Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000665

Physical Location & Seq

Genomic Coordinates Reverse (-)

6793019 .. 6795688

Gene Structure 2670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG092200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCCGGGGAGATGAAGGGATTCGACGAATGGAATCCTTTCATTGCTATGGTAGCCATAGATTTTGCGTTTGCCATAGTGAATATTCTGCTCAAGAAAGTGCTTGATGAAGGAATGAACCATTTGGTTCTCATTACGTATCGGTTGACAATTTCGACCATCTTCTTGGCTCCAATTAGCTACTTTTGGGAAAGGAATAGTAGACCAAAACTCACACCAAGGATTGTATGTTACCTCTTCTTGAGTGCCATTGTTGGGTCATCCATAACACAGTACTTCTTTCTCCTTGGAATCCAATACACATCTGCTACTTTTGCTTGTGCCTTTGTCAACATGGTGCCTGTGGTCACATTCATCATGGCAGTACCGTTCGGGTTAGAGAAGGTGAACTTGAAATGCAATAGCGGTAGAGCCAAAGTACTCGGTACACTGGTGTGCTTATGCGGTGCAGCGATATTGACACTTTACAAAGGAGTTCCTTTGTTTGATCATTCGAAATCTACGAGTACTCAAATTACCATGATGGATCATGGTATCAAGCTGAGCAGCACCAGAAACAAAGAGAGATGGACTATTGGTTCAATAGCTTTGGTTGCAGGAACACTGTTATGGTCTTCATGGTTTCTAGTGCAATCAAACATAGGCAAGCTATATCCATGTCAGTATTCCAGCACTACTATAATGAACTTCTTTGGTGCCATTCAGTCCGGAATCTTAGGTTTGTGCACTAGTAAGAACCTCTCCGTGTGGGTTCTGAGGGGAAAAGCACAAGTTCTCACTGTCATGTTTGCCGTAAGCATAGTCTTCCTTTTATCGCAGTTAGCGACAATGACAATCCAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

281

Amino Acids

31.15

Weight (kDa)

9.45

Isoelectric Point (pI)

25.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	16 - 154	1.1e-15	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca	FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica	MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica	Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis	pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis	RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata	RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora	Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii	Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa	Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha	Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana	Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	337, 695
AccI	GTMKAC	1 cut(s)	202
AccIII	TCCGGA	1 cut(s)	707
AciI	CCGC	2 cut(s)	405, 444
AclWI	GGATC	1 cut(s)	534
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	5 cut(s)	275, 366, 420, 427, 508
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	2 cut(s)	394, 582
AhlI	ACTAGT	1 cut(s)	728
AleI	CACNNNNGTG	1 cut(s)	433
AloI	GAACNNNNNNTCC	2 cut(s)	562, 594
AluBI	AGCT	4 cut(s)	180, 541, 587, 649
AluI	AGCT	4 cut(s)	180, 541, 587, 649
Alw21I	GWGCWC	1 cut(s)	728
Alw44I	GTGCAC	1 cut(s)	724
AlwI	GGATC	1 cut(s)	534
Aor13HI	TCCGGA	1 cut(s)	707
AoxI	GGCC	1 cut(s)	3
ApaLI	GTGCAC	1 cut(s)	724
ApeKI	GCWGC	2 cut(s)	449, 546
Asp700I	GAANNNNTTC	2 cut(s)	20, 38
AsuC2I	CCSGG	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	397
AsuII	TTCGAA	1 cut(s)	494
BaeGI	GKGCMC	1 cut(s)	728
BaeI	ACNNNNGTAYC	2 cut(s)	417, 450
BanI	GGYRCC	2 cut(s)	337, 695
BbsI	GAAGAC	2 cut(s)	606, 796
Bbv12I	GWGCWC	1 cut(s)	728
BbvI	GCAGC	2 cut(s)	461, 558
BccI	CCATC	3 cut(s)	167, 517, 561
BceAI	ACGGC	1 cut(s)	776
BclI	TGATCA	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	7
BcuI	ACTAGT	1 cut(s)	728
BfaI	CTAG	2 cut(s)	626, 729
BisI	GCNGC	2 cut(s)	450, 547
BlpI	GCTNAGC	1 cut(s)	542
BlsI	GCNGC	2 cut(s)	451, 548
BmcAI	AGTACT	3 cut(s)	275, 420, 508
Bme1390I	CCNGG	1 cut(s)	7
BmiI	GGNNCC	3 cut(s)	171, 339, 697
BmrFI	CCNGG	1 cut(s)	7
BpiI	GAAGAC	2 cut(s)	606, 796
Bpu1102I	GCTNAGC	1 cut(s)	542
Bpu14I	TTCGAA	1 cut(s)	494
BpuEI	CTTGAG	2 cut(s)	77, 262
BpuMI	CCSGG	1 cut(s)	7
BsaAI	YACGTR	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	6, 218, 286
BsaWI	WCCGGW	1 cut(s)	707
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	707
BseDI	CCNNGG	3 cut(s)	6, 218, 286
BseGI	GGATG	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	533, 746
BseNI	ACTGG	1 cut(s)	435
BseSI	GKGCMC	1 cut(s)	728
BseXI	GCAGC	2 cut(s)	461, 558
BsgI	GTGCAG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	337, 695
BsiHKAI	GWGCWC	1 cut(s)	728
BsiSI	CCGG	2 cut(s)	6, 708
BslI	CCNNNNNNNGG	1 cut(s)	255
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	728
Bsp13I	TCCGGA	1 cut(s)	707
Bsp143I	GATC	2 cut(s)	487, 526
Bsp1720I	GCTNAGC	1 cut(s)	542
BspACI	CCGC	2 cut(s)	405, 444
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	534, 747
BspEI	TCCGGA	1 cut(s)	707
BspLI	GGNNCC	3 cut(s)	171, 339, 697
BspPI	GGATC	1 cut(s)	534
BspT104I	TTCGAA	1 cut(s)	494
BspT107I	GGYRCC	2 cut(s)	337, 695
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	435
BssECI	CCNNGG	3 cut(s)	6, 218, 286
BssMI	GATC	2 cut(s)	487, 526
BssT1I	CCWWGG	2 cut(s)	218, 286
Bst4CI	ACNGT	4 cut(s)	273, 369, 606, 781
Bst6I	CTCTTC	1 cut(s)	242
BstBAI	YACGTR	1 cut(s)	138
BstBI	TTCGAA	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	647
BstDEI	CTNAG	3 cut(s)	542, 715, 755
BstF5I	GGATG	1 cut(s)	260
BstKTI	GATC	2 cut(s)	490, 529
BstMBI	GATC	2 cut(s)	487, 526
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 314, 593
BstSCI	CCNGG	1 cut(s)	5
BstSLI	GKGCMC	1 cut(s)	728
BstSNI	TACGTA	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	461, 558
BstV2I	GAAGAC	2 cut(s)	606, 796
BstXI	CCANNNNNNTGG	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	260
BtsIMutI	CAGTG	3 cut(s)	428, 602, 777
Cac8I	GCNNGC	1 cut(s)	647
Csp6I	GTAC	5 cut(s)	274, 365, 419, 426, 507
CviAII	CATG	7 cut(s)	334, 358, 520, 530, 618, 657, 784
CviJI	RGCY	8 cut(s)	5, 56, 170, 180, 413, 541, 587, 649
CviKI_1	RGCY	8 cut(s)	5, 56, 170, 180, 413, 541, 587, 649
CviQI	GTAC	5 cut(s)	274, 365, 419, 426, 507
DdeI	CTNAG	3 cut(s)	542, 715, 755
DpnI	GATC	2 cut(s)	489, 528
DpnII	GATC	2 cut(s)	487, 526
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco105I	TACGTA	1 cut(s)	138
Eco130I	CCWWGG	2 cut(s)	218, 286
EcoT14I	CCWWGG	2 cut(s)	218, 286
ErhI	CCWWGG	2 cut(s)	218, 286
FaeI	CATG	7 cut(s)	337, 361, 523, 533, 621, 660, 787
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FatI	CATG	7 cut(s)	333, 357, 519, 529, 617, 656, 783
FbaI	TGATCA	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	202
Fnu4HI	GCNGC	2 cut(s)	450, 547
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	2 cut(s)	450, 547
FspBI	CTAG	2 cut(s)	626, 729
GluI	GCNGC	2 cut(s)	450, 547
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	6, 708
Hin1II	CATG	7 cut(s)	337, 361, 523, 533, 621, 660, 787
HincII	GTYRAC	2 cut(s)	147, 331
HindII	GTYRAC	2 cut(s)	147, 331
HinfI	GANTC	4 cut(s)	21, 34, 291, 711
HpaII	CCGG	2 cut(s)	6, 708
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	6 cut(s)	147, 203, 331, 388, 428, 726
Hpy188I	TCNGA	1 cut(s)	756
Hpy188III	TCNNGA	3 cut(s)	94, 241, 708
Hpy8I	GTNNAC	6 cut(s)	147, 203, 331, 388, 428, 726
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	3 cut(s)	10, 104, 376
HpyCH4III	ACNGT	4 cut(s)	273, 369, 606, 781
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	5 cut(s)	399, 449, 596, 631, 726
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 314, 593
HpyF3I	CTNAG	3 cut(s)	542, 715, 755
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	7 cut(s)	337, 361, 523, 533, 621, 660, 787
Kpn2I	TCCGGA	1 cut(s)	707
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	2 cut(s)	487, 526
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	7 cut(s)	19, 354, 416, 565, 582, 682, 721
Lsp1109I	GCAGC	2 cut(s)	461, 558
MaeI	CTAG	2 cut(s)	626, 729
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	230, 346
MalI	GATC	2 cut(s)	489, 528
MboI	GATC	2 cut(s)	487, 526
MboII	GAAGA	4 cut(s)	154, 229, 606, 796
MhlI	GDGCHC	1 cut(s)	728
MluCI	AATT	4 cut(s)	150, 174, 513, 839
MnlI	CCTC	3 cut(s)	245, 749, 750
MroI	TCCGGA	1 cut(s)	707
MroXI	GAANNNNTTC	2 cut(s)	20, 38
MslI	CAYNNNNRTG	4 cut(s)	47, 433, 607, 782
MspI	CCGG	2 cut(s)	6, 708
MspR9I	CCNGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	3 cut(s)	53, 314, 593
NciI	CCSGG	1 cut(s)	7
NdeII	GATC	2 cut(s)	487, 526
NlaIII	CATG	7 cut(s)	337, 361, 523, 533, 621, 660, 787
NlaIV	GGNNCC	3 cut(s)	171, 339, 697
NmuCI	GTSAC	1 cut(s)	346
NspV	TTCGAA	1 cut(s)	494
OliI	CACNNNNGTG	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	2 cut(s)	500, 821
PdmI	GAANNNNTTC	2 cut(s)	20, 38
PfeI	GAWTC	4 cut(s)	21, 34, 291, 711
PkrI	GCNGC	2 cut(s)	451, 548
Ppu21I	YACGTR	1 cut(s)	138
PspN4I	GGNNCC	3 cut(s)	171, 339, 697
RsaI	GTAC	5 cut(s)	275, 366, 420, 427, 508
RsaNI	GTAC	5 cut(s)	274, 365, 419, 426, 507
RseI	CAYNNNNRTG	4 cut(s)	47, 433, 607, 782
SatI	GCNGC	2 cut(s)	450, 547
Sau3AI	GATC	2 cut(s)	487, 526
ScaI	AGTACT	3 cut(s)	275, 420, 508
ScrFI	CCNGG	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	728
SetI	ASST	9 cut(s)	140, 182, 237, 387, 543, 589, 651, 721, 741
SfuI	TTCGAA	1 cut(s)	494
SmiMI	CAYNNNNRTG	4 cut(s)	47, 433, 607, 782
SmlI	CTYRAG	2 cut(s)	92, 241
SmoI	CTYRAG	2 cut(s)	92, 241
SnaBI	TACGTA	1 cut(s)	138
SpeI	ACTAGT	1 cut(s)	728
Sse9I	AATT	4 cut(s)	150, 174, 513, 839
SsiI	CCGC	2 cut(s)	405, 444
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	2 cut(s)	626, 729
StyD4I	CCNGG	1 cut(s)	5
StyI	CCWWGG	2 cut(s)	218, 286
TaaI	ACNGT	4 cut(s)	273, 369, 606, 781
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	3 cut(s)	24, 155, 494
TasI	AATT	4 cut(s)	150, 174, 513, 839
TatI	WGTACW	3 cut(s)	273, 418, 506
TfiI	GAWTC	4 cut(s)	21, 34, 291, 711
TscAI	CASTG	3 cut(s)	435, 609, 784
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	2 cut(s)	449, 546
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	7 cut(s)	29, 31, 123, 131, 343, 606, 698
TspGWI	ACGGA	1 cut(s)	733
TspRI	CASTG	3 cut(s)	435, 609, 784
VneI	GTGCAC	1 cut(s)	724
XmiI	GTMKAC	1 cut(s)	202
XmnI	GAANNNNTTC	2 cut(s)	20, 38
XspI	CTAG	2 cut(s)	626, 729
ZrmI	AGTACT	3 cut(s)	275, 420, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.