Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030043.1

Orthogroup ID

OG0000665

Physical Location & Seq

Genomic Coordinates Forward (+)

3070 .. 5209

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030043.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atggtgaattacagagaatggatgcctactgttgccatggttgccataaacctagcttttgctggagtcaatgtccttcttaagttgactttggatcaaggagtacacaatttggtggttgttacttatcggcagttgatttcttgtgtcttattgacacccattgccttgttttgggaacgcagaaaaagcagacccgaacctgcagctggcatcatatgccaccttttcttcagtgctctaattggggtaacattcacacaatacttgtttcttcttggactccaatacacctcagctacctattcctgtgcattcatcaacatggttcctgtgaacactttcctattggcactaccatttggtctagagaaagtaaacattaggagcaagggaggcagagcaaagatcttaggtgctctgatatgtattggtggagctttgtcattgacattatacaaaggaacgccactaaccaatcaacattctcatgccacatctcaaaacgaagaccatgattatatgaggagagcagcaaaggataaagagaagtgggcagttggttccctgcttttagcagcaggttgcctcttgtgggcttcatggtttctcatacaagccaagattggcaagagctacccatttcagtactctagcacagctatcttgtccttcttcggtgccattcaatcagccatcttgagcttggttaccgagagaaacatgaacatgtcaatgtgggttttgaaggggaagttggagatattaggagcaaactgtagttgttgtcctgctgctaaaaggttgtcattgttgaccagtgtggtgggatctgtcctagtcatagtgggaatgtatgttctactgtgggggaaaagcaatgatgcaaaggaaactgtgatgaagcagacacaagcagctgaagaaggtgcggatgtcccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

314

Amino Acids

34.41

Weight (kDa)

9.31

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca	FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica	MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica	Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis	pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis	RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata	RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora	Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii	Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa	Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha	Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana	Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	211, 572
AccB1I	GGYRCC	1 cut(s)	680
AciI	CCGC	1 cut(s)	932
AclWI	GGATC	2 cut(s)	102, 838
AcuI	CTGAAG	2 cut(s)	217, 942
AfaI	GTAC	2 cut(s)	105, 650
AfiI	CCNNNNNNNGG	3 cut(s)	174, 209, 595
AflII	CTTAAG	1 cut(s)	80
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	2 cut(s)	689, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	740, 772
AloI	GAACNNNNNNTCC	2 cut(s)	843, 875
AluBI	AGCT	8 cut(s)	56, 209, 299, 440, 636, 662, 705, 920
AluI	AGCT	8 cut(s)	56, 209, 299, 440, 636, 662, 705, 920
Alw21I	GWGCWC	2 cut(s)	241, 421
AlwI	GGATC	2 cut(s)	102, 838
ApeKI	GCWGC	5 cut(s)	206, 533, 578, 794, 917
Asp700I	GAANNNNTTC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	680
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	2 cut(s)	241, 421
BbvCI	CCTCAGC	1 cut(s)	295
BbvI	GCAGC	5 cut(s)	218, 545, 590, 781, 929
BccI	CCATC	1 cut(s)	704
BfaI	CTAG	4 cut(s)	53, 368, 654, 839
BfmI	CTRYAG	2 cut(s)	204, 778
BfrI	CTTAAG	1 cut(s)	80
BfuAI	ACCTGC	2 cut(s)	211, 572
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	5 cut(s)	207, 534, 579, 795, 918
BlsI	GCNGC	5 cut(s)	208, 535, 580, 796, 919
BmcAI	AGTACT	1 cut(s)	650
BmiI	GGNNCC	3 cut(s)	330, 565, 682
BmsI	GCATC	3 cut(s)	12, 222, 874
BpiI	GAAGAC	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	721
BsaJI	CCNNGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 209, 595
Bse1I	ACTGG	1 cut(s)	819
Bse3DI	GCAATG	2 cut(s)	162, 886
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	27, 940
BseLI	CCNNNNNNNGG	3 cut(s)	174, 209, 595
BseMI	GCAATG	2 cut(s)	162, 886
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	819
BseRI	GAGGAG	1 cut(s)	541
BseXI	GCAGC	5 cut(s)	218, 545, 590, 781, 929
BshNI	GGYRCC	1 cut(s)	680
BsiHKAI	GWGCWC	2 cut(s)	241, 421
BslFI	GGGAC	1 cut(s)	923
BslI	CCNNNNNNNGG	3 cut(s)	174, 209, 595
BsmFI	GGGAC	1 cut(s)	923
BsmI	GAATGC	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	241, 421
Bsp143I	GATC	3 cut(s)	94, 408, 830
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	1 cut(s)	932
BspCNI	CTCAG	1 cut(s)	308
BspLI	GGNNCC	3 cut(s)	330, 565, 682
BspMAI	CTGCAG	1 cut(s)	208
BspMI	ACCTGC	2 cut(s)	211, 572
BspPI	GGATC	2 cut(s)	102, 838
BspT107I	GGYRCC	1 cut(s)	680
BspTI	CTTAAG	1 cut(s)	80
BsrDI	GCAATG	2 cut(s)	162, 886
BsrI	ACTGG	1 cut(s)	819
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	3 cut(s)	94, 408, 830
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	4 cut(s)	31, 779, 867, 898
BstAFI	CTTAAG	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	295, 412
BstDSI	CCRYGG	1 cut(s)	36
BstEII	GGTNACC	1 cut(s)	709
BstF5I	GGATG	2 cut(s)	27, 940
BstKTI	GATC	3 cut(s)	97, 411, 833
BstMBI	GATC	3 cut(s)	94, 408, 830
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 189, 219, 396
BstNSI	RCATGY	1 cut(s)	733
BstPI	GGTNACC	1 cut(s)	709
BstSFI	CTRYAG	2 cut(s)	204, 778
BstV1I	GCAGC	5 cut(s)	218, 545, 590, 781, 929
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	2 cut(s)	408, 830
BstXI	CCANNNNNNTGG	1 cut(s)	826
BstYI	RGATCY	2 cut(s)	408, 830
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	27, 940
BtsIMutI	CAGTG	2 cut(s)	241, 826
BveI	ACCTGC	2 cut(s)	211, 572
Cac8I	GCNNGC	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	104, 649
CviAII	CATG	7 cut(s)	37, 325, 491, 515, 603, 724, 730
CviQI	GTAC	2 cut(s)	104, 649
DdeI	CTNAG	2 cut(s)	295, 412
DpnI	GATC	3 cut(s)	96, 410, 832
DpnII	GATC	3 cut(s)	94, 408, 830
Eco130I	CCWWGG	1 cut(s)	36
Eco57I	CTGAAG	2 cut(s)	217, 942
Eco91I	GGTNACC	1 cut(s)	709
EcoO65I	GGTNACC	1 cut(s)	709
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	7 cut(s)	40, 328, 494, 518, 606, 727, 733
FaqI	GGGAC	1 cut(s)	923
FatI	CATG	7 cut(s)	36, 324, 490, 514, 602, 723, 729
FauNDI	CATATG	1 cut(s)	218
Fnu4HI	GCNGC	5 cut(s)	207, 534, 579, 795, 918
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	5 cut(s)	207, 534, 579, 795, 918
FspBI	CTAG	4 cut(s)	53, 368, 654, 839
GluI	GCNGC	5 cut(s)	207, 534, 579, 795, 918
GsuI	CTGGAG	1 cut(s)	84
Hin1II	CATG	7 cut(s)	40, 328, 494, 518, 606, 727, 733
HincII	GTYRAC	2 cut(s)	87, 816
HindII	GTYRAC	2 cut(s)	87, 816
HinfI	GANTC	2 cut(s)	66, 282
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	5 cut(s)	87, 106, 337, 379, 816
Hpy188I	TCNGA	1 cut(s)	423
Hpy188III	TCNNGA	2 cut(s)	368, 700
Hpy8I	GTNNAC	5 cut(s)	87, 106, 337, 379, 816
HpyAV	CCTTC	4 cut(s)	86, 682, 742, 920
HpyCH4III	ACNGT	4 cut(s)	31, 779, 867, 898
HpyCH4V	TGCA	3 cut(s)	206, 314, 887
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 189, 219, 396
HpyF3I	CTNAG	2 cut(s)	295, 412
Hsp92II	CATG	7 cut(s)	40, 328, 494, 518, 606, 727, 733
Kzo9I	GATC	3 cut(s)	94, 408, 830
LmnI	GCTCC	3 cut(s)	387, 437, 770
LpnPI	CCDG	9 cut(s)	48, 195, 216, 322, 345, 567, 581, 804, 832
Lsp1109I	GCAGC	5 cut(s)	218, 545, 590, 781, 929
LweI	GCATC	3 cut(s)	12, 222, 874
MaeI	CTAG	4 cut(s)	53, 368, 654, 839
MaeIII	GTNAC	3 cut(s)	121, 250, 709
MalI	GATC	3 cut(s)	96, 410, 832
MboI	GATC	3 cut(s)	94, 408, 830
MboII	GAAGA	5 cut(s)	223, 266, 521, 667, 935
MflI	RGATCY	2 cut(s)	408, 830
MhlI	GDGCHC	2 cut(s)	241, 421
MluCI	AATT	3 cut(s)	7, 109, 243
MlyI	GAGTC	2 cut(s)	75, 276
MmeI	TCCRAC	1 cut(s)	738
MnlI	CCTC	4 cut(s)	304, 389, 519, 599
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	4 cut(s)	323, 489, 728, 734
MspA1I	CMGCKG	2 cut(s)	209, 920
MspCI	CTTAAG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	314
MwoI	GCNNNNNNNGC	4 cut(s)	41, 189, 219, 396
NcoI	CCATGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	218
NdeII	GATC	3 cut(s)	94, 408, 830
NlaIII	CATG	7 cut(s)	40, 328, 494, 518, 606, 727, 733
NlaIV	GGNNCC	3 cut(s)	330, 565, 682
NspI	RCATGY	1 cut(s)	733
PciI	ACATGT	1 cut(s)	729
PctI	GAATGC	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	341
PkrI	GCNGC	5 cut(s)	208, 535, 580, 796, 919
PleI	GAGTC	2 cut(s)	74, 276
PpsI	GAGTC	2 cut(s)	74, 276
PscI	ACATGT	1 cut(s)	729
PspEI	GGTNACC	1 cut(s)	709
PspN4I	GGNNCC	3 cut(s)	330, 565, 682
PstI	CTGCAG	1 cut(s)	208
PsuI	RGATCY	2 cut(s)	408, 830
PvuII	CAGCTG	2 cut(s)	209, 920
RsaI	GTAC	2 cut(s)	105, 650
RsaNI	GTAC	2 cut(s)	104, 649
RseI	CAYNNNNRTG	4 cut(s)	323, 489, 728, 734
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	5 cut(s)	207, 534, 579, 795, 918
Sau3AI	GATC	3 cut(s)	94, 408, 830
ScaI	AGTACT	1 cut(s)	650
SchI	GAGTC	2 cut(s)	75, 276
SduI	GDGCHC	2 cut(s)	241, 421
SfaNI	GCATC	3 cut(s)	12, 222, 874
SfcI	CTRYAG	2 cut(s)	204, 778
SmiMI	CAYNNNNRTG	4 cut(s)	323, 489, 728, 734
SmlI	CTYRAG	2 cut(s)	80, 700
SmoI	CTYRAG	2 cut(s)	80, 700
Sse9I	AATT	3 cut(s)	7, 109, 243
SsiI	CCGC	1 cut(s)	932
SspMI	CTAG	4 cut(s)	53, 368, 654, 839
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	4 cut(s)	31, 779, 867, 898
TasI	AATT	3 cut(s)	7, 109, 243
TatI	WGTACW	2 cut(s)	103, 648
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	241, 826
TseI	GCWGC	5 cut(s)	206, 533, 578, 794, 917
TspDTI	ATGAA	4 cut(s)	307, 591, 740, 917
TspRI	CASTG	2 cut(s)	241, 826
Vha464I	CTTAAG	1 cut(s)	80
XbaI	TCTAGA	1 cut(s)	367
XceI	RCATGY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	703
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	4 cut(s)	53, 368, 654, 839
ZrmI	AGTACT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.