Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000665

Physical Location & Seq

Genomic Coordinates Reverse (-)

53605326 .. 53607477

Gene Structure 2152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58662

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGTGAATTACAGAGAATGGATGCCTACTGTTGCCATGGTTGCCATAAACCTATCTTTTGCTGGAGTCAATGTGCTTCTTAAGTTGACTTTGGATAAAGGAGTACACAATTTGGTGGTTGTTACTTATCGGCAGTTGATTTCTTGTGTCTTATTGACACCGATTGCCTTGTTTTGGGAAAGGGTAACATTCACACAATACTTGTTTCTTCTTGGACTCCAATACACCTCAGCTACCTATTCCTGTGCATTCATCAACATGGTTCCTGTGAACACTTTCCTATTGGCACTACCATTTGGTCTAGAGAAAGTAAACATTAGGAGCAAGGGAGGAAGAGCAAAGATCTTGGGTGCTCTGATATGTATTGGCGGAGCTTTGTCATTGACATTATACAAAGGAACGCCACTAACCAATCAGCATTCCCATGCCACATCTCAAAATGAAGACAATGACTATATGAGGAGAGCAGCAAAGGATAAAGAGAAGTGGGCAGTTGGTTCACTGCTTTTAGCAGCAGGTTGCCTCTTGTGGGCTTCATGGTTTCTCATACAAGCCAAGATTGGCAAGAGCTACCCATTTCAGTACTCTAGCACAGCTATCTTGTCCTTCTTTGGTGCCATTCAATCAGCCATCTTGAGCTTGGTTACTGAGAGAAACATGAACATGTCAATGTGGGTCTTGAAGGGGGAGTTGGAGATATTAAGTGTCCTATATGCTGGAGCAATTGGATCAGGGTTGTGCTATGTAGGGATGTCATGGTGTGTGAAACAAAAGGGTCCATTGTTTACAGCAGCATTTACCCCCTTAACCCAGATTTTTGTGGCTATGTTTGACTTCTCAACCTTGAAAGAACAAATCTATCTTGGAAGTGTGGTGGGATCTGTCCTAGTCATAGTGGGAATGTATGTTCTATTGTGGGGGAAAAGCAATGATGCAAAGGAAACTGTGATGAAGCAGACACAAGCAGCTGAAGAAGGTGCGGATGTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

330

Amino Acids

36.3

Weight (kDa)

9.02

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	166 - 305	1.1e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca	FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica	MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica	Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis	pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis	RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata	RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora	Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii	Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa	Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha	Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana	Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	506
AccB1I	GGYRCC	1 cut(s)	614
AciI	CCGC	2 cut(s)	369, 980
AclWI	GGATC	2 cut(s)	736, 886
AcuI	CTGAAG	1 cut(s)	990
AfaI	GTAC	2 cut(s)	105, 584
AfiI	CCNNNNNNNGG	2 cut(s)	174, 529
AflII	CTTAAG	1 cut(s)	80
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	3 cut(s)	623, 682, 847
AjuI	GAANNNNNNNTTGG	2 cut(s)	674, 706
AloI	GAACNNNNNNTCC	2 cut(s)	891, 923
AluBI	AGCT	6 cut(s)	233, 374, 570, 596, 639, 968
AluI	AGCT	6 cut(s)	233, 374, 570, 596, 639, 968
Alw21I	GWGCWC	1 cut(s)	355
AlwI	GGATC	2 cut(s)	736, 886
ApeKI	GCWGC	4 cut(s)	467, 512, 791, 965
Asp700I	GAANNNNTTC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	776
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	776
BanI	GGYRCC	1 cut(s)	614
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	355
BbvCI	CCTCAGC	1 cut(s)	229
BbvI	GCAGC	4 cut(s)	479, 524, 803, 977
BccI	CCATC	1 cut(s)	638
BfaI	CTAG	3 cut(s)	302, 588, 887
BfrI	CTTAAG	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	506
BglII	AGATCT	1 cut(s)	342
BisI	GCNGC	4 cut(s)	468, 513, 792, 966
BlsI	GCNGC	4 cut(s)	469, 514, 793, 967
BmcAI	AGTACT	1 cut(s)	584
Bme18I	GGWCC	1 cut(s)	776
BmgT120I	GGNCC	1 cut(s)	776
BmiI	GGNNCC	3 cut(s)	264, 616, 777
BmsI	GCATC	2 cut(s)	12, 922
BpiI	GAAGAC	1 cut(s)	450
BpmI	CTGGAG	2 cut(s)	84, 738
Bpu10I	CCTNAGC	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	655
BsaJI	CCNNGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 529
Bse3DI	GCAATG	1 cut(s)	934
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	3 cut(s)	27, 756, 988
BseLI	CCNNNNNNNGG	2 cut(s)	174, 529
BseMI	GCAATG	1 cut(s)	934
BseMII	CTCAG	2 cut(s)	243, 639
BseRI	GAGGAG	1 cut(s)	475
BseXI	GCAGC	4 cut(s)	479, 524, 803, 977
BshNI	GGYRCC	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	355
BslFI	GGGAC	1 cut(s)	971
BslI	CCNNNNNNNGG	2 cut(s)	174, 529
BsmFI	GGGAC	1 cut(s)	971
BsmI	GAATGC	2 cut(s)	248, 418
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	342, 728, 878
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	2 cut(s)	369, 980
BspCNI	CTCAG	2 cut(s)	242, 640
BspLI	GGNNCC	3 cut(s)	264, 616, 777
BspMI	ACCTGC	1 cut(s)	506
BspPI	GGATC	2 cut(s)	736, 886
BspQI	GCTCTTC	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	614
BspTI	CTTAAG	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	934
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	3 cut(s)	342, 728, 878
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	31, 946
Bst6I	CTCTTC	1 cut(s)	328
BstAFI	CTTAAG	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	229, 648
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	3 cut(s)	27, 756, 988
BstKTI	GATC	3 cut(s)	345, 731, 881
BstMBI	GATC	3 cut(s)	342, 728, 878
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	667
BstV1I	GCAGC	4 cut(s)	479, 524, 803, 977
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	2 cut(s)	342, 878
BstYI	RGATCY	2 cut(s)	342, 878
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	27, 756, 988
BtsI	GCAGTG	1 cut(s)	500
BtsIMutI	CAGTG	1 cut(s)	500
BveI	ACCTGC	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	776
Csp6I	GTAC	2 cut(s)	104, 583
CviAII	CATG	7 cut(s)	37, 259, 425, 537, 658, 664, 756
CviQI	GTAC	2 cut(s)	104, 583
DdeI	CTNAG	2 cut(s)	229, 648
DpnI	GATC	3 cut(s)	344, 730, 880
DpnII	GATC	3 cut(s)	342, 728, 878
Eam1104I	CTCTTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	328
EciI	GGCGGA	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	776
Eco57I	CTGAAG	1 cut(s)	990
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	7 cut(s)	40, 262, 428, 540, 661, 667, 759
FaqI	GGGAC	1 cut(s)	971
FatI	CATG	7 cut(s)	36, 258, 424, 536, 657, 663, 755
Fnu4HI	GCNGC	4 cut(s)	468, 513, 792, 966
FokI	GGATG	2 cut(s)	34, 763
Fsp4HI	GCNGC	4 cut(s)	468, 513, 792, 966
FspBI	CTAG	3 cut(s)	302, 588, 887
GluI	GCNGC	4 cut(s)	468, 513, 792, 966
GsuI	CTGGAG	2 cut(s)	84, 738
Hin1II	CATG	7 cut(s)	40, 262, 428, 540, 661, 667, 759
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	2 cut(s)	66, 216
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	6 cut(s)	87, 106, 271, 313, 500, 786
Hpy188I	TCNGA	1 cut(s)	357
Hpy188III	TCNNGA	3 cut(s)	302, 634, 679
Hpy8I	GTNNAC	6 cut(s)	87, 106, 271, 313, 500, 786
HpyAV	CCTTC	3 cut(s)	616, 676, 968
HpyCH4III	ACNGT	2 cut(s)	31, 946
HpyCH4V	TGCA	2 cut(s)	248, 935
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	2 cut(s)	229, 648
Hsp92II	CATG	7 cut(s)	40, 262, 428, 540, 661, 667, 759
Kzo9I	GATC	3 cut(s)	342, 728, 878
LguI	GCTCTTC	1 cut(s)	328
LmnI	GCTCC	3 cut(s)	321, 371, 719
LpnPI	CCDG	7 cut(s)	48, 256, 279, 501, 702, 717, 824
Lsp1109I	GCAGC	4 cut(s)	479, 524, 803, 977
LweI	GCATC	2 cut(s)	12, 922
MaeI	CTAG	3 cut(s)	302, 588, 887
MaeIII	GTNAC	3 cut(s)	121, 184, 643
MalI	GATC	3 cut(s)	344, 730, 880
MboI	GATC	3 cut(s)	342, 728, 878
MboII	GAAGA	4 cut(s)	200, 345, 455, 983
MfeI	CAATTG	1 cut(s)	723
MflI	RGATCY	2 cut(s)	342, 878
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	3 cut(s)	7, 109, 723
MlyI	GAGTC	2 cut(s)	75, 210
MmeI	TCCRAC	1 cut(s)	672
MnlI	CCTC	4 cut(s)	238, 323, 453, 533
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	3 cut(s)	81, 701, 806
MslI	CAYNNNNRTG	4 cut(s)	257, 423, 662, 668
MspA1I	CMGCKG	1 cut(s)	968
MspCI	CTTAAG	1 cut(s)	80
MunI	CAATTG	1 cut(s)	723
Mva1269I	GAATGC	2 cut(s)	248, 418
MwoI	GCNNNNNNNGC	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	3 cut(s)	342, 728, 878
NlaIII	CATG	7 cut(s)	40, 262, 428, 540, 661, 667, 759
NlaIV	GGNNCC	3 cut(s)	264, 616, 777
NspI	RCATGY	1 cut(s)	667
PciI	ACATGT	1 cut(s)	663
PciSI	GCTCTTC	1 cut(s)	328
PctI	GAATGC	2 cut(s)	248, 418
PdmI	GAANNNNTTC	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	469, 514, 793, 967
PleI	GAGTC	2 cut(s)	74, 210
PpsI	GAGTC	2 cut(s)	74, 210
PscI	ACATGT	1 cut(s)	663
PspN4I	GGNNCC	3 cut(s)	264, 616, 777
PspPI	GGNCC	1 cut(s)	776
PsuI	RGATCY	2 cut(s)	342, 878
PvuII	CAGCTG	1 cut(s)	968
RsaI	GTAC	2 cut(s)	105, 584
RsaNI	GTAC	2 cut(s)	104, 583
RseI	CAYNNNNRTG	4 cut(s)	257, 423, 662, 668
SapI	GCTCTTC	1 cut(s)	328
SaqAI	TTAA	3 cut(s)	81, 701, 806
SatI	GCNGC	4 cut(s)	468, 513, 792, 966
Sau3AI	GATC	3 cut(s)	342, 728, 878
Sau96I	GGNCC	1 cut(s)	776
ScaI	AGTACT	1 cut(s)	584
SchI	GAGTC	2 cut(s)	75, 210
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	2 cut(s)	12, 922
SinI	GGWCC	1 cut(s)	776
SmiMI	CAYNNNNRTG	4 cut(s)	257, 423, 662, 668
SmlI	CTYRAG	2 cut(s)	80, 634
SmoI	CTYRAG	2 cut(s)	80, 634
Sse9I	AATT	3 cut(s)	7, 109, 723
SsiI	CCGC	2 cut(s)	369, 980
SspMI	CTAG	3 cut(s)	302, 588, 887
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	31, 946
TasI	AATT	3 cut(s)	7, 109, 723
TatI	WGTACW	2 cut(s)	103, 582
Tru1I	TTAA	3 cut(s)	81, 701, 806
Tru9I	TTAA	3 cut(s)	81, 701, 806
TscAI	CASTG	1 cut(s)	507
TseI	GCWGC	4 cut(s)	467, 512, 791, 965
TspDTI	ATGAA	5 cut(s)	241, 456, 525, 674, 965
TspRI	CASTG	1 cut(s)	507
Vha464I	CTTAAG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	776
XbaI	TCTAGA	1 cut(s)	301
XceI	RCATGY	1 cut(s)	667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	3 cut(s)	302, 588, 887
ZrmI	AGTACT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.