Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000665

Physical Location & Seq

Genomic Coordinates Reverse (-)

55463819 .. 55466325

Gene Structure 2507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG283200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTTTCTTCTTGGACTCCAATACATCTCAGCTACATATTCTTCTGCCTTCATCAACATGGCGCATGTTAACACTTACCTGTTGGCACTACCATTTGGTCCAGAGAGAGTGAGCATTAGGAGCAAGGGAGGCAGAGCTAAGATATTGAGTGCTTTGATATGCATTGGTGGAGCTTTGTCATTGACCTTATACAAAGGAATGCCACTAACCAACCAACACTCACATGCCATAGCTGAAATTGAAAACCATGACTATATACTGAGTGTAGAAAAGAAGAGAGTGAGGTGGGCACTTGGTTCAGTGTTTTTGGCAGCAGGTTGCATGTTGTGGGCTTCATGGTTTCTCATACAATCCAAGATTGGGAAGAGCTACCCATTTCAGTACTCTAGCACAGCCATCTTGTCCTTCTTTGGTGTCATTCAGTCAGCCATCTTGACCTTGCTTACTGAGAGAAGCATCAACATGTCAATGTGGGTTTTGAAGGGGAAGTTGGAAATACTGAGTGTCACATATGCTTGTGGTCGTTCTGTCCTAGTCATAGTTGGAATGTATGTTCTACGGTGGGGGAAAAGCAATGATGCAAAGGAAATTGTGGTGAAGCAGACACTAGCAGCTGAAGAAGGTGCATATGTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

212

Amino Acids

23.39

Weight (kDa)

9.54

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca	FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica	MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica	Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis	pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis	RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata	RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora	Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii	Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa	Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha	Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana	Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	636
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	360
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	2 cut(s)	242, 481
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AloI	GAACNNNNNNTCC	2 cut(s)	537, 569
AluBI	AGCT	6 cut(s)	32, 137, 173, 233, 369, 614
AluI	AGCT	6 cut(s)	32, 137, 173, 233, 369, 614
ApeKI	GCWGC	2 cut(s)	311, 611
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	607
AvaII	GGWCC	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	323, 623
BccI	CCATC	2 cut(s)	404, 437
BfaI	CTAG	3 cut(s)	387, 533, 608
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	2 cut(s)	312, 612
BlsI	GCNGC	2 cut(s)	313, 613
BmcAI	AGTACT	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmsI	GCATC	2 cut(s)	465, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse3DI	GCAATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMI	GCAATG	1 cut(s)	580
BseMII	CTCAG	4 cut(s)	42, 251, 438, 491
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	2 cut(s)	323, 623
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	617
BsmI	GAATGC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	292
BspCNI	CTCAG	4 cut(s)	41, 252, 439, 492
BspMI	ACCTGC	1 cut(s)	305
BspQI	GCTCTTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	580
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	2 cut(s)	269, 359
BstDEI	CTNAG	5 cut(s)	28, 138, 260, 447, 500
BstHHI	GCGC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 129
BstNSI	RCATGY	4 cut(s)	68, 227, 325, 466
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	2 cut(s)	323, 623
BtsIMutI	CAGTG	1 cut(s)	306
BveI	ACCTGC	1 cut(s)	305
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	7 cut(s)	58, 65, 224, 248, 322, 336, 463
CviJI	RGCY	9 cut(s)	32, 137, 173, 233, 332, 369, 395, 428, 614
CviKI_1	RGCY	9 cut(s)	32, 137, 173, 233, 332, 369, 395, 428, 614
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	5 cut(s)	28, 138, 260, 447, 500
Eam1104I	CTCTTC	2 cut(s)	269, 359
EarI	CTCTTC	2 cut(s)	269, 359
Eco47I	GGWCC	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	636
EcoT22I	ATGCAT	1 cut(s)	164
FaeI	CATG	7 cut(s)	61, 68, 227, 251, 325, 339, 466
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	7 cut(s)	57, 64, 223, 247, 321, 335, 462
FauNDI	CATATG	2 cut(s)	511, 628
Fnu4HI	GCNGC	2 cut(s)	312, 612
Fsp4HI	GCNGC	2 cut(s)	312, 612
FspBI	CTAG	3 cut(s)	387, 533, 608
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	2 cut(s)	312, 612
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	7 cut(s)	61, 68, 227, 251, 325, 339, 466
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	15
HpaI	GTTAAC	1 cut(s)	70
HphI	GGTGA	1 cut(s)	607
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188III	TCNNGA	2 cut(s)	101, 433
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	4 cut(s)	58, 415, 475, 614
HpyCH4III	ACNGT	1 cut(s)	561
HpyCH4V	TGCA	4 cut(s)	162, 321, 581, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 129
HpyF3I	CTNAG	5 cut(s)	28, 138, 260, 447, 500
Hsp92II	CATG	7 cut(s)	61, 68, 227, 251, 325, 339, 466
HspAI	GCGC	1 cut(s)	62
KspAI	GTTAAC	1 cut(s)	70
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	2 cut(s)	120, 170
LpnPI	CCDG	3 cut(s)	92, 114, 300
Lsp1109I	GCAGC	2 cut(s)	323, 623
LweI	GCATC	2 cut(s)	465, 568
MaeI	CTAG	3 cut(s)	387, 533, 608
MaeIII	GTNAC	1 cut(s)	505
MboII	GAAGA	4 cut(s)	33, 286, 376, 629
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	2 cut(s)	237, 588
MlyI	GAGTC	1 cut(s)	9
MmeI	TCCRAC	2 cut(s)	471, 523
MnlI	CCTC	2 cut(s)	122, 276
Mph1103I	ATGCAT	1 cut(s)	164
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	4 cut(s)	56, 222, 461, 467
MspA1I	CMGCKG	1 cut(s)	614
Mva1269I	GAATGC	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	120, 129
NdeI	CATATG	2 cut(s)	511, 628
NlaIII	CATG	7 cut(s)	61, 68, 227, 251, 325, 339, 466
NmuCI	GTSAC	1 cut(s)	505
NsiI	ATGCAT	1 cut(s)	164
NspI	RCATGY	4 cut(s)	68, 227, 325, 466
PciI	ACATGT	1 cut(s)	462
PciSI	GCTCTTC	1 cut(s)	359
PctI	GAATGC	1 cut(s)	204
PkrI	GCNGC	2 cut(s)	313, 613
PleI	GAGTC	1 cut(s)	9
PpsI	GAGTC	1 cut(s)	9
PscI	ACATGT	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	614
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	4 cut(s)	56, 222, 461, 467
SapI	GCTCTTC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	2 cut(s)	312, 612
Sau96I	GGNCC	1 cut(s)	98
ScaI	AGTACT	1 cut(s)	383
SchI	GAGTC	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	292
SfaNI	GCATC	2 cut(s)	465, 568
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	4 cut(s)	56, 222, 461, 467
Sse9I	AATT	2 cut(s)	237, 588
SspMI	CTAG	3 cut(s)	387, 533, 608
TaaI	ACNGT	1 cut(s)	561
TasI	AATT	2 cut(s)	237, 588
TatI	WGTACW	1 cut(s)	381
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	2 cut(s)	311, 611
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	2 cut(s)	40, 324
TspRI	CASTG	1 cut(s)	306
VpaK11BI	GGWCC	1 cut(s)	98
XceI	RCATGY	4 cut(s)	68, 227, 325, 466
XspI	CTAG	3 cut(s)	387, 533, 608
ZrmI	AGTACT	1 cut(s)	383
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.