNNCC 6 cut(s) 336, 583, 679, 719, 834, 1047
BspMAI CTGCAG 1 cut(s) 850
BspPI GGATC 1 cut(s) 943
BspT107I GGYRCC 2 cut(s) 334, 677
BspTI CTTAAG 1 cut(s) 238
BsrBI CCGCTC 1 cut(s) 862
BsrFI RCCGGY 2 cut(s) 138, 835
BsrGI TGTACA 1 cut(s) 960
BsrI ACTGG 3 cut(s) 170, 420, 643
BssAI RCCGGY 2 cut(s) 138, 835
BssECI CCNNGG 3 cut(s) 45, 283, 919
BssMI GATC 4 cut(s) 342, 508, 935, 948
BssSI CACGAG 1 cut(s) 863
BssT1I CCWWGG 1 cut(s) 45
Bst2BI CACGAG 1 cut(s) 863
Bst4CI ACNGT 2 cut(s) 389, 1069
BstAFI CTTAAG 1 cut(s) 238
BstAUI TGTACA 1 cut(s) 960
BstBAI YACGTR 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 860
BstDEI CTNAG 4 cut(s) 163, 524, 697, 737
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 2 cut(s) 257, 813
BstFNI CGCG 1 cut(s) 535
BstKTI GATC 4 cut(s) 345, 511, 938, 951
BstMAI GTCTC 1 cut(s) 1075
BstMBI GATC 4 cut(s) 342, 508, 935, 948
BstMWI GCNNNNNNNGC 3 cut(s) 50, 311, 1048
BstNSI RCATGY 1 cut(s) 228
BstPAI GACNNNNGTC 1 cut(s) 752
BstSFI CTRYAG 2 cut(s) 72, 846
BstUI CGCG 1 cut(s) 535
BstV1I GCAGC 1 cut(s) 860
BstV2I GAAGAC 1 cut(s) 588
BstX2I RGATCY 1 cut(s) 935
BstYI RGATCY 1 cut(s) 935
Bsu15I ATCGAT 2 cut(s) 57, 507
BsuI GTATCC 2 cut(s) 645, 902
BsuRI GGCC 2 cut(s) 835, 881
BsuTUI ATCGAT 2 cut(s) 57, 507
BtgI CCRYGG 1 cut(s) 45
BtrI CACGTC 1 cut(s) 10
BtsCI GGATG 2 cut(s) 257, 813
BtsIMutI CAGTG 2 cut(s) 394, 413
Cac8I GCNNGC 1 cut(s) 860
Cfr10I RCCGGY 2 cut(s) 138, 835
Cfr13I GGNCC 2 cut(s) 833, 880
ClaI ATCGAT 2 cut(s) 57, 507
Csp6I GTAC 5 cut(s) 136, 404, 411, 495, 961
CspAI ACCGGT 1 cut(s) 138
CviAII CATG 9 cut(s) 46, 225, 331, 512, 542, 600, 727, 813, 905
CviQI GTAC 5 cut(s) 136, 404, 411, 495, 961
DdeI CTNAG 4 cut(s) 163, 524, 697, 737
DpnI GATC 4 cut(s) 344, 510, 937, 950
DpnII GATC 4 cut(s) 342, 508, 935, 948
EciI GGCGGA 1 cut(s) 594
Eco130I CCWWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 9 cut(s) 49, 228, 334, 515, 545, 603, 730, 816, 908
FaqI GGGAC 1 cut(s) 268
FatI CATG 9 cut(s) 45, 224, 330, 511, 541, 599, 726, 812, 904
FauI CCCGC 2 cut(s) 867, 1066
FbaI TGATCA 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 849, 1049
FokI GGATG 2 cut(s) 244, 820
Fsp4HI GCNGC 2 cut(s) 849, 1049
FspBI CTAG 3 cut(s) 198, 651, 1013
GluI GCNGC 2 cut(s) 849, 1049
HaeIII GGCC 2 cut(s) 835, 881
HapII CCGG 2 cut(s) 139, 836
Hin1II CATG 9 cut(s) 49, 228, 334, 515, 545, 603, 730, 816, 908
HincII GTYRAC 3 cut(s) 144, 328, 531
HindII GTYRAC 3 cut(s) 144, 328, 531
HindIII AAGCTT 1 cut(s) 925
HinfI GANTC 5 cut(s) 288, 473, 1022, 1028, 1079
HpaII CCGG 2 cut(s) 139, 836
Hpy166II GTNNAC 6 cut(s) 144, 328, 373, 413, 531, 843
Hpy188I TCNGA 4 cut(s) 287, 738, 923, 1027
Hpy188III TCNNGA 4 cut(s) 91, 486, 774, 789
Hpy8I GTNNAC 6 cut(s) 144, 328, 373, 413, 531, 843
Hpy99I CGWCG 1 cut(s) 956
HpyAV CCTTC 3 cut(s) 331, 708, 738
HpyCH4III ACNGT 2 cut(s) 389, 1069
HpyCH4IV ACGT 2 cut(s) 9, 134
HpyCH4V TGCA 7 cut(s) 245, 423, 692, 708, 848, 868, 994
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 311, 1048
HpyF3I CTNAG 4 cut(s) 163, 524, 697, 737
HpySE526I ACGT 2 cut(s) 9, 134
Hsp92II CATG 9 cut(s) 49, 228, 334, 515, 545, 603, 730, 816, 908
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 4 cut(s) 342, 508, 935, 948
LmnI GCTCC 2 cut(s) 431, 1045
Lsp1109I GCAGC 1 cut(s) 860
LweI GCATC 4 cut(s) 228, 432, 794, 981
MaeI CTAG 3 cut(s) 198, 651, 1013
MaeII ACGT 2 cut(s) 9, 134
MaeIII GTNAC 1 cut(s) 20
MalI GATC 4 cut(s) 344, 510, 937, 950
MbiI CCGCTC 1 cut(s) 862
MboI GATC 4 cut(s) 342, 508, 935, 948
MboII GAAGA 3 cut(s) 588, 892, 959
MflI RGATCY 1 cut(s) 935
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 2 cut(s) 246, 667
MmeI TCCRAC 1 cut(s) 530
MnlI CCTC 9 cut(s) 100, 293, 474, 487, 519, 538, 732, 816, 929
MseI TTAA 2 cut(s) 239, 377
MslI CAYNNNNRTG 2 cut(s) 418, 662
MspA1I CMGCKG 1 cut(s) 523
MspCI CTTAAG 1 cut(s) 238
MspI CCGG 2 cut(s) 139, 836
Mva1269I GAATGC 1 cut(s) 516
MvnI CGCG 1 cut(s) 535
MwoI GCNNNNNNNGC 3 cut(s) 50, 311, 1048
NcoI CCATGG 1 cut(s) 45
NdeII GATC 4 cut(s) 342, 508, 935, 948
NlaIII CATG 9 cut(s) 49, 228, 334, 515, 545, 603, 730, 816, 908
NlaIV GGNNCC 6 cut(s) 336, 583, 679, 719, 834, 1047
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 1 cut(s) 228
OliI CACNNNNGTG 1 cut(s) 418
PciI ACATGT 1 cut(s) 224
PcsI WCGNNNNNNNCGW 2 cut(s) 560, 948
PctI GAATGC 1 cut(s) 516
PfeI GAWTC 5 cut(s) 288, 473, 1022, 1028, 1079
PinAI ACCGGT 1 cut(s) 138
PkrI GCNGC 2 cut(s) 850, 1050
Ppu21I YACGTR 1 cut(s) 135
PscI ACATGT 1 cut(s) 224
PshAI GACNNNNGTC 1 cut(s) 752
PspN4I GGNNCC 6 cut(s) 336, 583, 679, 719, 834, 1047
PspPI GGNCC 2 cut(s) 833, 880
PstI CTGCAG 1 cut(s) 850
PsuI RGATCY 1 cut(s) 935
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 5 cut(s) 137, 405, 412, 496, 962
RsaNI GTAC 5 cut(s) 136, 404, 411, 495, 961
RseI CAYNNNNRTG 2 cut(s) 418, 662
SaqAI TTAA 2 cut(s) 239, 377
SatI GCNGC 2 cut(s) 849, 1049
Sau3AI GATC 4 cut(s) 342, 508, 935, 948
Sau96I GGNCC 2 cut(s) 833, 880
ScaI AGTACT 2 cut(s) 405, 496
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 4 cut(s) 228, 432, 794, 981
SfcI CTRYAG 2 cut(s) 72, 846
SmiMI CAYNNNNRTG 2 cut(s) 418, 662
SmlI CTYRAG 2 cut(s) 89, 238
SmoI CTYRAG 2 cut(s) 89, 238
SpeI ACTAGT 1 cut(s) 1012
Sse9I AATT 2 cut(s) 246, 667
SsiI CCGC 4 cut(s) 579, 860, 1049, 1059
SspI AATATT 1 cut(s) 82
SspMI CTAG 3 cut(s) 198, 651, 1013
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 389, 1069
TaiI ACGT 2 cut(s) 12, 137
TaqI TCGA 4 cut(s) 57, 102, 507, 563
TasI AATT 2 cut(s) 246, 667
TatI WGTACW 3 cut(s) 403, 494, 960
TauI GCSGC 1 cut(s) 1051
TfiI GAWTC 5 cut(s) 288, 473, 1022, 1028, 1079
Tru1I TTAA 2 cut(s) 239, 377
Tru9I TTAA 2 cut(s) 239, 377
TscAI CASTG 2 cut(s) 394, 420
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 1 cut(s) 848
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 5 cut(s) 128, 340, 588, 680, 921
TspGWI ACGGA 2 cut(s) 20, 1063
TspRI CASTG 2 cut(s) 394, 420
Vha464I CTTAAG 1 cut(s) 238
XapI RAATTY 1 cut(s) 667
XceI RCATGY 1 cut(s) 228
XspI CTAG 3 cut(s) 198, 651, 1013
ZrmI AGTACT 2 cut(s) 405, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.