FvH4_5g10300

WAT1-related protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
5892393 .. 5894498
2106 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g10300.t1

Sequence Viewer

Length: 1125 bp
ATGGCCGGGGAGATGAAGGGTTTCGACGAATGGAAGCCTTTCATTGCTATGGTAGCCATAGATTTTTCGTTTGCCATAGTGAATATTCTGCTGAAGAAAGTGCTTGATGAAGGAATGAACCATTTGGTTCTCATTACGTATCGGTTGACAATTTCGACCATCTTCTTGGCTCCAATTAGCTACTTTTGGGAAAGGAATAGTAGACCAAAGCTCACACCAAGGATTGTGTGTTACCTCTTCCTGAGTGCCATTGTTGGGTCATCCATAACACAGTACTTCTTTCTCCTTGGAATCCAATACACATCTGCTACTTTTGCTTGTGCCTTTGTCAACATGGTGCCTATGGTCACATTCATCATGGCATTACCGTTCGGGATAGAGACGGTGGACTTGAAATGCAACAGTGGTAGAGCCAAAGTACTCGGAACACTGGTGTGCTTATGCGGTGCAGTGATATTGACACTTTACAAAGGAGTTCCTTTGTTTGATCATTCGAAATCTACGGGTACTCAAATTACCATGATGGATCATGGTATCAAGCTTAGCAGCACCAGAAATAAAGAGAGATGGACTATTGGTTCAGTAGCTTTGGTTGCAGGAACTCTGTTATGGTCTTCATGGTTTCTAGTACAATCAAACATAAGCAAGCTATATCCATGTCAGTATTCCAGCACTACTATAATGAACTTCTTCGGTGCCATTCAGTCAGCAATCTTAGGTTTGTGCACTAGTAGAAACCTCTCCGTGTGGGTTCTGAGGGGAAAGGCTCAAGTCCTCACTGTCATGTTTGCTGGGATGATAGCATCAGGCTTGGGCTTTGTGGGGATGTCATGGTGTGTGAAGAAAAGGGGACCTGTGTTTACTGCAGCATTTAGCCCCCTTGTTCAGATTATGGCTGCGATGATCGGAATCCCAATGTTTCATGAACAACTCCACGTTGGAAGCTTGTTGGGGTCTATCATTGTGATAATTGGCTTGTACATTCTTCTCTGGGGAAAGAAAAAAGAAATGCAGAAGTGTAAGTTAGAAGAAGCCCAAGAAGCCGAAGCGATGAAGGAGCAGGAGCAACCACCGCTGCCAGTCACCATCAGAGTCTCTGTTGATGATGATTCAAGGTGTCCATGA

Protein Analysis

375

Amino Acids

41.41

Weight (kDa)

9.11

Isoelectric Point (pI)

30.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 15 - 154 6.4e-14 EamA-like transporter family
EamA PF00892 192 - 330 5.9e-08 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000665)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 337, 695
AccI GTMKAC 1 cut(s) 202
AciI CCGC 2 cut(s) 444, 1073
AclWI GGATC 1 cut(s) 534
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 5 cut(s) 275, 420, 508, 630, 980
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 2 cut(s) 394, 1113
AhlI ACTAGT 1 cut(s) 728
AleI CACNNNNGTG 1 cut(s) 433
AloI GAACNNNNNNTCC 2 cut(s) 562, 594
AluBI AGCT 6 cut(s) 180, 211, 541, 587, 649, 945
AluI AGCT 6 cut(s) 180, 211, 541, 587, 649, 945
Alw21I GWGCWC 1 cut(s) 728
Alw26I GTCTC 2 cut(s) 374, 1099
Alw44I GTGCAC 1 cut(s) 724
AlwI GGATC 1 cut(s) 534
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 724
ApeKI GCWGC 4 cut(s) 546, 866, 896, 1075
Asp700I GAANNNNTTC 3 cut(s) 20, 38, 689
AspS9I GGNCC 1 cut(s) 851
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 1075
AsuII TTCGAA 1 cut(s) 494
AvaII GGWCC 1 cut(s) 851
BaeGI GKGCMC 1 cut(s) 728
BanI GGYRCC 2 cut(s) 337, 695
BbsI GAAGAC 1 cut(s) 606
Bbv12I GWGCWC 1 cut(s) 728
BbvI GCAGC 4 cut(s) 558, 878, 883, 1062
BccI CCATC 4 cut(s) 167, 517, 561, 1094
BclI TGATCA 1 cut(s) 487
BcnI CCSGG 1 cut(s) 7
BcoDI GTCTC 2 cut(s) 374, 1099
BcuI ACTAGT 1 cut(s) 728
BfaI CTAG 2 cut(s) 626, 729
BfmI CTRYAG 1 cut(s) 864
BisI GCNGC 4 cut(s) 547, 867, 897, 1076
BlpI GCTNAGC 1 cut(s) 542
BlsI GCNGC 4 cut(s) 548, 868, 898, 1077
BmcAI AGTACT 2 cut(s) 275, 420
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 851
BmgT120I GGNCC 1 cut(s) 851
BmiI GGNNCC 4 cut(s) 171, 339, 697, 852
BmrFI CCNGG 1 cut(s) 7
BmsI GCATC 1 cut(s) 812
BpiI GAAGAC 1 cut(s) 606
Bpu1102I GCTNAGC 1 cut(s) 542
Bpu14I TTCGAA 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 753
BpuMI CCSGG 1 cut(s) 7
BsaAI YACGTR 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 908
BsaJI CCNNGG 3 cut(s) 6, 218, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 2 cut(s) 435, 1079
Bse3DI GCAATG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 908
BseDI CCNNGG 3 cut(s) 6, 218, 286
BseGI GGATG 3 cut(s) 260, 801, 831
BseJI GATNNNNATC 1 cut(s) 908
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 2 cut(s) 233, 746
BseNI ACTGG 2 cut(s) 435, 1079
BseSI GKGCMC 1 cut(s) 728
BseXI GCAGC 4 cut(s) 558, 878, 883, 1062
BseYI CCCAGC 1 cut(s) 791
BsgI GTGCAG 1 cut(s) 468
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 337, 695
BsiHKAI GWGCWC 1 cut(s) 728
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 1 cut(s) 864
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 2 cut(s) 374, 1099
BsmBI CGTCTC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 864
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 728
Bsp1407I TGTACA 1 cut(s) 978
Bsp143I GATC 3 cut(s) 487, 526, 903
Bsp1720I GCTNAGC 1 cut(s) 542
BspACI CCGC 2 cut(s) 444, 1073
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 234, 747
BspHI TCATGA 1 cut(s) 922
BspLI GGNNCC 4 cut(s) 171, 339, 697, 852
BspMAI CTGCAG 1 cut(s) 868
BspPI GGATC 1 cut(s) 534
BspT104I TTCGAA 1 cut(s) 494
BspT107I GGYRCC 2 cut(s) 337, 695
BsrDI GCAATG 1 cut(s) 42
BsrGI TGTACA 1 cut(s) 978
BsrI ACTGG 2 cut(s) 435, 1079
BssECI CCNNGG 3 cut(s) 6, 218, 286
BssMI GATC 3 cut(s) 487, 526, 903
BssT1I CCWWGG 2 cut(s) 218, 286
Bst4CI ACNGT 5 cut(s) 273, 369, 385, 404, 781
Bst6I CTCTTC 1 cut(s) 242
BstAUI TGTACA 1 cut(s) 978
BstBAI YACGTR 1 cut(s) 138
BstBI TTCGAA 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 647
BstDEI CTNAG 4 cut(s) 242, 542, 715, 755
BstF5I GGATG 3 cut(s) 260, 801, 831
BstKTI GATC 3 cut(s) 490, 529, 906
BstMAI GTCTC 2 cut(s) 374, 1099
BstMBI GATC 3 cut(s) 487, 526, 903
BstMWI GCNNNNNNNGC 5 cut(s) 53, 314, 593, 1040, 1072
BstSCI CCNGG 1 cut(s) 5
BstSFI CTRYAG 1 cut(s) 864
BstSLI GKGCMC 1 cut(s) 728
BstSNI TACGTA 1 cut(s) 138
BstV1I GCAGC 4 cut(s) 558, 878, 883, 1062
BstV2I GAAGAC 1 cut(s) 606
BstXI CCANNNNNNTGG 1 cut(s) 166
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 2 cut(s) 914, 1064
BtsCI GGATG 3 cut(s) 260, 801, 831
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 4 cut(s) 409, 428, 456, 777
Cac8I GCNNGC 1 cut(s) 647
CciI TCATGA 1 cut(s) 922
Cfr13I GGNCC 1 cut(s) 851
Csp6I GTAC 5 cut(s) 274, 419, 507, 629, 979
CviQI GTAC 5 cut(s) 274, 419, 507, 629, 979
DdeI CTNAG 4 cut(s) 242, 542, 715, 755
DpnI GATC 3 cut(s) 489, 528, 905
DpnII GATC 3 cut(s) 487, 526, 903
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco105I TACGTA 1 cut(s) 138
Eco130I CCWWGG 2 cut(s) 218, 286
Eco47I GGWCC 1 cut(s) 851
Eco57I CTGAAG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 851
EcoT14I CCWWGG 2 cut(s) 218, 286
ErhI CCWWGG 2 cut(s) 218, 286
Esp3I CGTCTC 1 cut(s) 374
FaqI GGGAC 1 cut(s) 864
FbaI TGATCA 1 cut(s) 487
FblI GTMKAC 1 cut(s) 202
Fnu4HI GCNGC 4 cut(s) 547, 867, 897, 1076
FokI GGATG 3 cut(s) 247, 808, 838
Fsp4HI GCNGC 4 cut(s) 547, 867, 897, 1076
FspBI CTAG 2 cut(s) 626, 729
GluI GCNGC 4 cut(s) 547, 867, 897, 1076
GsaI CCCAGC 1 cut(s) 795
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 6
HincII GTYRAC 2 cut(s) 147, 331
HindII GTYRAC 2 cut(s) 147, 331
HindIII AAGCTT 2 cut(s) 539, 943
HinfI GANTC 4 cut(s) 291, 909, 1092, 1109
HpaII CCGG 1 cut(s) 6
HphI GGTGA 1 cut(s) 1075
Hpy166II GTNNAC 6 cut(s) 147, 203, 331, 388, 726, 861
Hpy188I TCNGA 5 cut(s) 425, 756, 888, 908, 1091
Hpy188III TCNNGA 3 cut(s) 241, 373, 923
Hpy8I GTNNAC 6 cut(s) 147, 203, 331, 388, 726, 861
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 3 cut(s) 10, 104, 1048
HpyCH4III ACNGT 5 cut(s) 273, 369, 385, 404, 781
HpyCH4IV ACGT 2 cut(s) 137, 936
HpyCH4V TGCA 6 cut(s) 399, 449, 596, 726, 866, 1012
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 314, 593, 1040, 1072
HpyF3I CTNAG 4 cut(s) 242, 542, 715, 755
HpySE526I ACGT 2 cut(s) 137, 936
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 3 cut(s) 487, 526, 903
LmnI GCTCC 3 cut(s) 175, 1057, 1063
Lsp1109I GCAGC 4 cut(s) 558, 878, 883, 1062
LweI GCATC 1 cut(s) 812
MaeI CTAG 2 cut(s) 626, 729
MaeII ACGT 2 cut(s) 137, 936
MaeIII GTNAC 3 cut(s) 230, 346, 1081
MalI GATC 3 cut(s) 489, 528, 905
MboI GATC 3 cut(s) 487, 526, 903
MboII GAAGA 8 cut(s) 106, 154, 229, 606, 682, 853, 977, 1040
MhlI GDGCHC 1 cut(s) 728
MluCI AATT 4 cut(s) 150, 174, 513, 969
MlyI GAGTC 1 cut(s) 1101
MmeI TCCRAC 1 cut(s) 919
MnlI CCTC 4 cut(s) 245, 749, 750, 785
MroXI GAANNNNTTC 3 cut(s) 20, 38, 689
MslI CAYNNNNRTG 3 cut(s) 47, 433, 782
MspA1I CMGCKG 1 cut(s) 1075
MspI CCGG 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 7
MwoI GCNNNNNNNGC 5 cut(s) 53, 314, 593, 1040, 1072
NciI CCSGG 1 cut(s) 7
NdeII GATC 3 cut(s) 487, 526, 903
NlaIV GGNNCC 4 cut(s) 171, 339, 697, 852
NmuCI GTSAC 2 cut(s) 346, 1081
NspV TTCGAA 1 cut(s) 494
OliI CACNNNNGTG 1 cut(s) 433
PagI TCATGA 1 cut(s) 922
PdmI GAANNNNTTC 3 cut(s) 20, 38, 689
PfeI GAWTC 3 cut(s) 291, 909, 1109
PkrI GCNGC 4 cut(s) 548, 868, 898, 1077
PleI GAGTC 1 cut(s) 1100
PpsI GAGTC 1 cut(s) 1100
Ppu21I YACGTR 1 cut(s) 138
PpuMI RGGWCCY 1 cut(s) 851
Psp5II RGGWCCY 1 cut(s) 851
PspFI CCCAGC 1 cut(s) 791
PspN4I GGNNCC 4 cut(s) 171, 339, 697, 852
PspPI GGNCC 1 cut(s) 851
PspPPI RGGWCCY 1 cut(s) 851
PstI CTGCAG 1 cut(s) 868
RsaI GTAC 5 cut(s) 275, 420, 508, 630, 980
RsaNI GTAC 5 cut(s) 274, 419, 507, 629, 979
RseI CAYNNNNRTG 3 cut(s) 47, 433, 782
SatI GCNGC 4 cut(s) 547, 867, 897, 1076
Sau3AI GATC 3 cut(s) 487, 526, 903
Sau96I GGNCC 1 cut(s) 851
ScaI AGTACT 2 cut(s) 275, 420
SchI GAGTC 1 cut(s) 1101
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 728
SfaNI GCATC 1 cut(s) 812
SfcI CTRYAG 1 cut(s) 864
SfuI TTCGAA 1 cut(s) 494
SinI GGWCC 1 cut(s) 851
SmiMI CAYNNNNRTG 3 cut(s) 47, 433, 782
SmlI CTYRAG 1 cut(s) 768
SmoI CTYRAG 1 cut(s) 768
SnaBI TACGTA 1 cut(s) 138
SpeI ACTAGT 1 cut(s) 728
Sse9I AATT 4 cut(s) 150, 174, 513, 969
SsiI CCGC 2 cut(s) 444, 1073
SspI AATATT 1 cut(s) 85
SspMI CTAG 2 cut(s) 626, 729
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 2 cut(s) 218, 286
TaaI ACNGT 5 cut(s) 273, 369, 385, 404, 781
TaiI ACGT 2 cut(s) 140, 939
TaqI TCGA 3 cut(s) 24, 155, 494
TasI AATT 4 cut(s) 150, 174, 513, 969
TatI WGTACW 4 cut(s) 273, 418, 628, 978
TfiI GAWTC 3 cut(s) 291, 909, 1109
TscAI CASTG 4 cut(s) 409, 435, 456, 784
TseFI GTSAC 2 cut(s) 346, 1081
TseI GCWGC 4 cut(s) 546, 866, 896, 1075
Tsp45I GTSAC 2 cut(s) 346, 1081
TspGWI ACGGA 1 cut(s) 733
TspRI CASTG 4 cut(s) 409, 435, 456, 784
VneI GTGCAC 1 cut(s) 724
VpaK11BI GGWCC 1 cut(s) 851
XmiI GTMKAC 1 cut(s) 202
XmnI GAANNNNTTC 3 cut(s) 20, 38, 689
XspI CTAG 2 cut(s) 626, 729
ZrmI AGTACT 2 cut(s) 275, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.