Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000665

Physical Location & Seq

Genomic Coordinates Reverse (-)

21066661 .. 21070692

Gene Structure 4032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1095700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGATTGCTGGGGAAAATGGAAGTTTATTATTGTCATGCTGGTCATTAACCTTGCATTGGCTATAGTAAATATCCTGCTTAAGAAGACTCTTGACGGTGGATTGGGTGGTCTGATTATTGTTACTTATCGACAGTCGATTTCTGCTGTTTTCTTAACACCAATTGCTTTCTTTTTGGAAAGAAAAAGTAGAACAGAGCTTACATCTCGAATCTTATGCCACCTTTTCATCAGTGCTCTAATTGGGATAACTTTCACACATTACTTATTTCTTCTTGGACTTCAGTACACCTCTGCAACATATTCCTGTGCATTCATCAACATGGTGCCTGTCAACACTTTCCTCTTGGCTCTACCATTTGGACTAGAGAAAGTGAACATAAAGAACAAGGGTATTGGGATCGCTAAAGTTCTCGGTGCCCTAATATGTATTGGTGGAGCTGTGTCATTGATCTTGTACAAAGGAATGCCACTAACCAACCAACATTCAGAATCCACACTTCAAATGCAAAACCATGCCAATACAATGGCGTTGTCATCAGCCAAGAAGAATGATAGGTGGGCTGTTGGTTCAGTATTTTTGGCATCAGGCTGCCTCTTGTGGTCTTCATGGTTCCTCATCCAAGCAAAGATCGGCCAGAGCTACCCTTTTCAGTACTCTAGCACCGCGATTTTGTCCTTCTTTGGCGCCATTCAATCTGCCATCTTGTGCTTCATCACGCAGAGGCACATTGTCATGTCAATGTGGATTCTCAAGGGAAAGTTGGAGATCTTAAGTGTCGTATATGCTGGAGTAATAGGATCAGGGTTGTGCTACGTAGGGATGTCATGGTGTGTGAAACAAAAGGGTGCACTCTTCACAGCAGCGTTTACCCCCGCCACCCAGATATTTGCGGTTATGTTGGACTTCTCTTTCTTGCATGAACAAATTTACCTCGGAAGCGTGGTGGGATCTGTTATTGTCATAACTGGCATGTACATTTTACTGTGGGGTAAAAGCAAGGATCACAAGGAAATGGTGATCAAGCAGACACAAGCAGCTGATCAAGATCAAGAATGTGGTCCAATGCCACAAGGCATGCCCCTTGATGTAAATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

367

Amino Acids

40.27

Weight (kDa)

9.27

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	9 - 143	5.8e-11	EamA-like transporter family
EamA	PF00892	190 - 329	2.5e-10	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca	FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica	MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica	Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis	pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis	RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata	RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora	Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii	Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa	Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha	Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana	Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	325, 416, 686
AccII	CGCG	1 cut(s)	668
AciI	CCGC	3 cut(s)	666, 876, 893
AclWI	GGATC	4 cut(s)	407, 808, 958, 1011
AcoI	YGGCCR	1 cut(s)	634
AcsI	RAATTY	1 cut(s)	927
AcuI	CTGAAG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	687
AfaI	GTAC	4 cut(s)	287, 458, 656, 977
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflII	CTTAAG	2 cut(s)	80, 772
AgsI	TTSAA	2 cut(s)	503, 695
AluBI	AGCT	4 cut(s)	199, 440, 642, 1040
AluI	AGCT	4 cut(s)	199, 440, 642, 1040
Alw21I	GWGCWC	2 cut(s)	238, 853
Alw44I	GTGCAC	1 cut(s)	849
AlwI	GGATC	4 cut(s)	407, 808, 958, 1011
AoxI	GGCC	1 cut(s)	634
ApaLI	GTGCAC	1 cut(s)	849
ApeKI	GCWGC	3 cut(s)	591, 863, 1037
ApoI	RAATTY	1 cut(s)	927
AspLEI	GCGC	1 cut(s)	689
AspS9I	GGNCC	1 cut(s)	1061
AsuHPI	GGTGA	1 cut(s)	1030
AvaII	GGWCC	1 cut(s)	1061
BaeGI	GKGCMC	2 cut(s)	421, 853
BanI	GGYRCC	3 cut(s)	325, 416, 686
BbsI	GAAGAC	2 cut(s)	92, 597
Bbv12I	GWGCWC	2 cut(s)	238, 853
BbvI	GCAGC	3 cut(s)	578, 875, 1049
BccI	CCATC	1 cut(s)	710
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BclI	TGATCA	2 cut(s)	1020, 1042
BfaI	CTAG	2 cut(s)	365, 660
BfmI	CTRYAG	1 cut(s)	63
BfoI	RGCGCY	1 cut(s)	690
BfrI	CTTAAG	2 cut(s)	80, 772
BglII	AGATCT	1 cut(s)	768
BisI	GCNGC	3 cut(s)	592, 864, 1038
BlsI	GCNGC	3 cut(s)	593, 865, 1039
BmcAI	AGTACT	1 cut(s)	656
Bme18I	GGWCC	1 cut(s)	1061
BmgT120I	GGNCC	1 cut(s)	1061
BmiI	GGNNCC	4 cut(s)	327, 418, 614, 688
BmsI	GCATC	1 cut(s)	593
BpiI	GAAGAC	2 cut(s)	92, 597
BpmI	CTGGAG	1 cut(s)	810
BpuEI	CTTGAG	1 cut(s)	737
BsaAI	YACGTR	1 cut(s)	817
BsaBI	GATNNNNATC	1 cut(s)	1047
BsaHI	GRCGYC	1 cut(s)	687
BsaJI	CCNNGG	1 cut(s)	934
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	973
Bse8I	GATNNNNATC	1 cut(s)	1047
BseDI	CCNNGG	1 cut(s)	934
BseGI	GGATG	2 cut(s)	618, 828
BseJI	GATNNNNATC	1 cut(s)	1047
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	973
BseSI	GKGCMC	2 cut(s)	421, 853
BseXI	GCAGC	3 cut(s)	578, 875, 1049
BseYI	CCCAGC	1 cut(s)	9
Bsh1236I	CGCG	1 cut(s)	668
BshFI	GGCC	1 cut(s)	636
BshNI	GGYRCC	3 cut(s)	325, 416, 686
BsiHKAI	GWGCWC	2 cut(s)	238, 853
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmI	GAATGC	2 cut(s)	311, 471
BsnI	GGCC	1 cut(s)	636
Bsp1286I	GDGCHC	3 cut(s)	238, 421, 853
Bsp1407I	TGTACA	2 cut(s)	456, 975
BspACI	CCGC	3 cut(s)	666, 876, 893
BspANI	GGCC	1 cut(s)	636
BspFNI	CGCG	1 cut(s)	668
BspLI	GGNNCC	4 cut(s)	327, 418, 614, 688
BspPI	GGATC	4 cut(s)	407, 808, 958, 1011
BspT107I	GGYRCC	3 cut(s)	325, 416, 686
BspTI	CTTAAG	2 cut(s)	80, 772
BsrGI	TGTACA	2 cut(s)	456, 975
BsrI	ACTGG	1 cut(s)	973
BssECI	CCNNGG	1 cut(s)	934
BssNI	GRCGYC	1 cut(s)	687
Bst4CI	ACNGT	3 cut(s)	98, 135, 987
Bst6I	CTCTTC	1 cut(s)	860
BstACI	GRCGYC	1 cut(s)	687
BstAFI	CTTAAG	2 cut(s)	80, 772
BstAUI	TGTACA	2 cut(s)	456, 975
BstBAI	YACGTR	1 cut(s)	817
BstC8I	GCNNGC	1 cut(s)	1079
BstF5I	GGATG	2 cut(s)	618, 828
BstFNI	CGCG	1 cut(s)	668
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	1 cut(s)	689
BstNSI	RCATGY	2 cut(s)	976, 1081
BstSFI	CTRYAG	1 cut(s)	63
BstSLI	GKGCMC	2 cut(s)	421, 853
BstSNI	TACGTA	1 cut(s)	817
BstUI	CGCG	1 cut(s)	668
BstV1I	GCAGC	3 cut(s)	578, 875, 1049
BstV2I	GAAGAC	2 cut(s)	92, 597
BstX2I	RGATCY	2 cut(s)	768, 950
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	2 cut(s)	768, 950
BsuRI	GGCC	1 cut(s)	636
BtsCI	GGATG	2 cut(s)	618, 828
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	1079
CfoI	GCGC	1 cut(s)	689
Cfr13I	GGNCC	1 cut(s)	1061
Csp6I	GTAC	4 cut(s)	286, 457, 655, 976
CviAII	CATG	9 cut(s)	37, 322, 515, 609, 736, 828, 920, 973, 1078
CviQI	GTAC	4 cut(s)	286, 457, 655, 976
DinI	GGCGCC	1 cut(s)	688
EaeI	YGGCCR	1 cut(s)	634
Eam1104I	CTCTTC	1 cut(s)	860
EarI	CTCTTC	1 cut(s)	860
Eco105I	TACGTA	1 cut(s)	817
Eco47I	GGWCC	1 cut(s)	1061
Eco57I	CTGAAG	1 cut(s)	266
EgeI	GGCGCC	1 cut(s)	688
EheI	GGCGCC	1 cut(s)	688
FaeI	CATG	9 cut(s)	40, 325, 518, 612, 739, 831, 923, 976, 1081
FatI	CATG	9 cut(s)	36, 321, 514, 608, 735, 827, 919, 972, 1077
FauI	CCCGC	1 cut(s)	883
FbaI	TGATCA	2 cut(s)	1020, 1042
Fnu4HI	GCNGC	3 cut(s)	592, 864, 1038
FokI	GGATG	2 cut(s)	605, 835
Fsp4HI	GCNGC	3 cut(s)	592, 864, 1038
FspBI	CTAG	2 cut(s)	365, 660
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	3 cut(s)	592, 864, 1038
GsaI	CCCAGC	1 cut(s)	13
GsuI	CTGGAG	1 cut(s)	810
HaeII	RGCGCY	1 cut(s)	690
HaeIII	GGCC	1 cut(s)	636
HhaI	GCGC	1 cut(s)	689
Hin1I	GRCGYC	1 cut(s)	687
Hin1II	CATG	9 cut(s)	40, 325, 518, 612, 739, 831, 923, 976, 1081
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	4 cut(s)	88, 210, 491, 748
HphI	GGTGA	1 cut(s)	1030
Hpy166II	GTNNAC	5 cut(s)	288, 334, 376, 851, 870
Hpy188I	TCNGA	3 cut(s)	114, 490, 938
Hpy188III	TCNNGA	4 cut(s)	92, 207, 1046, 1052
Hpy8I	GTNNAC	5 cut(s)	288, 334, 376, 851, 870
HpyAV	CCTTC	1 cut(s)	688
HpyCH4III	ACNGT	3 cut(s)	98, 135, 987
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	6 cut(s)	56, 296, 311, 508, 851, 919
HpySE526I	ACGT	1 cut(s)	816
Hsp92I	GRCGYC	1 cut(s)	687
Hsp92II	CATG	9 cut(s)	40, 325, 518, 612, 739, 831, 923, 976, 1081
HspAI	GCGC	1 cut(s)	687
KasI	GGCGCC	1 cut(s)	686
Ksp22I	TGATCA	2 cut(s)	1020, 1042
LmnI	GCTCC	1 cut(s)	437
Lsp1109I	GCAGC	3 cut(s)	578, 875, 1049
LweI	GCATC	1 cut(s)	593
MaeI	CTAG	2 cut(s)	365, 660
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	1 cut(s)	121
MboII	GAAGA	5 cut(s)	97, 263, 559, 597, 847
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	2 cut(s)	768, 950
MhlI	GDGCHC	3 cut(s)	238, 421, 853
MluCI	AATT	3 cut(s)	162, 240, 927
Mly113I	GGCGCC	1 cut(s)	687
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	2 cut(s)	744, 882
MnlI	CCTC	6 cut(s)	301, 353, 605, 626, 717, 944
MseI	TTAA	4 cut(s)	48, 81, 155, 773
MslI	CAYNNNNRTG	3 cut(s)	320, 734, 740
MspA1I	CMGCKG	1 cut(s)	1040
MspCI	CTTAAG	2 cut(s)	80, 772
MunI	CAATTG	1 cut(s)	162
Mva1269I	GAATGC	2 cut(s)	311, 471
MvnI	CGCG	1 cut(s)	668
NarI	GGCGCC	1 cut(s)	687
NlaIII	CATG	9 cut(s)	40, 325, 518, 612, 739, 831, 923, 976, 1081
NlaIV	GGNNCC	4 cut(s)	327, 418, 614, 688
NspI	RCATGY	2 cut(s)	976, 1081
PaeI	GCATGC	1 cut(s)	1081
PctI	GAATGC	2 cut(s)	311, 471
PfeI	GAWTC	3 cut(s)	210, 491, 748
PkrI	GCNGC	3 cut(s)	593, 865, 1039
PleI	GAGTC	1 cut(s)	82
PluTI	GGCGCC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	82
Ppu21I	YACGTR	1 cut(s)	817
PspFI	CCCAGC	1 cut(s)	9
PspN4I	GGNNCC	4 cut(s)	327, 418, 614, 688
PspPI	GGNCC	1 cut(s)	1061
PsrI	GAACNNNNNNTAC	2 cut(s)	184, 216
PsuI	RGATCY	2 cut(s)	768, 950
PvuII	CAGCTG	1 cut(s)	1040
RsaI	GTAC	4 cut(s)	287, 458, 656, 977
RsaNI	GTAC	4 cut(s)	286, 457, 655, 976
RseI	CAYNNNNRTG	3 cut(s)	320, 734, 740
SaqAI	TTAA	4 cut(s)	48, 81, 155, 773
SatI	GCNGC	3 cut(s)	592, 864, 1038
Sau96I	GGNCC	1 cut(s)	1061
ScaI	AGTACT	1 cut(s)	656
SchI	GAGTC	1 cut(s)	82
SduI	GDGCHC	3 cut(s)	238, 421, 853
SfaNI	GCATC	1 cut(s)	593
SfcI	CTRYAG	1 cut(s)	63
SfoI	GGCGCC	1 cut(s)	688
SinI	GGWCC	1 cut(s)	1061
SmiMI	CAYNNNNRTG	3 cut(s)	320, 734, 740
SmlI	CTYRAG	3 cut(s)	80, 752, 772
SmoI	CTYRAG	3 cut(s)	80, 752, 772
SnaBI	TACGTA	1 cut(s)	817
SphI	GCATGC	1 cut(s)	1081
Sse9I	AATT	3 cut(s)	162, 240, 927
SsiI	CCGC	3 cut(s)	666, 876, 893
SspDI	GGCGCC	1 cut(s)	686
SspMI	CTAG	2 cut(s)	365, 660
TaaI	ACNGT	3 cut(s)	98, 135, 987
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	3 cut(s)	130, 137, 208
TasI	AATT	3 cut(s)	162, 240, 927
TatI	WGTACW	4 cut(s)	285, 456, 654, 975
TfiI	GAWTC	3 cut(s)	210, 491, 748
Tru1I	TTAA	4 cut(s)	48, 81, 155, 773
Tru9I	TTAA	4 cut(s)	48, 81, 155, 773
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	3 cut(s)	591, 863, 1037
TspDTI	ATGAA	5 cut(s)	217, 304, 597, 703, 936
TspRI	CASTG	1 cut(s)	238
Vha464I	CTTAAG	2 cut(s)	80, 772
VneI	GTGCAC	1 cut(s)	849
VpaK11BI	GGWCC	1 cut(s)	1061
XapI	RAATTY	1 cut(s)	927
XceI	RCATGY	2 cut(s)	976, 1081
XspI	CTAG	2 cut(s)	365, 660
ZrmI	AGTACT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.