Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000665

Physical Location & Seq

Genomic Coordinates Reverse (-)

53611272 .. 53613663

Gene Structure 2392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58663

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGTGAATTTCTATGGACAATGGAAGCCAGTGGTTGCCATGATTGGCATCAACCTTGCTTTGGCCATAGTCAACGTACTTCTTAAGTTAACTCTGGATAAAGGAGTGCACAATTTGGTTGTAATTACTTATAGACAGTCAATTTCTTGTGTCTTCTTGACACCCATTGCCTTCTTTTGGGAAAGTATATGTTGTTTTCAACATTGCACTTTGTTATTTGAAAGTCTCAATTTCTTCCTCAAAATAGCCAAAAAAAAAAAAAACTTCATTCTATCAAACTTTTTCAGTCTAGAGAGAGTGAGCATTAGGAGCAAGGGAGGCAGAGCTAAGATATCGGGTGCTTTGATATGCATTGGTGGAGCTTTGTCATTGACCTTTTACAAAGGAATGCCACTGACCAACCAACACTCACATGCCACAGCTGAAATTGAAAACCATGACTATATACTGAGTGCAGAAAACAAGAGAGTGAGGTGGGCACTTGGTTCAGTGTTTTTGGCAGCAGGTTGCATGTTGTGGGCTTCATGGTTTCTCATACAAGCCAAAATTGGGAAGAGCTACCCATTTCAGTACTCTAGCACAGCCATCTTGTCATTCTTTGGTGTCATTCAGTTAGCCATCTTGACCTTGCTTACTGAGAGAAGCATCAGCATGTCAATGTGGGTTTTGAAGGGGAAGTTGGAGATACTGAGTGTCACATATGCTGGAGCAGTTGGATCAGGGTTGACCTATGTAGGCATGTCATGGTGTGTGAAGCAAAAGGGTCCATTGTTTACATCAACATTCACTCCCTTAATCCAGATATTTGTGGCTATGTTTGACTTCTTAACCTTGCATGAACAGATCTATGTCGGAAGTGTGGTTGGTTCTGTCCTAGTGATAGTGGGAATGTATGTTCTACTGTGGGGGAAAAGCAATGATGCGAAGGAAATTGTGGTGAAGCAGACATTAGCAGCTGAAGAAGGTGCAGATGTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

326

Amino Acids

36.12

Weight (kDa)

9.31

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	162 - 301	9.3e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca	FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica	MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica	Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis	pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis	RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata	RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora	Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii	Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa	Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha	Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana	Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	494
AclWI	GGATC	1 cut(s)	724
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	978
AfaI	GTAC	2 cut(s)	78, 572
AfiI	CCNNNNNNNGG	3 cut(s)	61, 177, 549
AflII	CTTAAG	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	200, 221, 431, 670
AjuI	GAANNNNNNNTTGG	2 cut(s)	662, 694
AloI	GAACNNNNNNTCC	2 cut(s)	879, 911
AluBI	AGCT	5 cut(s)	326, 362, 422, 558, 956
AluI	AGCT	5 cut(s)	326, 362, 422, 558, 956
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	230
Alw44I	GTGCAC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	724
AoxI	GGCC	1 cut(s)	63
ApaLI	GTGCAC	1 cut(s)	107
ApeKI	GCWGC	2 cut(s)	500, 953
ApoI	RAATTY	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	764
AsuHPI	GGTGA	2 cut(s)	16, 949
AvaII	GGWCC	1 cut(s)	764
BaeGI	GKGCMC	2 cut(s)	111, 481
BalI	TGGCCA	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	512, 965
BccI	CCATC	2 cut(s)	593, 626
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	3 cut(s)	290, 576, 875
BfrI	CTTAAG	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	494
BglII	AGATCT	1 cut(s)	843
BisI	GCNGC	2 cut(s)	501, 954
BlsI	GCNGC	2 cut(s)	502, 955
BmcAI	AGTACT	1 cut(s)	572
Bme18I	GGWCC	1 cut(s)	764
BmgT120I	GGNCC	1 cut(s)	764
BmiI	GGNNCC	1 cut(s)	765
BmsI	GCATC	3 cut(s)	57, 654, 910
BpiI	GAAGAC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	726
BsaBI	GATNNNNATC	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	772, 802
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 177, 549
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	3 cut(s)	165, 202, 922
Bse8I	GATNNNNATC	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	3 cut(s)	61, 177, 549
BseMI	GCAATG	3 cut(s)	165, 202, 922
BseMII	CTCAG	3 cut(s)	440, 627, 680
BseNI	ACTGG	1 cut(s)	29
BseSI	GKGCMC	2 cut(s)	111, 481
BseXI	GCAGC	2 cut(s)	512, 965
BsgI	GTGCAG	1 cut(s)	474
BshFI	GGCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	959
BslI	CCNNNNNNNGG	3 cut(s)	61, 177, 549
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	959
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	111, 481
Bsp143I	GATC	2 cut(s)	716, 843
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	3 cut(s)	441, 628, 681
BspLI	GGNNCC	1 cut(s)	765
BspMI	ACCTGC	1 cut(s)	494
BspPI	GGATC	1 cut(s)	724
BspQI	GCTCTTC	1 cut(s)	548
BspTI	CTTAAG	1 cut(s)	83
BsrDI	GCAATG	3 cut(s)	165, 202, 922
BsrI	ACTGG	1 cut(s)	29
BssMI	GATC	2 cut(s)	716, 843
Bst4CI	ACNGT	2 cut(s)	138, 903
Bst6I	CTCTTC	1 cut(s)	548
BstAFI	CTTAAG	1 cut(s)	83
BstDEI	CTNAG	4 cut(s)	327, 449, 636, 689
BstKTI	GATC	2 cut(s)	719, 846
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	2 cut(s)	716, 843
BstMWI	GCNNNNNNNGC	2 cut(s)	309, 318
BstNSI	RCATGY	4 cut(s)	416, 514, 655, 742
BstSLI	GKGCMC	2 cut(s)	111, 481
BstV1I	GCAGC	2 cut(s)	512, 965
BstV2I	GAAGAC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	843
BstYI	RGATCY	1 cut(s)	843
BsuRI	GGCC	1 cut(s)	65
BtsIMutI	CAGTG	3 cut(s)	36, 392, 495
BveI	ACCTGC	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	764
Csp6I	GTAC	2 cut(s)	77, 571
CviAII	CATG	9 cut(s)	40, 413, 437, 511, 525, 652, 739, 744, 836
CviQI	GTAC	2 cut(s)	77, 571
DdeI	CTNAG	4 cut(s)	327, 449, 636, 689
DpnI	GATC	2 cut(s)	718, 845
DpnII	GATC	2 cut(s)	716, 843
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	548
EarI	CTCTTC	1 cut(s)	548
Eco32I	GATATC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	764
Eco57I	CTGAAG	1 cut(s)	978
EcoRV	GATATC	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	353
FaeI	CATG	9 cut(s)	43, 416, 440, 514, 528, 655, 742, 747, 839
FaqI	GGGAC	1 cut(s)	959
FatI	CATG	9 cut(s)	39, 412, 436, 510, 524, 651, 738, 743, 835
FauNDI	CATATG	1 cut(s)	700
Fnu4HI	GCNGC	2 cut(s)	501, 954
Fsp4HI	GCNGC	2 cut(s)	501, 954
FspBI	CTAG	3 cut(s)	290, 576, 875
GluI	GCNGC	2 cut(s)	501, 954
GsuI	CTGGAG	1 cut(s)	726
HaeIII	GGCC	1 cut(s)	65
Hin1II	CATG	9 cut(s)	43, 416, 440, 514, 528, 655, 742, 747, 839
HincII	GTYRAC	3 cut(s)	73, 90, 726
HindII	GTYRAC	3 cut(s)	73, 90, 726
HpaI	GTTAAC	1 cut(s)	90
HphI	GGTGA	2 cut(s)	16, 949
Hpy166II	GTNNAC	5 cut(s)	73, 90, 109, 726, 774
Hpy188I	TCNGA	1 cut(s)	854
Hpy188III	TCNNGA	5 cut(s)	95, 157, 290, 622, 799
Hpy8I	GTNNAC	5 cut(s)	73, 90, 109, 726, 774
HpyAV	CCTTC	4 cut(s)	181, 664, 919, 956
HpyCH4III	ACNGT	2 cut(s)	138, 903
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	7 cut(s)	109, 207, 351, 455, 510, 835, 968
HpyF10VI	GCNNNNNNNGC	2 cut(s)	309, 318
HpyF3I	CTNAG	4 cut(s)	327, 449, 636, 689
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	9 cut(s)	43, 416, 440, 514, 528, 655, 742, 747, 839
KspAI	GTTAAC	1 cut(s)	90
Kzo9I	GATC	2 cut(s)	716, 843
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	3 cut(s)	309, 359, 707
LpnPI	CCDG	6 cut(s)	42, 80, 489, 690, 705, 812
Lsp1109I	GCAGC	2 cut(s)	512, 965
LweI	GCATC	3 cut(s)	57, 654, 910
MaeI	CTAG	3 cut(s)	290, 576, 875
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	694
MalI	GATC	2 cut(s)	718, 845
MboI	GATC	2 cut(s)	716, 843
MboII	GAAGA	4 cut(s)	145, 226, 565, 971
MflI	RGATCY	1 cut(s)	843
MhlI	GDGCHC	2 cut(s)	111, 481
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	8 cut(s)	7, 112, 123, 141, 229, 426, 546, 930
MluNI	TGGCCA	1 cut(s)	65
MmeI	TCCRAC	3 cut(s)	660, 694, 832
MnlI	CCTC	3 cut(s)	248, 311, 465
Mox20I	TGGCCA	1 cut(s)	65
Mph1103I	ATGCAT	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	4 cut(s)	84, 89, 794, 827
MslI	CAYNNNNRTG	3 cut(s)	411, 650, 656
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	2 cut(s)	422, 956
MspCI	CTTAAG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	309, 318
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	2 cut(s)	716, 843
NlaIII	CATG	9 cut(s)	43, 416, 440, 514, 528, 655, 742, 747, 839
NlaIV	GGNNCC	1 cut(s)	765
NmuCI	GTSAC	1 cut(s)	694
NsiI	ATGCAT	1 cut(s)	353
NspI	RCATGY	4 cut(s)	416, 514, 655, 742
PciSI	GCTCTTC	1 cut(s)	548
PctI	GAATGC	1 cut(s)	393
PkrI	GCNGC	2 cut(s)	502, 955
PspN4I	GGNNCC	1 cut(s)	765
PspPI	GGNCC	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	843
PvuII	CAGCTG	2 cut(s)	422, 956
RsaI	GTAC	2 cut(s)	78, 572
RsaNI	GTAC	2 cut(s)	77, 571
RseI	CAYNNNNRTG	3 cut(s)	411, 650, 656
SapI	GCTCTTC	1 cut(s)	548
SaqAI	TTAA	4 cut(s)	84, 89, 794, 827
SatI	GCNGC	2 cut(s)	501, 954
Sau3AI	GATC	2 cut(s)	716, 843
Sau96I	GGNCC	1 cut(s)	764
ScaI	AGTACT	1 cut(s)	572
SduI	GDGCHC	2 cut(s)	111, 481
SfaNI	GCATC	3 cut(s)	57, 654, 910
SinI	GGWCC	1 cut(s)	764
SmiMI	CAYNNNNRTG	3 cut(s)	411, 650, 656
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	8 cut(s)	7, 112, 123, 141, 229, 426, 546, 930
SspMI	CTAG	3 cut(s)	290, 576, 875
TaaI	ACNGT	2 cut(s)	138, 903
TaiI	ACGT	1 cut(s)	78
TasI	AATT	8 cut(s)	7, 112, 123, 141, 229, 426, 546, 930
TatI	WGTACW	1 cut(s)	570
Tru1I	TTAA	4 cut(s)	84, 89, 794, 827
Tru9I	TTAA	4 cut(s)	84, 89, 794, 827
TscAI	CASTG	3 cut(s)	36, 399, 495
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	2 cut(s)	500, 953
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	3 cut(s)	256, 513, 852
TspRI	CASTG	3 cut(s)	36, 399, 495
Vha464I	CTTAAG	1 cut(s)	83
VneI	GTGCAC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	764
XapI	RAATTY	1 cut(s)	7
XbaI	TCTAGA	1 cut(s)	289
XceI	RCATGY	4 cut(s)	416, 514, 655, 742
XspI	CTAG	3 cut(s)	290, 576, 875
ZrmI	AGTACT	1 cut(s)	572
Zsp2I	ATGCAT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.