Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000665

Physical Location & Seq

Genomic Coordinates Forward (+)

11956458 .. 11959098

Gene Structure 2641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G30340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGTAAAGTTTGATACAAAACTATGGAAGGCTGTGCTTATGATGTCCATGATCAACATTGGTTTAAGTGTTGTAAACGTTATGTTCAAGAAGATGATTGATGAAGGACTTAACCGTATGGTCGCGACCACTTACCGACTTGCTGTAGGAACTCTGTTCTTGATACCATTCGCGATTTTCTTGGAAAGACATAACAGGCCAAAACTCACGGGTAGGATCTTGTGTTCACTCTTCTTTAGCGCTCTTCTGGGGACAAGTTTGGTGCAATACTTCTTTCTTATTGGACTAGAGTATACATCTTCAACTTTTTCCTTAGCGTTTAGCAACATGGTTCCTTCGGTTACATTTGCCTTGGCTCTCGTCTTTAGGCAAGAGACGCTGAACATCAAGAGCAACGTAGGAAGAGCCAAACTGCTAGGCACAATGATATGTATTTGTGGAGCTTTAGTGCTTACGCTTTATAAAGGAACCGCTTTAAGTCGAGAACACAGTACTCATATGGAAACACATACAAGAACTGATTCCACCGGTGCAATGACACAAAAGTGGGCAATGGGTTCGATCATGCTGGTTATATCGATCATAATATGGTCATCTTGGTTCATTGTTCAAGCTAAAATAAGCCGAGTTTATCCGTGCCAATACACGAGTACCACGATCCTCTCTTTCTTTGGCGTGATTCAATCTGCTTTGTTGAGTTTGATCTCGGAGAGGAGCACATCTATGTGGGTCGTTAAAGACAAGTTCCAAGTTTTAGCTTTACTTTATTCGGGTATCGTTGGATCGGGATTGTGCTACGTGGGAATGTCGTGGTGTCTCCGCCAAAGAGGTGCGGTGTTCACGTCGAGCTTCATACCTTTGATTCAAGTCTTTGCTGCCATTTTCAGCTTCTCTTTCCTTCATGAGCAAATATACTGTGGAAGTGTGATAGGATCAATGGTCATTATCGTGGGACTTTATATACTTTTATGGGGAAAAAGCAAGGATAAGTCTGCATCAGTGACCAAACAAGAACCATTAGATCTTGATATTGAAGGTTGTGGGACAGCACCAAAGGAACTCAATAGTACTGCCCATCAAGTGTCTGCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

364

Amino Acids

40.37

Weight (kDa)

9.49

Isoelectric Point (pI)

23.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	10 - 152	2.9e-14	EamA-like transporter family
EamA	PF00892	185 - 323	2.5e-13	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca	FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica	MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica	Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis	pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis	RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata	RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora	Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii	Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa	Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha	Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana	Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AccI	GTMKAC	1 cut(s)	293
AccII	CGCG	2 cut(s)	125, 173
AciI	CCGC	3 cut(s)	471, 820, 833
AclI	AACGTT	1 cut(s)	78
AclWI	GGATC	4 cut(s)	224, 652, 790, 940
AfaI	GTAC	3 cut(s)	493, 652, 1069
AfeI	AGCGCT	1 cut(s)	241
AgeI	ACCGGT	1 cut(s)	527
AgsI	TTSAA	6 cut(s)	88, 303, 611, 683, 866, 1034
AjiI	CACGTC	1 cut(s)	843
AleI	CACNNNNGTG	1 cut(s)	544
AloI	GAACNNNNNNTCC	2 cut(s)	208, 240
AluBI	AGCT	5 cut(s)	443, 614, 758, 849, 888
AluI	AGCT	5 cut(s)	443, 614, 758, 849, 888
Alw21I	GWGCWC	1 cut(s)	719
Alw26I	GTCTC	2 cut(s)	368, 821
AlwI	GGATC	4 cut(s)	224, 652, 790, 940
Aor51HI	AGCGCT	1 cut(s)	241
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	875
AsiGI	ACCGGT	1 cut(s)	527
Asp700I	GAANNNNTTC	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	242
BaeI	ACNNNNGTAYC	2 cut(s)	634, 667
BauI	CACGAG	1 cut(s)	646
Bbv12I	GWGCWC	1 cut(s)	719
BbvI	GCAGC	1 cut(s)	862
BccI	CCATC	1 cut(s)	1083
BcgI	CGANNNNNNTGC	2 cut(s)	540, 574
BclI	TGATCA	1 cut(s)	51
BcoDI	GTCTC	2 cut(s)	368, 821
BfaI	CTAG	2 cut(s)	287, 416
BfmI	CTRYAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	243
BglII	AGATCT	1 cut(s)	1021
BisI	GCNGC	1 cut(s)	876
BlsI	GCNGC	1 cut(s)	877
BmcAI	AGTACT	2 cut(s)	493, 1069
BmgBI	CACGTC	1 cut(s)	843
BmiI	GGNNCC	2 cut(s)	333, 469
BmsI	GCATC	1 cut(s)	1004
Bpu10I	CCTNAGC	1 cut(s)	313
Bsa29I	ATCGAT	1 cut(s)	578
BsaAI	YACGTR	1 cut(s)	799
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	1 cut(s)	527
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bse118I	RCCGGY	1 cut(s)	527
Bse3DI	GCAATG	2 cut(s)	540, 558
BseCI	ATCGAT	1 cut(s)	578
BseDI	CCNNGG	1 cut(s)	351
BseMI	GCAATG	2 cut(s)	540, 558
BseRI	GAGGAG	1 cut(s)	727
BseXI	GCAGC	1 cut(s)	862
Bsh1236I	CGCG	2 cut(s)	125, 173
BshFI	GGCC	1 cut(s)	199
BshTI	ACCGGT	1 cut(s)	527
BshVI	ATCGAT	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	719
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	3 cut(s)	265, 966, 1057
BsmAI	GTCTC	2 cut(s)	368, 821
BsmBI	CGTCTC	1 cut(s)	368
BsmFI	GGGAC	3 cut(s)	265, 966, 1057
BsnI	GGCC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	719
Bsp143I	GATC	9 cut(s)	51, 216, 561, 579, 657, 702, 782, 932, 1021
Bsp68I	TCGCGA	2 cut(s)	125, 173
BspACI	CCGC	3 cut(s)	471, 820, 833
BspANI	GGCC	1 cut(s)	199
BspDI	ATCGAT	1 cut(s)	578
BspFNI	CGCG	2 cut(s)	125, 173
BspHI	TCATGA	1 cut(s)	901
BspLI	GGNNCC	2 cut(s)	333, 469
BspPI	GGATC	4 cut(s)	224, 652, 790, 940
BspQI	GCTCTTC	2 cut(s)	249, 397
BsrDI	GCAATG	2 cut(s)	540, 558
BsrFI	RCCGGY	1 cut(s)	527
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	9 cut(s)	51, 216, 561, 579, 657, 702, 782, 932, 1021
BssNAI	GTATAC	1 cut(s)	294
BssSI	CACGAG	1 cut(s)	646
BssT1I	CCWWGG	1 cut(s)	351
Bst1107I	GTATAC	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	646
Bst4CI	ACNGT	3 cut(s)	116, 491, 917
Bst6I	CTCTTC	3 cut(s)	236, 249, 397
BstBAI	YACGTR	1 cut(s)	799
BstDEI	CTNAG	1 cut(s)	313
BstFNI	CGCG	2 cut(s)	125, 173
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	9 cut(s)	54, 219, 564, 582, 660, 705, 785, 935, 1024
BstMAI	GTCTC	2 cut(s)	368, 821
BstMBI	GATC	9 cut(s)	51, 216, 561, 579, 657, 702, 782, 932, 1021
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	144
BstUI	CGCG	2 cut(s)	125, 173
BstV1I	GCAGC	1 cut(s)	862
BstX2I	RGATCY	2 cut(s)	216, 1021
BstYI	RGATCY	2 cut(s)	216, 1021
BstZ17I	GTATAC	1 cut(s)	294
Bsu15I	ATCGAT	1 cut(s)	578
BsuRI	GGCC	1 cut(s)	199
BsuTUI	ATCGAT	1 cut(s)	578
BtrI	CACGTC	1 cut(s)	843
BtsIMutI	CAGTG	1 cut(s)	1005
BtuMI	TCGCGA	2 cut(s)	125, 173
CciI	TCATGA	1 cut(s)	901
CfoI	GCGC	1 cut(s)	242
Cfr10I	RCCGGY	1 cut(s)	527
ClaI	ATCGAT	1 cut(s)	578
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	3 cut(s)	492, 651, 1068
CspAI	ACCGGT	1 cut(s)	527
CviAII	CATG	4 cut(s)	49, 328, 565, 902
CviQI	GTAC	3 cut(s)	492, 651, 1068
DdeI	CTNAG	1 cut(s)	313
DpnI	GATC	9 cut(s)	53, 218, 563, 581, 659, 704, 784, 934, 1023
DpnII	GATC	9 cut(s)	51, 216, 561, 579, 657, 702, 782, 932, 1021
Eam1104I	CTCTTC	3 cut(s)	236, 249, 397
EarI	CTCTTC	3 cut(s)	236, 249, 397
EciI	GGCGGA	1 cut(s)	809
Eco130I	CCWWGG	1 cut(s)	351
Eco47III	AGCGCT	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	368
FaeI	CATG	4 cut(s)	52, 331, 568, 905
FaqI	GGGAC	3 cut(s)	265, 966, 1057
FatI	CATG	4 cut(s)	48, 327, 564, 901
FauNDI	CATATG	1 cut(s)	498
FbaI	TGATCA	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	293
Fnu4HI	GCNGC	1 cut(s)	876
Fsp4HI	GCNGC	1 cut(s)	876
FspBI	CTAG	2 cut(s)	287, 416
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	1 cut(s)	876
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	1 cut(s)	528
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	4 cut(s)	52, 331, 568, 905
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HinfI	GANTC	3 cut(s)	521, 679, 862
HpaII	CCGG	1 cut(s)	528
Hpy166II	GTNNAC	4 cut(s)	76, 227, 294, 840
Hpy188I	TCNGA	1 cut(s)	709
Hpy188III	TCNNGA	9 cut(s)	88, 124, 160, 172, 388, 482, 786, 902, 1025
Hpy8I	GTNNAC	4 cut(s)	76, 227, 294, 840
Hpy99I	CGWCG	1 cut(s)	847
HpyAV	CCTTC	5 cut(s)	22, 98, 345, 908, 1028
HpyCH4III	ACNGT	3 cut(s)	116, 491, 917
HpyCH4IV	ACGT	4 cut(s)	78, 396, 798, 842
HpyCH4V	TGCA	4 cut(s)	265, 533, 995, 1088
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	1 cut(s)	313
HpySE526I	ACGT	4 cut(s)	78, 396, 798, 842
Hsp92II	CATG	4 cut(s)	52, 331, 568, 905
HspAI	GCGC	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	9 cut(s)	51, 216, 561, 579, 657, 702, 782, 932, 1021
LguI	GCTCTTC	2 cut(s)	249, 397
LmnI	GCTCC	2 cut(s)	440, 714
LpnPI	CCDG	4 cut(s)	181, 233, 541, 554
Lsp1109I	GCAGC	1 cut(s)	862
LweI	GCATC	1 cut(s)	1004
MaeI	CTAG	2 cut(s)	287, 416
MaeII	ACGT	4 cut(s)	78, 396, 798, 842
MaeIII	GTNAC	2 cut(s)	340, 1000
MalI	GATC	9 cut(s)	53, 218, 563, 581, 659, 704, 784, 934, 1023
MboI	GATC	9 cut(s)	51, 216, 561, 579, 657, 702, 782, 932, 1021
MboII	GAAGA	5 cut(s)	103, 223, 236, 291, 414
MflI	RGATCY	2 cut(s)	216, 1021
MhlI	GDGCHC	1 cut(s)	719
MmeI	TCCRAC	1 cut(s)	760
MnlI	CCTC	3 cut(s)	671, 705, 821
MroXI	GAANNNNTTC	1 cut(s)	520
MseI	TTAA	4 cut(s)	65, 111, 476, 735
MslI	CAYNNNNRTG	4 cut(s)	544, 722, 724, 947
MspI	CCGG	1 cut(s)	528
MvnI	CGCG	2 cut(s)	125, 173
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeI	CATATG	1 cut(s)	498
NdeII	GATC	9 cut(s)	51, 216, 561, 579, 657, 702, 782, 932, 1021
NlaIII	CATG	4 cut(s)	52, 331, 568, 905
NlaIV	GGNNCC	2 cut(s)	333, 469
NmeAIII	GCCGAG	1 cut(s)	650
NmuCI	GTSAC	1 cut(s)	1000
NruI	TCGCGA	2 cut(s)	125, 173
OliI	CACNNNNGTG	1 cut(s)	544
PagI	TCATGA	1 cut(s)	901
PciSI	GCTCTTC	2 cut(s)	249, 397
PcsI	WCGNNNNNNNCGW	1 cut(s)	653
PdmI	GAANNNNTTC	1 cut(s)	520
PfeI	GAWTC	3 cut(s)	521, 679, 862
PinAI	ACCGGT	1 cut(s)	527
PkrI	GCNGC	1 cut(s)	877
Ppu21I	YACGTR	1 cut(s)	799
PsiI	TTATAA	1 cut(s)	462
Psp1406I	AACGTT	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	333, 469
PsuI	RGATCY	2 cut(s)	216, 1021
RruI	TCGCGA	2 cut(s)	125, 173
RsaI	GTAC	3 cut(s)	493, 652, 1069
RsaNI	GTAC	3 cut(s)	492, 651, 1068
RseI	CAYNNNNRTG	4 cut(s)	544, 722, 724, 947
SapI	GCTCTTC	2 cut(s)	249, 397
SaqAI	TTAA	4 cut(s)	65, 111, 476, 735
SatI	GCNGC	1 cut(s)	876
Sau3AI	GATC	9 cut(s)	51, 216, 561, 579, 657, 702, 782, 932, 1021
ScaI	AGTACT	2 cut(s)	493, 1069
SduI	GDGCHC	1 cut(s)	719
SfaNI	GCATC	1 cut(s)	1004
SfcI	CTRYAG	1 cut(s)	144
SgrAI	CRCCGGYG	1 cut(s)	527
SmiMI	CAYNNNNRTG	4 cut(s)	544, 722, 724, 947
SsiI	CCGC	3 cut(s)	471, 820, 833
SspMI	CTAG	2 cut(s)	287, 416
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	3 cut(s)	116, 491, 917
TaiI	ACGT	4 cut(s)	81, 399, 801, 845
TaqI	TCGA	4 cut(s)	481, 560, 578, 845
TatI	WGTACW	2 cut(s)	491, 1067
TfiI	GAWTC	3 cut(s)	521, 679, 862
Tru1I	TTAA	4 cut(s)	65, 111, 476, 735
Tru9I	TTAA	4 cut(s)	65, 111, 476, 735
TscAI	CASTG	1 cut(s)	1005
TseFI	GTSAC	1 cut(s)	1000
TseI	GCWGC	1 cut(s)	875
Tsp45I	GTSAC	1 cut(s)	1000
TspDTI	ATGAA	4 cut(s)	117, 592, 841, 890
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	1 cut(s)	1005
XmiI	GTMKAC	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	520
XspI	CTAG	2 cut(s)	287, 416
ZrmI	AGTACT	2 cut(s)	493, 1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.