Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000665

Physical Location & Seq

Genomic Coordinates Forward (+)

14708025 .. 14710532

Gene Structure 2508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGTTGCCATTAACCTAGCTTTTGCTGGAGTCAATGTGCTTCTTAAGTTGACATTGGATAAAGGAGTACACAATTTGGTGGTTGTTACTTATCGGCAGTTGATTTCTTGTGTCTTATTGACACCTATTGCCTTCTTTTGGGAAAGCAGAAAAGGCAGACCCGAACTTACAGCTCACATCATATGCCACCTTTTCATCAGTGCTCTAATTGGGATAACATTCACACAATACTTGTTTCTTCTTGGACTCCAATACACCTCAGCTACCTATTCCTGTGCATTCATCAACATGGTTCCTGTGAATACTTTCCTATTAGCACTACCATTTGGTCTAGAGAAAGTGAACATTAGGAGCAAGGGAGGCAGAGCAAAGATCTTGGGTGCTCTAATATGTATTGGCGGAGCTTTGTCATTGACCTTATACAAAGGAATGCCACTAACCAACCAACGACATTCCCATGCCACAGCTGATCAAAATGAAGACCATGACTATATGAGGAGATTAGTAAGGAATAAAGAGAAGTGGGCAGTTGGTTCACTGCTTTTAGCAGCAGGTTGCCTATTGTGGGCTTCATGGTTTCTCATTCAAGCCAAGATTGGCAAGAGCTACCCATTTCAGTACTCTAGCACAGCTATCTTGTCCTTCTTCGGTGCCATTCAATCAGCCATCTTGAGCTCGGTTACCGAGAGAAACATGAACATGTCAATGTGGGTTTTGAAGGGGAAGTTGGAGATATTAAGTGTCCTATATGCTGGAGCAATTGGATCAGGGTTGTGCTATGTAGGGATGTCATGGTGTGTGAAACAAAAGGGTCCATTGTTTACAGCAGCATTTACCCCCTTAACCCAGATTTTTGTGGCTATGTTTGACTTCTCAACCTTGAAAGAACAAATCTATCTTGGAAGTGTGGTGGGATCTGTCCTAGTCATAGTGGGAATGTATGTTCTACTGTGGGGGAAAAGCAATGATGCAAAGGAAACTGTGATGAAGCAGACACAAGCAGCTGAAGCAGGTGCAGATGTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

342

Amino Acids

37.53

Weight (kDa)

9.38

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	4 - 135	8.6e-11	EamA-like transporter family
EamA	PF00892	178 - 317	4.1e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30340 AT3G30340 AT4G01440 AT4G01440 AT4G01440 AT4G01440 AT4G01440
fragaria_vesca	FvH4_5g10300 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160 FvH4_7g18160
malus_domestica	MD00G1118800.v1.1 MD01G1095400.v1.1 MD01G1095700.v1.1 MD01G1097400.v1.1 MD06G1125400.v1.1 MD07G1164500.v1.1
prunus_persica	Prupe.2G203500_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1 Prupe.5G135800_v2.0.a1
pyrus_communis	pycom06g11570 pycom07g15960 pycom14g11730
rosa_chinensis	RchiOBHm_Chr1g0361761 RchiOBHm_Chr1g0361771 RchiOBHm_Chr7g0187931
rosa_laevigata	RLG00000004746 RLG00000027703 RLG00000027704
rosa_multiflora	Rmu_co8477061.1_g000001 Rmu_sc0015523.1_g000006 Rmu_sc0030043.1_g000001 Rmu_ssc0000124.1_g000022
rosa_roxburghii	Rroxscaffold_3G00266930 Rroxscaffold_4G00294710
rosa_rugosa	Rorug01G0291400 Rorug06G0485400 Rorug06G0485500
rosa_samantha	Rh1AG301800 Rh1AG301900 Rh1BG264600 Rh1BG264700 Rh1CG283100 Rh1CG283200 Rh1DG294600 Rh1DG294700 Rh7AG090600 Rh7BG092200 Rh7CG091300 Rh7DG093000
rosa_wichuraiana	Rw1G026740 Rw1G026750 Rw7G007820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1001
Acc36I	ACCTGC	2 cut(s)	542, 1001
AccB1I	GGYRCC	1 cut(s)	650
AciI	CCGC	1 cut(s)	399
AclWI	GGATC	2 cut(s)	772, 922
AcuI	CTGAAG	1 cut(s)	1026
AfaI	GTAC	2 cut(s)	69, 620
AfiI	CCNNNNNNNGG	2 cut(s)	138, 565
AflII	CTTAAG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	4 cut(s)	587, 659, 718, 883
AjuI	GAANNNNNNNTTGG	2 cut(s)	710, 742
AloI	GAACNNNNNNTCC	2 cut(s)	927, 959
AluBI	AGCT	9 cut(s)	20, 173, 263, 404, 467, 606, 632, 675, 1004
AluI	AGCT	9 cut(s)	20, 173, 263, 404, 467, 606, 632, 675, 1004
Alw21I	GWGCWC	3 cut(s)	205, 385, 677
AlwI	GGATC	2 cut(s)	772, 922
ApeKI	GCWGC	3 cut(s)	548, 827, 1001
Asp700I	GAANNNNTTC	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	812
AvaII	GGWCC	1 cut(s)	812
BanI	GGYRCC	1 cut(s)	650
BanII	GRGCYC	1 cut(s)	677
BbsI	GAAGAC	1 cut(s)	486
Bbv12I	GWGCWC	3 cut(s)	205, 385, 677
BbvCI	CCTCAGC	1 cut(s)	259
BbvI	GCAGC	3 cut(s)	560, 839, 1013
BccI	CCATC	1 cut(s)	674
BclI	TGATCA	1 cut(s)	469
BfaI	CTAG	4 cut(s)	17, 332, 624, 923
BfrI	CTTAAG	1 cut(s)	44
BfuAI	ACCTGC	2 cut(s)	542, 1001
BglII	AGATCT	1 cut(s)	372
BisI	GCNGC	3 cut(s)	549, 828, 1002
BlsI	GCNGC	3 cut(s)	550, 829, 1003
BmcAI	AGTACT	1 cut(s)	620
Bme18I	GGWCC	1 cut(s)	812
BmgT120I	GGNCC	1 cut(s)	812
BmiI	GGNNCC	3 cut(s)	294, 652, 813
BmsI	GCATC	1 cut(s)	958
BpiI	GAAGAC	1 cut(s)	486
BpmI	CTGGAG	2 cut(s)	48, 774
Bpu10I	CCTNAGC	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	691
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 565
Bse3DI	GCAATG	1 cut(s)	970
BseGI	GGATG	1 cut(s)	792
BseLI	CCNNNNNNNGG	2 cut(s)	138, 565
BseMI	GCAATG	1 cut(s)	970
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	511
BseXI	GCAGC	3 cut(s)	560, 839, 1013
BshNI	GGYRCC	1 cut(s)	650
BsiHKAI	GWGCWC	3 cut(s)	205, 385, 677
BslFI	GGGAC	1 cut(s)	1007
BslI	CCNNNNNNNGG	2 cut(s)	138, 565
BsmFI	GGGAC	1 cut(s)	1007
BsmI	GAATGC	2 cut(s)	278, 435
Bsp1286I	GDGCHC	3 cut(s)	205, 385, 677
Bsp143I	GATC	4 cut(s)	372, 469, 764, 914
BspACI	CCGC	1 cut(s)	399
BspCNI	CTCAG	1 cut(s)	272
BspLI	GGNNCC	3 cut(s)	294, 652, 813
BspMI	ACCTGC	2 cut(s)	542, 1001
BspPI	GGATC	2 cut(s)	772, 922
BspT107I	GGYRCC	1 cut(s)	650
BspTI	CTTAAG	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	970
BssMI	GATC	4 cut(s)	372, 469, 764, 914
Bst4CI	ACNGT	2 cut(s)	951, 982
BstAFI	CTTAAG	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	259
BstEII	GGTNACC	1 cut(s)	679
BstF5I	GGATG	1 cut(s)	792
BstKTI	GATC	4 cut(s)	375, 472, 767, 917
BstMBI	GATC	4 cut(s)	372, 469, 764, 914
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 360, 1007
BstNSI	RCATGY	1 cut(s)	703
BstPI	GGTNACC	1 cut(s)	679
BstV1I	GCAGC	3 cut(s)	560, 839, 1013
BstV2I	GAAGAC	1 cut(s)	486
BstX2I	RGATCY	2 cut(s)	372, 914
BstYI	RGATCY	2 cut(s)	372, 914
BtsCI	GGATG	1 cut(s)	792
BtsI	GCAGTG	1 cut(s)	536
BtsIMutI	CAGTG	2 cut(s)	205, 536
BveI	ACCTGC	2 cut(s)	542, 1001
Cfr13I	GGNCC	1 cut(s)	812
Csp6I	GTAC	2 cut(s)	68, 619
CviAII	CATG	7 cut(s)	289, 458, 485, 573, 694, 700, 792
CviQI	GTAC	2 cut(s)	68, 619
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	4 cut(s)	374, 471, 766, 916
DpnII	GATC	4 cut(s)	372, 469, 764, 914
EciI	GGCGGA	1 cut(s)	414
Ecl136II	GAGCTC	1 cut(s)	675
Eco24I	GRGCYC	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	812
Eco53kI	GAGCTC	1 cut(s)	675
Eco57I	CTGAAG	1 cut(s)	1026
Eco91I	GGTNACC	1 cut(s)	679
EcoICRI	GAGCTC	1 cut(s)	675
EcoO65I	GGTNACC	1 cut(s)	679
EcoT38I	GRGCYC	1 cut(s)	677
FaeI	CATG	7 cut(s)	292, 461, 488, 576, 697, 703, 795
FaqI	GGGAC	1 cut(s)	1007
FatI	CATG	7 cut(s)	288, 457, 484, 572, 693, 699, 791
FauNDI	CATATG	1 cut(s)	182
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	3 cut(s)	549, 828, 1002
FokI	GGATG	1 cut(s)	799
FriOI	GRGCYC	1 cut(s)	677
Fsp4HI	GCNGC	3 cut(s)	549, 828, 1002
FspBI	CTAG	4 cut(s)	17, 332, 624, 923
GluI	GCNGC	3 cut(s)	549, 828, 1002
GsuI	CTGGAG	2 cut(s)	48, 774
Hin1II	CATG	7 cut(s)	292, 461, 488, 576, 697, 703, 795
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	2 cut(s)	30, 246
Hpy166II	GTNNAC	5 cut(s)	51, 70, 343, 536, 822
Hpy188III	TCNNGA	2 cut(s)	332, 670
Hpy8I	GTNNAC	5 cut(s)	51, 70, 343, 536, 822
HpyAV	CCTTC	3 cut(s)	142, 652, 712
HpyCH4III	ACNGT	2 cut(s)	951, 982
HpyCH4V	TGCA	3 cut(s)	278, 971, 1016
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 360, 1007
HpyF3I	CTNAG	1 cut(s)	259
Hsp92II	CATG	7 cut(s)	292, 461, 488, 576, 697, 703, 795
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	372, 469, 764, 914
LmnI	GCTCC	3 cut(s)	351, 401, 755
LpnPI	CCDG	8 cut(s)	12, 286, 309, 537, 738, 753, 860, 996
Lsp1109I	GCAGC	3 cut(s)	560, 839, 1013
LweI	GCATC	1 cut(s)	958
MaeI	CTAG	4 cut(s)	17, 332, 624, 923
MaeIII	GTNAC	2 cut(s)	85, 679
MalI	GATC	4 cut(s)	374, 471, 766, 916
MboI	GATC	4 cut(s)	372, 469, 764, 914
MboII	GAAGA	3 cut(s)	230, 491, 637
MfeI	CAATTG	1 cut(s)	759
MflI	RGATCY	2 cut(s)	372, 914
MhlI	GDGCHC	3 cut(s)	205, 385, 677
MluCI	AATT	3 cut(s)	73, 207, 759
MlyI	GAGTC	2 cut(s)	39, 240
MmeI	TCCRAC	1 cut(s)	708
MnlI	CCTC	3 cut(s)	268, 353, 489
MroXI	GAANNNNTTC	1 cut(s)	305
MseI	TTAA	4 cut(s)	12, 45, 737, 842
MslI	CAYNNNNRTG	4 cut(s)	287, 456, 698, 704
MspA1I	CMGCKG	2 cut(s)	467, 1004
MspCI	CTTAAG	1 cut(s)	44
MunI	CAATTG	1 cut(s)	759
Mva1269I	GAATGC	2 cut(s)	278, 435
MwoI	GCNNNNNNNGC	3 cut(s)	153, 360, 1007
NdeI	CATATG	1 cut(s)	182
NdeII	GATC	4 cut(s)	372, 469, 764, 914
NlaIII	CATG	7 cut(s)	292, 461, 488, 576, 697, 703, 795
NlaIV	GGNNCC	3 cut(s)	294, 652, 813
NspI	RCATGY	1 cut(s)	703
PaqCI	CACCTGC	1 cut(s)	1001
PciI	ACATGT	1 cut(s)	699
PctI	GAATGC	2 cut(s)	278, 435
PdmI	GAANNNNTTC	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	550, 829, 1003
PleI	GAGTC	2 cut(s)	38, 240
PpsI	GAGTC	2 cut(s)	38, 240
PscI	ACATGT	1 cut(s)	699
Psp124BI	GAGCTC	1 cut(s)	677
PspEI	GGTNACC	1 cut(s)	679
PspN4I	GGNNCC	3 cut(s)	294, 652, 813
PspPI	GGNCC	1 cut(s)	812
PsuI	RGATCY	2 cut(s)	372, 914
PvuII	CAGCTG	2 cut(s)	467, 1004
RsaI	GTAC	2 cut(s)	69, 620
RsaNI	GTAC	2 cut(s)	68, 619
RseI	CAYNNNNRTG	4 cut(s)	287, 456, 698, 704
SacI	GAGCTC	1 cut(s)	677
SaqAI	TTAA	4 cut(s)	12, 45, 737, 842
SatI	GCNGC	3 cut(s)	549, 828, 1002
Sau3AI	GATC	4 cut(s)	372, 469, 764, 914
Sau96I	GGNCC	1 cut(s)	812
ScaI	AGTACT	1 cut(s)	620
SchI	GAGTC	2 cut(s)	39, 240
SduI	GDGCHC	3 cut(s)	205, 385, 677
SfaNI	GCATC	1 cut(s)	958
SinI	GGWCC	1 cut(s)	812
SmiMI	CAYNNNNRTG	4 cut(s)	287, 456, 698, 704
SmlI	CTYRAG	2 cut(s)	44, 670
SmoI	CTYRAG	2 cut(s)	44, 670
Sse9I	AATT	3 cut(s)	73, 207, 759
SsiI	CCGC	1 cut(s)	399
SspMI	CTAG	4 cut(s)	17, 332, 624, 923
SstI	GAGCTC	1 cut(s)	677
TaaI	ACNGT	2 cut(s)	951, 982
TasI	AATT	3 cut(s)	73, 207, 759
TatI	WGTACW	2 cut(s)	67, 618
Tru1I	TTAA	4 cut(s)	12, 45, 737, 842
Tru9I	TTAA	4 cut(s)	12, 45, 737, 842
TscAI	CASTG	2 cut(s)	205, 543
TseI	GCWGC	3 cut(s)	548, 827, 1001
TspDTI	ATGAA	6 cut(s)	184, 271, 492, 561, 710, 1001
TspRI	CASTG	2 cut(s)	205, 543
Vha464I	CTTAAG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	812
XbaI	TCTAGA	1 cut(s)	331
XceI	RCATGY	1 cut(s)	703
XmnI	GAANNNNTTC	1 cut(s)	305
XspI	CTAG	4 cut(s)	17, 332, 624, 923
ZrmI	AGTACT	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.