Rmu_co8477061.1_g000001

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8477061.1
Physical Location & Seq
Reverse (-)
301 .. 2038
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8477061.1_g000001.1.cds

Sequence Viewer

Length: 1116 bp
atgaagggattcgacgaatggaagcctttcattgctatggtagccatagattttgcgtttgccatagtgaatattctgctcaagaaagtgcttgatgaaggaatgaaccatttggttctcattacgtatcggttgacaatttcgaccatcttcttggctccaattagctacttttgggaaaggaatagtagaccaaaactcacaccaaggattgtatgttacctcttcttgagtgccattgttgggtcatccataacacagtacttctttctccttggaatccaatacacatctgctacttttgcttgtgcctttgtcaacatggtgcctatggtcacattcatcatggcagtaccattcgggttagagaaggtgaacttgaaatgcaatagcggtagagccaaagtactcggtacactggtgtgcttatgtggtgcagcgatattgacactttacaaaggagttcctttgtttgatcattcgaaatctacaagtactcaaattaccatgatggatcatggtatcaagctgagcagcaccagaaacaaagggagatggactgttggttcaatagctttggttgcaggaacactgttatggtcttcatggtttctagtgcaatcaaacataggcaagctatatccatgtcagtattccagcactactataatgaacttctttggtgccattcagtccggaatcttaggtttgtgcactagtaagaacctctccgtgtgggttctgaggggaaaagcacaagttctcactgtcatgtttgccgggatgatagcatcaggcttgggctttgtggggatgtcatggtgtgtgaagaaaaggggacctgtgtttactgcagcatttagcccccttgttcagattatggcagcggtgatcggtatccccatgtttcatgaacaactccaccttggaagcttgttggggtctatcattgtgataattggcttgtatattcttctttggggaaagaataaagaaatgcagaagtatatggcaaaactagcccaagaagccgaagcgatgaaggagcaggagcaaccttctcctccaccagtgatcatcagagtctccgtagatgatgattcaaggtgtccatga

Protein Analysis

371

Amino Acids

40.93

Weight (kDa)

9.47

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000665)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 325, 683
AccI GTMKAC 1 cut(s) 190
AccIII TCCGGA 1 cut(s) 695
AciI CCGC 2 cut(s) 393, 887
AclWI GGATC 1 cut(s) 522
AfaI GTAC 5 cut(s) 263, 354, 408, 415, 496
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 3 cut(s) 382, 570, 1104
AhlI ACTAGT 1 cut(s) 716
AleI CACNNNNGTG 1 cut(s) 421
AloI GAACNNNNNNTCC 2 cut(s) 550, 582
AluBI AGCT 5 cut(s) 168, 529, 575, 637, 933
AluI AGCT 5 cut(s) 168, 529, 575, 637, 933
Alw21I GWGCWC 1 cut(s) 716
Alw26I GTCTC 1 cut(s) 1090
Alw44I GTGCAC 1 cut(s) 712
AlwI GGATC 1 cut(s) 522
Aor13HI TCCGGA 1 cut(s) 695
ApaLI GTGCAC 1 cut(s) 712
ApeKI GCWGC 4 cut(s) 437, 534, 854, 884
Asp700I GAANNNNTTC 2 cut(s) 8, 26
AspS9I GGNCC 1 cut(s) 839
AsuC2I CCSGG 1 cut(s) 781
AsuHPI GGTGA 2 cut(s) 385, 901
AsuII TTCGAA 1 cut(s) 482
AvaII GGWCC 1 cut(s) 839
BaeGI GKGCMC 1 cut(s) 716
BaeI ACNNNNGTAYC 2 cut(s) 405, 438
BanI GGYRCC 2 cut(s) 325, 683
BbsI GAAGAC 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 716
BbvI GCAGC 4 cut(s) 449, 546, 866, 896
BccI CCATC 3 cut(s) 155, 505, 549
BciVI GTATCC 1 cut(s) 908
BclI TGATCA 2 cut(s) 475, 1074
BcnI CCSGG 1 cut(s) 781
BcoDI GTCTC 1 cut(s) 1090
BcuI ACTAGT 1 cut(s) 716
BfaI CTAG 3 cut(s) 614, 717, 1019
BfmI CTRYAG 1 cut(s) 852
BfuI GTATCC 1 cut(s) 908
BisI GCNGC 4 cut(s) 438, 535, 855, 885
BlpI GCTNAGC 1 cut(s) 530
BlsI GCNGC 4 cut(s) 439, 536, 856, 886
BmcAI AGTACT 3 cut(s) 263, 408, 496
Bme1390I CCNGG 1 cut(s) 781
Bme18I GGWCC 1 cut(s) 839
BmgT120I GGNCC 1 cut(s) 839
BmiI GGNNCC 4 cut(s) 159, 327, 685, 840
BmrFI CCNGG 1 cut(s) 781
BmsI GCATC 1 cut(s) 800
BpiI GAAGAC 1 cut(s) 594
Bpu1102I GCTNAGC 1 cut(s) 530
Bpu14I TTCGAA 1 cut(s) 482
BpuEI CTTGAG 2 cut(s) 65, 250
BpuMI CCSGG 1 cut(s) 781
BsaAI YACGTR 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 896
BsaJI CCNNGG 3 cut(s) 206, 274, 925
BsaWI WCCGGW 1 cut(s) 695
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse1I ACTGG 2 cut(s) 423, 1070
Bse3DI GCAATG 1 cut(s) 30
Bse8I GATNNNNATC 1 cut(s) 896
BseAI TCCGGA 1 cut(s) 695
BseDI CCNNGG 3 cut(s) 206, 274, 925
BseGI GGATG 3 cut(s) 248, 789, 819
BseJI GATNNNNATC 1 cut(s) 896
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 521, 734
BseNI ACTGG 2 cut(s) 423, 1070
BseRI GAGGAG 1 cut(s) 1053
BseSI GKGCMC 1 cut(s) 716
BseXI GCAGC 4 cut(s) 449, 546, 866, 896
BsgI GTGCAG 1 cut(s) 456
BshNI GGYRCC 2 cut(s) 325, 683
BsiHKAI GWGCWC 1 cut(s) 716
BsiSI CCGG 2 cut(s) 696, 780
BslFI GGGAC 1 cut(s) 852
BslI CCNNNNNNNGG 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 1090
BsmFI GGGAC 1 cut(s) 852
Bsp119I TTCGAA 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 716
Bsp13I TCCGGA 1 cut(s) 695
Bsp143I GATC 4 cut(s) 475, 514, 891, 1074
Bsp1720I GCTNAGC 1 cut(s) 530
BspACI CCGC 2 cut(s) 393, 887
BspCNI CTCAG 2 cut(s) 522, 735
BspEI TCCGGA 1 cut(s) 695
BspHI TCATGA 1 cut(s) 910
BspLI GGNNCC 4 cut(s) 159, 327, 685, 840
BspMAI CTGCAG 1 cut(s) 856
BspPI GGATC 1 cut(s) 522
BspT104I TTCGAA 1 cut(s) 482
BspT107I GGYRCC 2 cut(s) 325, 683
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 2 cut(s) 423, 1070
BssECI CCNNGG 3 cut(s) 206, 274, 925
BssMI GATC 4 cut(s) 475, 514, 891, 1074
BssT1I CCWWGG 3 cut(s) 206, 274, 925
Bst4CI ACNGT 4 cut(s) 261, 562, 594, 769
Bst6I CTCTTC 1 cut(s) 230
BstBAI YACGTR 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 482
BstC8I GCNNGC 1 cut(s) 635
BstDEI CTNAG 3 cut(s) 530, 703, 743
BstF5I GGATG 3 cut(s) 248, 789, 819
BstKTI GATC 4 cut(s) 478, 517, 894, 1077
BstMAI GTCTC 1 cut(s) 1090
BstMBI GATC 4 cut(s) 475, 514, 891, 1074
BstMWI GCNNNNNNNGC 5 cut(s) 41, 302, 581, 1019, 1028
BstSCI CCNGG 1 cut(s) 779
BstSFI CTRYAG 1 cut(s) 852
BstSLI GKGCMC 1 cut(s) 716
BstSNI TACGTA 1 cut(s) 126
BstV1I GCAGC 4 cut(s) 449, 546, 866, 896
BstV2I GAAGAC 1 cut(s) 594
BstXI CCANNNNNNTGG 1 cut(s) 154
BsuI GTATCC 1 cut(s) 908
BtgZI GCGATG 1 cut(s) 1052
BtsCI GGATG 3 cut(s) 248, 789, 819
BtsIMutI CAGTG 4 cut(s) 416, 590, 765, 1077
Cac8I GCNNGC 1 cut(s) 635
CciI TCATGA 1 cut(s) 910
Cfr13I GGNCC 1 cut(s) 839
Csp6I GTAC 5 cut(s) 262, 353, 407, 414, 495
CviQI GTAC 5 cut(s) 262, 353, 407, 414, 495
DdeI CTNAG 3 cut(s) 530, 703, 743
DpnI GATC 4 cut(s) 477, 516, 893, 1076
DpnII GATC 4 cut(s) 475, 514, 891, 1074
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco105I TACGTA 1 cut(s) 126
Eco130I CCWWGG 3 cut(s) 206, 274, 925
Eco47I GGWCC 1 cut(s) 839
EcoO109I RGGNCCY 1 cut(s) 839
EcoT14I CCWWGG 3 cut(s) 206, 274, 925
ErhI CCWWGG 3 cut(s) 206, 274, 925
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 1 cut(s) 852
FbaI TGATCA 2 cut(s) 475, 1074
FblI GTMKAC 1 cut(s) 190
Fnu4HI GCNGC 4 cut(s) 438, 535, 855, 885
FokI GGATG 3 cut(s) 235, 796, 826
Fsp4HI GCNGC 4 cut(s) 438, 535, 855, 885
FspBI CTAG 3 cut(s) 614, 717, 1019
GluI GCNGC 4 cut(s) 438, 535, 855, 885
HapII CCGG 2 cut(s) 696, 780
HincII GTYRAC 2 cut(s) 135, 319
HindII GTYRAC 2 cut(s) 135, 319
HindIII AAGCTT 1 cut(s) 931
HinfI GANTC 5 cut(s) 9, 279, 699, 1083, 1100
HpaII CCGG 2 cut(s) 696, 780
HphI GGTGA 2 cut(s) 385, 901
Hpy166II GTNNAC 7 cut(s) 135, 191, 319, 376, 416, 714, 849
Hpy188I TCNGA 3 cut(s) 744, 876, 1082
Hpy188III TCNNGA 4 cut(s) 82, 229, 696, 911
Hpy8I GTNNAC 7 cut(s) 135, 191, 319, 376, 416, 714, 849
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 4 cut(s) 92, 364, 1036, 1068
HpyCH4III ACNGT 4 cut(s) 261, 562, 594, 769
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 7 cut(s) 387, 437, 584, 619, 714, 854, 1000
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 302, 581, 1019, 1028
HpyF3I CTNAG 3 cut(s) 530, 703, 743
HpySE526I ACGT 1 cut(s) 125
Kpn2I TCCGGA 1 cut(s) 695
Ksp22I TGATCA 2 cut(s) 475, 1074
Kzo9I GATC 4 cut(s) 475, 514, 891, 1074
LmnI GCTCC 3 cut(s) 163, 1045, 1051
Lsp1109I GCAGC 4 cut(s) 449, 546, 866, 896
LweI GCATC 1 cut(s) 800
MaeI CTAG 3 cut(s) 614, 717, 1019
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 2 cut(s) 218, 334
MalI GATC 4 cut(s) 477, 516, 893, 1076
MboI GATC 4 cut(s) 475, 514, 891, 1074
MboII GAAGA 5 cut(s) 142, 217, 594, 841, 965
MhlI GDGCHC 1 cut(s) 716
MluCI AATT 4 cut(s) 138, 162, 501, 957
MlyI GAGTC 1 cut(s) 1092
MnlI CCTC 4 cut(s) 233, 737, 738, 1074
MroI TCCGGA 1 cut(s) 695
MroXI GAANNNNTTC 2 cut(s) 8, 26
MslI CAYNNNNRTG 4 cut(s) 35, 421, 595, 770
MspA1I CMGCKG 1 cut(s) 887
MspI CCGG 2 cut(s) 696, 780
MspR9I CCNGG 1 cut(s) 781
MwoI GCNNNNNNNGC 5 cut(s) 41, 302, 581, 1019, 1028
NciI CCSGG 1 cut(s) 781
NdeII GATC 4 cut(s) 475, 514, 891, 1074
NlaIV GGNNCC 4 cut(s) 159, 327, 685, 840
NmuCI GTSAC 1 cut(s) 334
NspV TTCGAA 1 cut(s) 482
OliI CACNNNNGTG 1 cut(s) 421
PagI TCATGA 1 cut(s) 910
PdmI GAANNNNTTC 2 cut(s) 8, 26
PfeI GAWTC 4 cut(s) 9, 279, 699, 1100
PkrI GCNGC 4 cut(s) 439, 536, 856, 886
PleI GAGTC 1 cut(s) 1091
PpsI GAGTC 1 cut(s) 1091
Ppu21I YACGTR 1 cut(s) 126
PpuMI RGGWCCY 1 cut(s) 839
Psp5II RGGWCCY 1 cut(s) 839
PspN4I GGNNCC 4 cut(s) 159, 327, 685, 840
PspPI GGNCC 1 cut(s) 839
PspPPI RGGWCCY 1 cut(s) 839
PstI CTGCAG 1 cut(s) 856
RsaI GTAC 5 cut(s) 263, 354, 408, 415, 496
RsaNI GTAC 5 cut(s) 262, 353, 407, 414, 495
RseI CAYNNNNRTG 4 cut(s) 35, 421, 595, 770
SatI GCNGC 4 cut(s) 438, 535, 855, 885
Sau3AI GATC 4 cut(s) 475, 514, 891, 1074
Sau96I GGNCC 1 cut(s) 839
ScaI AGTACT 3 cut(s) 263, 408, 496
SchI GAGTC 1 cut(s) 1092
ScrFI CCNGG 1 cut(s) 781
SduI GDGCHC 1 cut(s) 716
SfaNI GCATC 1 cut(s) 800
SfcI CTRYAG 1 cut(s) 852
SfuI TTCGAA 1 cut(s) 482
SinI GGWCC 1 cut(s) 839
SmiMI CAYNNNNRTG 4 cut(s) 35, 421, 595, 770
SmlI CTYRAG 2 cut(s) 80, 229
SmoI CTYRAG 2 cut(s) 80, 229
SnaBI TACGTA 1 cut(s) 126
SpeI ACTAGT 1 cut(s) 716
Sse9I AATT 4 cut(s) 138, 162, 501, 957
SsiI CCGC 2 cut(s) 393, 887
SspI AATATT 1 cut(s) 73
SspMI CTAG 3 cut(s) 614, 717, 1019
StyD4I CCNGG 1 cut(s) 779
StyI CCWWGG 3 cut(s) 206, 274, 925
TaaI ACNGT 4 cut(s) 261, 562, 594, 769
TaiI ACGT 1 cut(s) 128
TaqI TCGA 3 cut(s) 12, 143, 482
TasI AATT 4 cut(s) 138, 162, 501, 957
TatI WGTACW 3 cut(s) 261, 406, 494
TfiI GAWTC 4 cut(s) 9, 279, 699, 1100
TscAI CASTG 4 cut(s) 423, 597, 772, 1077
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 4 cut(s) 437, 534, 854, 884
Tsp45I GTSAC 1 cut(s) 334
TspGWI ACGGA 2 cut(s) 721, 1078
TspRI CASTG 4 cut(s) 423, 597, 772, 1077
VneI GTGCAC 1 cut(s) 712
VpaK11BI GGWCC 1 cut(s) 839
XmiI GTMKAC 1 cut(s) 190
XmnI GAANNNNTTC 2 cut(s) 8, 26
XspI CTAG 3 cut(s) 614, 717, 1019
ZrmI AGTACT 3 cut(s) 263, 408, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.