Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000665

Physical Location & Seq

Genomic Coordinates Reverse (-)

53426815 .. 53428962

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG301800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGTGAATTACAGAGAATGGATGCCTACTGTTGCCATGGTTGCCATAAACCTAGCTTTTGCTGGAGTCAATGTGCTTCTTAAGTTGACTTTGGATAAAGGAGTACACAATTTGGTGGTTGTTACTTATCGGCAGTTGATTTCTTGTGTCTTATTGACACCGATTGCCTTGTTTTGGGAAAGCAGAAAAAGCAGACCCGAACTTGCAGCTGGCATCATATGCCACCTTTTCTTCAGTGCTCTAATTGGGGTAGCATTCACACAATACTTGTTTCTTCTTGGACTCCAATACACCTCAACTACCTATTCCTGTGCATTCATCAACATGGTTCCTGTGAACACTTTCCTATTGGCACTACCATTTGGTATAGAGAAAGTAAACATTAGAAGCAAGGGAGGAAGAGCAAAGATCTTGGGTGCTCTTATATGTATTGGCGGAGCTTTGTCATTGACATTATACAAAGGAACGCCACTAACCAATCAGCATTCCCATGCCACATCTCAAAATGAAGACCATGACTATATGAGGAGAGCAGCAAAGGATAAAGAGAAGTGGGCAGTTGGTTCACTGCTTTTAGCAGCAGGTTGCCTCTTGTGGGCTTCATGGTTTCTCATACAAGCCAAGATTGGCAAGAGCTACCCATTTCAGTACTCTAGCACAGCTATCTTGTCCTTCTTTGGTGCCATTCAATCAGCCATCTTGAGCTTGGTTACTGAGAGAAACATGAACATGTCAATGTGGGTCTTAAAGGGGGAGTTGGAGATATTAAGTGTCTTATATGCTGGAGCAATTGGATCAGGGTTGTGCTATGTAGGGATGTCATGGTGTGTGAAACAAAAGGGTCCATTGTTTACAGCAGCATTTACCCCCTTAACCCAGATTTTTGTGGCTATGTTTGACTTCTCAACCTTGAAAGAACAAATCTATCTTGGAAGTGTGGTGGGATCTGTTCTAGTCATAGTGGGAATGTATGTTCTATTGTGGGGGAAAAGCAATGATGCAAAGGAAACTGTGATGAAGCAGACACAAGCAGCTGAAGAAGGTGCGGATGTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

352

Amino Acids

38.62

Weight (kDa)

9.06

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	12 - 147	6e-10	EamA-like transporter family
EamA	PF00892	188 - 327	1.3e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca	FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica	MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica	Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis	pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis	RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata	RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora	Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii	Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa	Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha	Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana	Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	572
AccB1I	GGYRCC	1 cut(s)	680
AciI	CCGC	2 cut(s)	435, 1046
AclWI	GGATC	2 cut(s)	802, 952
AcuI	CTGAAG	2 cut(s)	217, 1056
AfaI	GTAC	2 cut(s)	105, 650
AfiI	CCNNNNNNNGG	2 cut(s)	174, 595
AflII	CTTAAG	1 cut(s)	80
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	2 cut(s)	689, 913
AloI	GAACNNNNNNTCC	2 cut(s)	957, 989
AluBI	AGCT	7 cut(s)	56, 209, 440, 636, 662, 705, 1034
AluI	AGCT	7 cut(s)	56, 209, 440, 636, 662, 705, 1034
Alw21I	GWGCWC	2 cut(s)	241, 421
AlwI	GGATC	2 cut(s)	802, 952
ApeKI	GCWGC	5 cut(s)	206, 533, 578, 857, 1031
Asp700I	GAANNNNTTC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	842
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	842
BanI	GGYRCC	1 cut(s)	680
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	2 cut(s)	241, 421
BbvI	GCAGC	5 cut(s)	218, 545, 590, 869, 1043
BccI	CCATC	1 cut(s)	704
BfaI	CTAG	3 cut(s)	53, 654, 953
BfrI	CTTAAG	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	572
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	5 cut(s)	207, 534, 579, 858, 1032
BlsI	GCNGC	5 cut(s)	208, 535, 580, 859, 1033
BmcAI	AGTACT	1 cut(s)	650
Bme18I	GGWCC	1 cut(s)	842
BmgT120I	GGNCC	1 cut(s)	842
BmiI	GGNNCC	3 cut(s)	330, 682, 843
BmsI	GCATC	3 cut(s)	12, 222, 988
BpiI	GAAGAC	1 cut(s)	516
BpmI	CTGGAG	2 cut(s)	84, 804
BpuEI	CTTGAG	1 cut(s)	721
BsaJI	CCNNGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 595
Bse3DI	GCAATG	1 cut(s)	1000
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	3 cut(s)	27, 822, 1054
BseLI	CCNNNNNNNGG	2 cut(s)	174, 595
BseMI	GCAATG	1 cut(s)	1000
BseMII	CTCAG	1 cut(s)	705
BseRI	GAGGAG	1 cut(s)	541
BseXI	GCAGC	5 cut(s)	218, 545, 590, 869, 1043
BshNI	GGYRCC	1 cut(s)	680
BsiHKAI	GWGCWC	2 cut(s)	241, 421
BslFI	GGGAC	1 cut(s)	1037
BslI	CCNNNNNNNGG	2 cut(s)	174, 595
BsmFI	GGGAC	1 cut(s)	1037
BsmI	GAATGC	3 cut(s)	254, 314, 484
Bsp1286I	GDGCHC	2 cut(s)	241, 421
Bsp143I	GATC	3 cut(s)	408, 794, 944
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	2 cut(s)	435, 1046
BspCNI	CTCAG	1 cut(s)	706
BspLI	GGNNCC	3 cut(s)	330, 682, 843
BspMI	ACCTGC	1 cut(s)	572
BspPI	GGATC	2 cut(s)	802, 952
BspQI	GCTCTTC	1 cut(s)	394
BspT107I	GGYRCC	1 cut(s)	680
BspTI	CTTAAG	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	1000
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	3 cut(s)	408, 794, 944
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	31, 1012
Bst6I	CTCTTC	1 cut(s)	394
BstAFI	CTTAAG	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	714
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	3 cut(s)	27, 822, 1054
BstKTI	GATC	3 cut(s)	411, 797, 947
BstMBI	GATC	3 cut(s)	408, 794, 944
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 189, 219
BstNSI	RCATGY	1 cut(s)	733
BstV1I	GCAGC	5 cut(s)	218, 545, 590, 869, 1043
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	2 cut(s)	408, 944
BstYI	RGATCY	2 cut(s)	408, 944
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	27, 822, 1054
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	2 cut(s)	241, 566
BveI	ACCTGC	1 cut(s)	572
Cac8I	GCNNGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	842
Csp6I	GTAC	2 cut(s)	104, 649
CviAII	CATG	8 cut(s)	37, 325, 491, 515, 603, 724, 730, 822
CviQI	GTAC	2 cut(s)	104, 649
DdeI	CTNAG	1 cut(s)	714
DpnI	GATC	3 cut(s)	410, 796, 946
DpnII	GATC	3 cut(s)	408, 794, 944
Eam1104I	CTCTTC	1 cut(s)	394
EarI	CTCTTC	1 cut(s)	394
EciI	GGCGGA	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	842
Eco57I	CTGAAG	2 cut(s)	217, 1056
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	8 cut(s)	40, 328, 494, 518, 606, 727, 733, 825
FaqI	GGGAC	1 cut(s)	1037
FatI	CATG	8 cut(s)	36, 324, 490, 514, 602, 723, 729, 821
FauNDI	CATATG	1 cut(s)	218
Fnu4HI	GCNGC	5 cut(s)	207, 534, 579, 858, 1032
FokI	GGATG	2 cut(s)	34, 829
Fsp4HI	GCNGC	5 cut(s)	207, 534, 579, 858, 1032
FspBI	CTAG	3 cut(s)	53, 654, 953
GluI	GCNGC	5 cut(s)	207, 534, 579, 858, 1032
GsuI	CTGGAG	2 cut(s)	84, 804
Hin1II	CATG	8 cut(s)	40, 328, 494, 518, 606, 727, 733, 825
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	2 cut(s)	66, 282
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	6 cut(s)	87, 106, 337, 379, 566, 852
Hpy188III	TCNNGA	1 cut(s)	700
Hpy8I	GTNNAC	6 cut(s)	87, 106, 337, 379, 566, 852
HpyAV	CCTTC	2 cut(s)	682, 1034
HpyCH4III	ACNGT	2 cut(s)	31, 1012
HpyCH4V	TGCA	3 cut(s)	206, 314, 1001
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 189, 219
HpyF3I	CTNAG	1 cut(s)	714
Hsp92II	CATG	8 cut(s)	40, 328, 494, 518, 606, 727, 733, 825
Kzo9I	GATC	3 cut(s)	408, 794, 944
LguI	GCTCTTC	1 cut(s)	394
LmnI	GCTCC	2 cut(s)	437, 785
LpnPI	CCDG	8 cut(s)	48, 195, 322, 345, 567, 768, 783, 890
Lsp1109I	GCAGC	5 cut(s)	218, 545, 590, 869, 1043
LweI	GCATC	3 cut(s)	12, 222, 988
MaeI	CTAG	3 cut(s)	53, 654, 953
MaeIII	GTNAC	2 cut(s)	121, 709
MalI	GATC	3 cut(s)	410, 796, 946
MboI	GATC	3 cut(s)	408, 794, 944
MboII	GAAGA	5 cut(s)	223, 266, 411, 521, 1049
MfeI	CAATTG	1 cut(s)	789
MflI	RGATCY	2 cut(s)	408, 944
MhlI	GDGCHC	2 cut(s)	241, 421
MluCI	AATT	4 cut(s)	7, 109, 243, 789
MlyI	GAGTC	2 cut(s)	75, 276
MmeI	TCCRAC	1 cut(s)	738
MnlI	CCTC	4 cut(s)	304, 389, 519, 599
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	4 cut(s)	81, 746, 767, 872
MslI	CAYNNNNRTG	4 cut(s)	323, 489, 728, 734
MspA1I	CMGCKG	2 cut(s)	209, 1034
MspCI	CTTAAG	1 cut(s)	80
MunI	CAATTG	1 cut(s)	789
Mva1269I	GAATGC	3 cut(s)	254, 314, 484
MwoI	GCNNNNNNNGC	3 cut(s)	41, 189, 219
NcoI	CCATGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	218
NdeII	GATC	3 cut(s)	408, 794, 944
NlaIII	CATG	8 cut(s)	40, 328, 494, 518, 606, 727, 733, 825
NlaIV	GGNNCC	3 cut(s)	330, 682, 843
NspI	RCATGY	1 cut(s)	733
PciI	ACATGT	1 cut(s)	729
PciSI	GCTCTTC	1 cut(s)	394
PctI	GAATGC	3 cut(s)	254, 314, 484
PdmI	GAANNNNTTC	1 cut(s)	341
PkrI	GCNGC	5 cut(s)	208, 535, 580, 859, 1033
PleI	GAGTC	2 cut(s)	74, 276
PpsI	GAGTC	2 cut(s)	74, 276
PscI	ACATGT	1 cut(s)	729
PspN4I	GGNNCC	3 cut(s)	330, 682, 843
PspPI	GGNCC	1 cut(s)	842
PsuI	RGATCY	2 cut(s)	408, 944
PvuII	CAGCTG	2 cut(s)	209, 1034
RsaI	GTAC	2 cut(s)	105, 650
RsaNI	GTAC	2 cut(s)	104, 649
RseI	CAYNNNNRTG	4 cut(s)	323, 489, 728, 734
SapI	GCTCTTC	1 cut(s)	394
SaqAI	TTAA	4 cut(s)	81, 746, 767, 872
SatI	GCNGC	5 cut(s)	207, 534, 579, 858, 1032
Sau3AI	GATC	3 cut(s)	408, 794, 944
Sau96I	GGNCC	1 cut(s)	842
ScaI	AGTACT	1 cut(s)	650
SchI	GAGTC	2 cut(s)	75, 276
SduI	GDGCHC	2 cut(s)	241, 421
SfaNI	GCATC	3 cut(s)	12, 222, 988
SinI	GGWCC	1 cut(s)	842
SmiMI	CAYNNNNRTG	4 cut(s)	323, 489, 728, 734
SmlI	CTYRAG	2 cut(s)	80, 700
SmoI	CTYRAG	2 cut(s)	80, 700
Sse9I	AATT	4 cut(s)	7, 109, 243, 789
SsiI	CCGC	2 cut(s)	435, 1046
SspMI	CTAG	3 cut(s)	53, 654, 953
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	31, 1012
TasI	AATT	4 cut(s)	7, 109, 243, 789
TatI	WGTACW	2 cut(s)	103, 648
Tru1I	TTAA	4 cut(s)	81, 746, 767, 872
Tru9I	TTAA	4 cut(s)	81, 746, 767, 872
TscAI	CASTG	2 cut(s)	241, 573
TseI	GCWGC	5 cut(s)	206, 533, 578, 857, 1031
TspDTI	ATGAA	5 cut(s)	307, 522, 591, 740, 1031
TspRI	CASTG	2 cut(s)	241, 573
Vha464I	CTTAAG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	842
XceI	RCATGY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	703
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	3 cut(s)	53, 654, 953
ZrmI	AGTACT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.