Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000665

Physical Location & Seq

Genomic Coordinates Reverse (-)

21172520 .. 21174571

Gene Structure 2052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1097400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAATTGCTGGGGAAAATGGAAGTCTATTTTTGTCATGCTGGTCATTAACCTTGCATTTGCTATAGTAAATATTCTGCTTAAGAAGACTATTGATGGTGGATTAGGCGGTTTGATTATTGTTACTTATCGACAGTCGATTTCTGCTGTTTTCTTGACACCAATTGCTTTCTTTTGGGAGAGGAAAAGTAGAACAGAGCTTACATCTCAAATCTTATGCCACCTTTTCATCAGTGCTCTAATTGGGATAACTTTCACGCATTACTTATTTCTTCTTGGACTTCAGTACACCTCTGCGACATATTCCTGTGCATTCATCAACATGGTGCCCGTCAACACTTTCCTCTTGGCTCTACCATTTGGACTAGAGAAAGTGAACATAAAGAAAAAGGGTGGGATCGCTAAAGTCCTCGGTGCCCTAATATGTATTGGTGGAGCTGTGTCATTGATCTTGTACAAAGGAATGCCATTAACCAACCAACATTCAGAATCTACAGTTCAAATGCAAAACCATGCCAATACAACGACTTTTTCATCAGCCAAGAAGAGTGATAGGTGGGCTGTGGGTTCAGTATTTTTGGCATCAGGCTGCCTCTTGTGGTCTTCATGGTTCCTCATCCAAGCAAAGATCGGCAAGAGCTACCCTTTTCAGTACGCTAGCACCGCGATTTTGTCCTTCTTCAGCGTCATTCAATCCGCCATCTTGTGCTTCATTACGCAGAGGCACATCGCCATGTCAATGTGGATTCTCAAGGGAAAGTTGGAGATCTTAAGTGTCGCATATACTGGAATAGTAGGATCAGGGTTGTGCTACGTAGGGATGTCATGGTGTGTGAAACAAAAGGGTGCACTCTTCACAGCAGCATTTACCCCCGCCACCCAGATGTTCGTGGCTATGTTGGAATTCTCTTTCTTGCACGGACAAATTTACCTCGGAAGCGTGGTGGGATCTGTCACTGTCATAACTGGCATGTACATTTTACTGTGGGGTAAAAACAAGGATCAAAAGGAAATGATGATCAAACAGACACAAGCAGCTGATCAAGATCAAGAAAGTGGTCCAATGCCACTAGGCATGCCCCTTGATGTAAATAAAGGACAATACTTGGTTACTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

373

Amino Acids

40.92

Weight (kDa)

9.46

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	8 - 143	2.5e-12	EamA-like transporter family
EamA	PF00892	189 - 328	2.5e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca	FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica	MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica	Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis	pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis	RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata	RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora	Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii	Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa	Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha	Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana	Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	325, 413
AccII	CGCG	1 cut(s)	665
AciI	CCGC	4 cut(s)	108, 663, 696, 873
AclWI	GGATC	4 cut(s)	404, 805, 955, 1008
AcsI	RAATTY	2 cut(s)	902, 924
AcuI	CTGAAG	2 cut(s)	266, 664
AfaI	GTAC	4 cut(s)	287, 455, 653, 974
AflII	CTTAAG	2 cut(s)	80, 769
AgsI	TTSAA	2 cut(s)	500, 692
AluBI	AGCT	4 cut(s)	199, 437, 639, 1037
AluI	AGCT	4 cut(s)	199, 437, 639, 1037
Alw21I	GWGCWC	2 cut(s)	238, 850
Alw44I	GTGCAC	1 cut(s)	846
AlwI	GGATC	4 cut(s)	404, 805, 955, 1008
ApaLI	GTGCAC	1 cut(s)	846
ApeKI	GCWGC	3 cut(s)	588, 860, 1034
ApoI	RAATTY	2 cut(s)	902, 924
AspS9I	GGNCC	1 cut(s)	1058
AsuNHI	GCTAGC	1 cut(s)	656
AvaII	GGWCC	1 cut(s)	1058
BaeGI	GKGCMC	3 cut(s)	330, 418, 850
BanI	GGYRCC	2 cut(s)	325, 413
BbsI	GAAGAC	2 cut(s)	92, 594
Bbv12I	GWGCWC	2 cut(s)	238, 850
BbvI	GCAGC	3 cut(s)	575, 872, 1046
BccI	CCATC	2 cut(s)	89, 707
BclI	TGATCA	2 cut(s)	1017, 1039
BfaI	CTAG	4 cut(s)	365, 657, 1070, 1117
BfmI	CTRYAG	2 cut(s)	63, 492
BfrI	CTTAAG	2 cut(s)	80, 769
BglII	AGATCT	1 cut(s)	765
BisI	GCNGC	3 cut(s)	589, 861, 1035
BlsI	GCNGC	3 cut(s)	590, 862, 1036
Bme18I	GGWCC	1 cut(s)	1058
BmgT120I	GGNCC	1 cut(s)	1058
BmiI	GGNNCC	3 cut(s)	327, 415, 611
BmsI	GCATC	1 cut(s)	590
BmtI	GCTAGC	1 cut(s)	660
BpiI	GAAGAC	2 cut(s)	92, 594
BpuEI	CTTGAG	1 cut(s)	734
BsaAI	YACGTR	1 cut(s)	814
BsaBI	GATNNNNATC	1 cut(s)	1044
BsaJI	CCNNGG	2 cut(s)	409, 931
Bse1I	ACTGG	3 cut(s)	790, 970, 1117
Bse8I	GATNNNNATC	1 cut(s)	1044
BseDI	CCNNGG	2 cut(s)	409, 931
BseGI	GGATG	2 cut(s)	615, 825
BseJI	GATNNNNATC	1 cut(s)	1044
BseNI	ACTGG	3 cut(s)	790, 970, 1117
BseSI	GKGCMC	3 cut(s)	330, 418, 850
BseXI	GCAGC	3 cut(s)	575, 872, 1046
BseYI	CCCAGC	1 cut(s)	9
Bsh1236I	CGCG	1 cut(s)	665
BshNI	GGYRCC	2 cut(s)	325, 413
BsiHKAI	GWGCWC	2 cut(s)	238, 850
BsmI	GAATGC	2 cut(s)	311, 468
Bsp1286I	GDGCHC	4 cut(s)	238, 330, 418, 850
Bsp1407I	TGTACA	2 cut(s)	453, 972
BspACI	CCGC	4 cut(s)	108, 663, 696, 873
BspFNI	CGCG	1 cut(s)	665
BspLI	GGNNCC	3 cut(s)	327, 415, 611
BspOI	GCTAGC	1 cut(s)	660
BspPI	GGATC	4 cut(s)	404, 805, 955, 1008
BspT107I	GGYRCC	2 cut(s)	325, 413
BspTI	CTTAAG	2 cut(s)	80, 769
BsrGI	TGTACA	2 cut(s)	453, 972
BsrI	ACTGG	3 cut(s)	790, 970, 1117
BssECI	CCNNGG	2 cut(s)	409, 931
Bst4CI	ACNGT	4 cut(s)	135, 496, 958, 984
Bst6I	CTCTTC	2 cut(s)	539, 857
BstAFI	CTTAAG	2 cut(s)	80, 769
BstAUI	TGTACA	2 cut(s)	453, 972
BstBAI	YACGTR	1 cut(s)	814
BstC8I	GCNNGC	2 cut(s)	658, 1076
BstF5I	GGATG	2 cut(s)	615, 825
BstFNI	CGCG	1 cut(s)	665
BstMWI	GCNNNNNNNGC	1 cut(s)	662
BstNSI	RCATGY	2 cut(s)	973, 1078
BstSFI	CTRYAG	2 cut(s)	63, 492
BstSLI	GKGCMC	3 cut(s)	330, 418, 850
BstSNI	TACGTA	1 cut(s)	814
BstUI	CGCG	1 cut(s)	665
BstV1I	GCAGC	3 cut(s)	575, 872, 1046
BstV2I	GAAGAC	2 cut(s)	92, 594
BstX2I	RGATCY	2 cut(s)	765, 947
BstYI	RGATCY	2 cut(s)	765, 947
BtgZI	GCGATG	1 cut(s)	712
BtsCI	GGATG	2 cut(s)	615, 825
BtsIMutI	CAGTG	2 cut(s)	238, 954
Cac8I	GCNNGC	2 cut(s)	658, 1076
Cfr13I	GGNCC	1 cut(s)	1058
CseI	GACGC	1 cut(s)	673
Csp6I	GTAC	4 cut(s)	286, 454, 652, 973
CviAII	CATG	8 cut(s)	37, 322, 512, 606, 733, 825, 970, 1075
CviQI	GTAC	4 cut(s)	286, 454, 652, 973
Eam1104I	CTCTTC	2 cut(s)	539, 857
EarI	CTCTTC	2 cut(s)	539, 857
EciI	GGCGGA	1 cut(s)	685
Eco105I	TACGTA	1 cut(s)	814
Eco47I	GGWCC	1 cut(s)	1058
Eco57I	CTGAAG	2 cut(s)	266, 664
EcoRI	GAATTC	1 cut(s)	902
FaeI	CATG	8 cut(s)	40, 325, 515, 609, 736, 828, 973, 1078
FatI	CATG	8 cut(s)	36, 321, 511, 605, 732, 824, 969, 1074
FauI	CCCGC	1 cut(s)	880
FbaI	TGATCA	2 cut(s)	1017, 1039
Fnu4HI	GCNGC	3 cut(s)	589, 861, 1035
FokI	GGATG	2 cut(s)	602, 832
Fsp4HI	GCNGC	3 cut(s)	589, 861, 1035
FspBI	CTAG	4 cut(s)	365, 657, 1070, 1117
GluI	GCNGC	3 cut(s)	589, 861, 1035
GsaI	CCCAGC	1 cut(s)	13
HgaI	GACGC	1 cut(s)	673
Hin1II	CATG	8 cut(s)	40, 325, 515, 609, 736, 828, 973, 1078
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	2 cut(s)	488, 745
Hpy166II	GTNNAC	4 cut(s)	288, 334, 376, 848
Hpy188I	TCNGA	2 cut(s)	487, 935
Hpy188III	TCNNGA	3 cut(s)	154, 1043, 1049
Hpy8I	GTNNAC	4 cut(s)	288, 334, 376, 848
HpyAV	CCTTC	1 cut(s)	685
HpyCH4III	ACNGT	4 cut(s)	135, 496, 958, 984
HpyCH4IV	ACGT	1 cut(s)	813
HpyCH4V	TGCA	5 cut(s)	56, 311, 505, 848, 916
HpyF10VI	GCNNNNNNNGC	1 cut(s)	662
HpySE526I	ACGT	1 cut(s)	813
Hsp92II	CATG	8 cut(s)	40, 325, 515, 609, 736, 828, 973, 1078
Ksp22I	TGATCA	2 cut(s)	1017, 1039
LmnI	GCTCC	1 cut(s)	434
LpnPI	CCDG	8 cut(s)	26, 319, 570, 771, 786, 893, 951, 1098
Lsp1109I	GCAGC	3 cut(s)	575, 872, 1046
LweI	GCATC	1 cut(s)	590
MaeI	CTAG	4 cut(s)	365, 657, 1070, 1117
MaeII	ACGT	1 cut(s)	813
MaeIII	GTNAC	3 cut(s)	121, 952, 1108
MboII	GAAGA	6 cut(s)	97, 263, 556, 594, 670, 844
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	2 cut(s)	765, 947
MhlI	GDGCHC	4 cut(s)	238, 330, 418, 850
MluCI	AATT	5 cut(s)	4, 162, 240, 902, 924
MmeI	TCCRAC	2 cut(s)	741, 879
MnlI	CCTC	8 cut(s)	174, 301, 353, 419, 602, 623, 714, 941
MseI	TTAA	4 cut(s)	48, 81, 470, 770
MslI	CAYNNNNRTG	4 cut(s)	320, 731, 737, 881
MspA1I	CMGCKG	1 cut(s)	1037
MspCI	CTTAAG	2 cut(s)	80, 769
MunI	CAATTG	1 cut(s)	162
Mva1269I	GAATGC	2 cut(s)	311, 468
MvnI	CGCG	1 cut(s)	665
MwoI	GCNNNNNNNGC	1 cut(s)	662
NheI	GCTAGC	1 cut(s)	656
NlaIII	CATG	8 cut(s)	40, 325, 515, 609, 736, 828, 973, 1078
NlaIV	GGNNCC	3 cut(s)	327, 415, 611
NmuCI	GTSAC	1 cut(s)	952
NspI	RCATGY	2 cut(s)	973, 1078
PaeI	GCATGC	1 cut(s)	1078
PctI	GAATGC	2 cut(s)	311, 468
PfeI	GAWTC	2 cut(s)	488, 745
PkrI	GCNGC	3 cut(s)	590, 862, 1036
Ppu21I	YACGTR	1 cut(s)	814
PspFI	CCCAGC	1 cut(s)	9
PspN4I	GGNNCC	3 cut(s)	327, 415, 611
PspPI	GGNCC	1 cut(s)	1058
PsrI	GAACNNNNNNTAC	2 cut(s)	184, 216
PsuI	RGATCY	2 cut(s)	765, 947
PvuII	CAGCTG	1 cut(s)	1037
RsaI	GTAC	4 cut(s)	287, 455, 653, 974
RsaNI	GTAC	4 cut(s)	286, 454, 652, 973
RseI	CAYNNNNRTG	4 cut(s)	320, 731, 737, 881
SaqAI	TTAA	4 cut(s)	48, 81, 470, 770
SatI	GCNGC	3 cut(s)	589, 861, 1035
Sau96I	GGNCC	1 cut(s)	1058
SduI	GDGCHC	4 cut(s)	238, 330, 418, 850
SfaNI	GCATC	1 cut(s)	590
SfcI	CTRYAG	2 cut(s)	63, 492
SinI	GGWCC	1 cut(s)	1058
SmiMI	CAYNNNNRTG	4 cut(s)	320, 731, 737, 881
SmlI	CTYRAG	3 cut(s)	80, 749, 769
SmoI	CTYRAG	3 cut(s)	80, 749, 769
SnaBI	TACGTA	1 cut(s)	814
SphI	GCATGC	1 cut(s)	1078
Sse9I	AATT	5 cut(s)	4, 162, 240, 902, 924
SsiI	CCGC	4 cut(s)	108, 663, 696, 873
SspI	AATATT	1 cut(s)	73
SspMI	CTAG	4 cut(s)	365, 657, 1070, 1117
TaaI	ACNGT	4 cut(s)	135, 496, 958, 984
TaiI	ACGT	1 cut(s)	816
TaqI	TCGA	2 cut(s)	130, 137
TasI	AATT	5 cut(s)	4, 162, 240, 902, 924
TatI	WGTACW	3 cut(s)	285, 453, 972
TfiI	GAWTC	2 cut(s)	488, 745
Tru1I	TTAA	4 cut(s)	48, 81, 470, 770
Tru9I	TTAA	4 cut(s)	48, 81, 470, 770
TscAI	CASTG	2 cut(s)	238, 961
TseFI	GTSAC	1 cut(s)	952
TseI	GCWGC	3 cut(s)	588, 860, 1034
Tsp45I	GTSAC	1 cut(s)	952
TspDTI	ATGAA	6 cut(s)	17, 217, 304, 522, 594, 700
TspGWI	ACGGA	1 cut(s)	933
TspRI	CASTG	2 cut(s)	238, 961
Vha464I	CTTAAG	2 cut(s)	80, 769
VneI	GTGCAC	1 cut(s)	846
VpaK11BI	GGWCC	1 cut(s)	1058
XapI	RAATTY	2 cut(s)	902, 924
XceI	RCATGY	2 cut(s)	973, 1078
XspI	CTAG	4 cut(s)	365, 657, 1070, 1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.