Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000665

Physical Location & Seq

Genomic Coordinates Reverse (-)

21041957 .. 21043884

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1095400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGTACTTACAATGCATTTGATTAAGGTTTTTCCGATTTATTTTTGTATGTTGACTTTCACACAATACTTAATTTTTCTTGGACTTCAACACACTTTTGCAACATATTCCTGTTCATTCATCAGCATGGTGCCTGTCAACACTTTCCTCTTGGCTCTACCATTTGGATTCATTTATGGACTTGATTTCAGACTAGAGAAAGTGAACATAAAGAACAAGGGTGGGATCGCTAAAATCCTTGGTGCTATAATATGTATTGGTGGAGCTGTATCATTGTTCTTGTACAAAGGAATGCCACTAACCAACCAACATTCAGAATCCACACTTCAAATGCAAAACCATGCCAATACACTGGCTTCTTCATCAGCCAAGAAGAATGAGAGGTGGGTTGTTGGTTCAGCATTTTTGGCATCAGGCTGCCTCTTGTGGCCTTCATGGTTCCTCGTCCAAGAAAAGATCGGCAAGAGCTACCCTTTTCAGTACTCTAGCACCGGATTATGTCCTTTTTCAGCGCCATTCAATCAGATCTTGTGCTTCATCACGCGAAGGCACATTGTCATGTCAATAATTCGTCACCAACTAATTAGGGTTTCATGTGTATTTATGTTGCACGGAGTTGTAGGATCAGGGTTGTGCTACGTAGGGATGTCATGGTGTGTGAAACAAAAGGGTGCACTCTTCACGGTAGCATTTACCCCCGCCACCCAGATATTTGTGGCTATGTTGGACTTCTCTTTCTTGCATGAAAAAATTTACCTCGGAAGCGTGGTGGGATCTGTTATTGTCATAACTGGCATGTACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

269

Amino Acids

29.89

Weight (kDa)

9.4

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	133 - 268	4.4e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca	FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica	MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica	Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis	pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis	RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata	RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora	Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii	Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa	Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha	Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana	Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccII	CGCG	1 cut(s)	544
AciI	CCGC	1 cut(s)	699
AclWI	GGATC	3 cut(s)	233, 631, 781
AcsI	RAATTY	1 cut(s)	750
AfaI	GTAC	4 cut(s)	6, 284, 482, 800
AgsI	TTSAA	3 cut(s)	89, 329, 520
AluBI	AGCT	2 cut(s)	266, 468
AluI	AGCT	2 cut(s)	266, 468
Alw21I	GWGCWC	1 cut(s)	676
Alw44I	GTGCAC	1 cut(s)	672
AlwI	GGATC	3 cut(s)	233, 631, 781
AoxI	GGCC	1 cut(s)	428
ApaLI	GTGCAC	1 cut(s)	672
ApeKI	GCWGC	1 cut(s)	417
ApoI	RAATTY	1 cut(s)	750
AspLEI	GCGC	1 cut(s)	514
AsuHPI	GGTGA	1 cut(s)	566
BaeGI	GKGCMC	1 cut(s)	676
BanI	GGYRCC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	676
BbvI	GCAGC	1 cut(s)	404
BfaI	CTAG	2 cut(s)	194, 486
BfoI	RGCGCY	1 cut(s)	515
BglII	AGATCT	1 cut(s)	525
BisI	GCNGC	1 cut(s)	418
BlsI	GCNGC	1 cut(s)	419
BmcAI	AGTACT	1 cut(s)	482
BmiI	GGNNCC	2 cut(s)	132, 440
BmsI	GCATC	1 cut(s)	419
BsaAI	YACGTR	1 cut(s)	640
BsaJI	CCNNGG	2 cut(s)	238, 757
BsaWI	WCCGGW	1 cut(s)	491
Bse1I	ACTGG	2 cut(s)	357, 796
BseDI	CCNNGG	2 cut(s)	238, 757
BseGI	GGATG	1 cut(s)	651
BseNI	ACTGG	2 cut(s)	357, 796
BseSI	GKGCMC	1 cut(s)	676
BseXI	GCAGC	1 cut(s)	404
Bsh1236I	CGCG	1 cut(s)	544
BshFI	GGCC	1 cut(s)	430
BshNI	GGYRCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	676
BsiSI	CCGG	1 cut(s)	492
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	676
Bsp1407I	TGTACA	2 cut(s)	282, 798
Bsp143I	GATC	5 cut(s)	225, 456, 525, 623, 773
BspACI	CCGC	1 cut(s)	699
BspANI	GGCC	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	544
BspLI	GGNNCC	2 cut(s)	132, 440
BspPI	GGATC	3 cut(s)	233, 631, 781
BspT107I	GGYRCC	1 cut(s)	130
BsrGI	TGTACA	2 cut(s)	282, 798
BsrI	ACTGG	2 cut(s)	357, 796
BssECI	CCNNGG	2 cut(s)	238, 757
BssMI	GATC	5 cut(s)	225, 456, 525, 623, 773
BssT1I	CCWWGG	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	685
Bst6I	CTCTTC	1 cut(s)	683
BstAUI	TGTACA	2 cut(s)	282, 798
BstBAI	YACGTR	1 cut(s)	640
BstF5I	GGATG	1 cut(s)	651
BstFNI	CGCG	1 cut(s)	544
BstH2I	RGCGCY	1 cut(s)	515
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	5 cut(s)	228, 459, 528, 626, 776
BstMBI	GATC	5 cut(s)	225, 456, 525, 623, 773
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	799
BstSLI	GKGCMC	1 cut(s)	676
BstSNI	TACGTA	1 cut(s)	640
BstUI	CGCG	1 cut(s)	544
BstV1I	GCAGC	1 cut(s)	404
BstX2I	RGATCY	2 cut(s)	525, 773
BstXI	CCANNNNNNTGG	1 cut(s)	352
BstYI	RGATCY	2 cut(s)	525, 773
BsuRI	GGCC	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	651
BtsIMutI	CAGTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	514
Csp6I	GTAC	4 cut(s)	5, 283, 481, 799
CviAII	CATG	8 cut(s)	127, 341, 435, 559, 594, 651, 743, 796
CviJI	RGCY	8 cut(s)	155, 266, 356, 368, 417, 430, 468, 719
CviKI_1	RGCY	8 cut(s)	155, 266, 356, 368, 417, 430, 468, 719
CviQI	GTAC	4 cut(s)	5, 283, 481, 799
DpnI	GATC	5 cut(s)	227, 458, 527, 625, 775
DpnII	GATC	5 cut(s)	225, 456, 525, 623, 773
Eam1104I	CTCTTC	1 cut(s)	683
EarI	CTCTTC	1 cut(s)	683
Eco105I	TACGTA	1 cut(s)	640
Eco130I	CCWWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	8 cut(s)	130, 344, 438, 562, 597, 654, 746, 799
FatI	CATG	8 cut(s)	126, 340, 434, 558, 593, 650, 742, 795
FauI	CCCGC	1 cut(s)	706
Fnu4HI	GCNGC	1 cut(s)	418
FokI	GGATG	1 cut(s)	658
Fsp4HI	GCNGC	1 cut(s)	418
FspBI	CTAG	2 cut(s)	194, 486
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	1 cut(s)	418
HaeII	RGCGCY	1 cut(s)	515
HaeIII	GGCC	1 cut(s)	430
HapII	CCGG	1 cut(s)	492
HhaI	GCGC	1 cut(s)	514
Hin1II	CATG	8 cut(s)	130, 344, 438, 562, 597, 654, 746, 799
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	2 cut(s)	54, 139
HindII	GTYRAC	2 cut(s)	54, 139
HinfI	GANTC	2 cut(s)	168, 317
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	4 cut(s)	54, 139, 205, 674
Hpy188I	TCNGA	5 cut(s)	36, 191, 316, 525, 761
Hpy8I	GTNNAC	4 cut(s)	54, 139, 205, 674
HpyAV	CCTTC	2 cut(s)	441, 540
HpyCH4III	ACNGT	1 cut(s)	685
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	6 cut(s)	16, 101, 334, 610, 674, 742
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpySE526I	ACGT	1 cut(s)	639
Hsp92II	CATG	8 cut(s)	130, 344, 438, 562, 597, 654, 746, 799
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	5 cut(s)	225, 456, 525, 623, 773
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	8 cut(s)	124, 147, 338, 399, 505, 612, 719, 777
Lsp1109I	GCAGC	1 cut(s)	404
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	2 cut(s)	194, 486
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	5 cut(s)	227, 458, 527, 625, 775
MboI	GATC	5 cut(s)	225, 456, 525, 623, 773
MboII	GAAGA	3 cut(s)	351, 385, 670
MflI	RGATCY	2 cut(s)	525, 773
MhlI	GDGCHC	1 cut(s)	676
MluCI	AATT	4 cut(s)	72, 567, 582, 750
MmeI	TCCRAC	1 cut(s)	705
MnlI	CCTC	5 cut(s)	158, 375, 431, 452, 767
Mph1103I	ATGCAT	1 cut(s)	18
MseI	TTAA	3 cut(s)	24, 71, 805
MslI	CAYNNNNRTG	2 cut(s)	125, 557
MspI	CCGG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	297
MvnI	CGCG	1 cut(s)	544
MwoI	GCNNNNNNNGC	1 cut(s)	407
NdeII	GATC	5 cut(s)	225, 456, 525, 623, 773
NlaIII	CATG	8 cut(s)	130, 344, 438, 562, 597, 654, 746, 799
NlaIV	GGNNCC	2 cut(s)	132, 440
NmuCI	GTSAC	1 cut(s)	572
NsiI	ATGCAT	1 cut(s)	18
NspI	RCATGY	1 cut(s)	799
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	168, 317
PkrI	GCNGC	1 cut(s)	419
Ppu21I	YACGTR	1 cut(s)	640
PspN4I	GGNNCC	2 cut(s)	132, 440
PsuI	RGATCY	2 cut(s)	525, 773
RsaI	GTAC	4 cut(s)	6, 284, 482, 800
RsaNI	GTAC	4 cut(s)	5, 283, 481, 799
RseI	CAYNNNNRTG	2 cut(s)	125, 557
SaqAI	TTAA	3 cut(s)	24, 71, 805
SatI	GCNGC	1 cut(s)	418
Sau3AI	GATC	5 cut(s)	225, 456, 525, 623, 773
ScaI	AGTACT	1 cut(s)	482
SduI	GDGCHC	1 cut(s)	676
SetI	ASST	6 cut(s)	30, 268, 386, 470, 642, 759
SfaNI	GCATC	1 cut(s)	419
SmiMI	CAYNNNNRTG	2 cut(s)	125, 557
SnaBI	TACGTA	1 cut(s)	640
Sse9I	AATT	4 cut(s)	72, 567, 582, 750
SsiI	CCGC	1 cut(s)	699
SspMI	CTAG	2 cut(s)	194, 486
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	685
TaiI	ACGT	1 cut(s)	642
TasI	AATT	4 cut(s)	72, 567, 582, 750
TatI	WGTACW	3 cut(s)	282, 480, 798
TfiI	GAWTC	2 cut(s)	168, 317
Tru1I	TTAA	3 cut(s)	24, 71, 805
Tru9I	TTAA	3 cut(s)	24, 71, 805
TscAI	CASTG	1 cut(s)	357
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	1 cut(s)	417
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	8 cut(s)	105, 109, 160, 351, 423, 526, 582, 759
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	1 cut(s)	357
VneI	GTGCAC	1 cut(s)	672
XapI	RAATTY	1 cut(s)	750
XceI	RCATGY	1 cut(s)	799
XspI	CTAG	2 cut(s)	194, 486
ZrmI	AGTACT	1 cut(s)	482
Zsp2I	ATGCAT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.