Rorug06G0485900

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006408
Physical Location & Seq
Forward (+)
60516588 .. 60518883
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0485900.1

Sequence Viewer

Length: 588 bp
ATGGCATTTGCAGGAACAACCCAGAAATGCATGGCTTGTGACAAAACTGTGTATCTGGTTGATAAGCTCACAGCTGATAACAGAATCTATCACAAAGCCTGCTTTAGATGCCACCACTGCAAAGGAACCCTCAAGCTCAGCAACTACAATTCATTTGAGGGAGTACTTTACTGCAGGCCACACTTTGATCAACTCTTCAAAAGAACTGGCAGTCTTGACAAAAGCTTTGAAGGCACACCAAAAATTGTAAAACCAGAGAGACCTGTTGATAATGAGAAAGCTGCAGTGGCTAAAGCTTCAAGCATGTTTGGTGGAACCAGAGATAAATGCTTTGGCTGCAAGAAAACTGTTTATCCAACAGAAAAGGTTTCGGTGAATGGAACTCCCTACCACAAGATGTGCTTCAAATGTACACATGGAGGGTGTACAATCAGCCCATCGAACTACATTGCACATGAGGGCCGACTCTACTGCAAGCACCACCACACCCAACTCATCAAGGAGAAAGGAAACTTGAGCCAACTCGAGGGTGGTGGTGACCATGATGAGAAAGTAGTCGGTGCCACAGAAATTGCTGCTGAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902446 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2000030 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2

Protein Analysis

195

Amino Acids

21.69

Weight (kDa)

8.94

Isoelectric Point (pI)

28.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIM PF00412 10 - 65 5.5e-10 LIM domain
LIM PF00412 110 - 164 2.3e-11 LIM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 560
AfaI GTAC 3 cut(s) 165, 412, 427
AfiI CCNNNNNNNGG 1 cut(s) 526
AgsI TTSAA 4 cut(s) 199, 230, 300, 406
AluBI AGCT 6 cut(s) 67, 74, 136, 225, 281, 296
AluI AGCT 6 cut(s) 67, 74, 136, 225, 281, 296
Alw26I GTCTC 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 524
AoxI GGCC 2 cut(s) 176, 460
ApeKI GCWGC 3 cut(s) 281, 336, 575
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AspS9I GGNCC 1 cut(s) 460
AsuHPI GGTGA 2 cut(s) 385, 548
AvaI CYCGRG 1 cut(s) 524
BanI GGYRCC 1 cut(s) 560
BbvI GCAGC 3 cut(s) 268, 323, 562
BccI CCATC 1 cut(s) 445
BcgI CGANNNNNNTGC 2 cut(s) 453, 487
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 253
BfmI CTRYAG 2 cut(s) 172, 282
BisI GCNGC 3 cut(s) 282, 337, 576
BlpI GCTNAGC 1 cut(s) 137
BlsI GCNGC 3 cut(s) 283, 338, 577
BmcAI AGTACT 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 460
BmiI GGNNCC 3 cut(s) 127, 316, 562
BmsI GCATC 1 cut(s) 98
Bpu1102I GCTNAGC 1 cut(s) 137
BpuEI CTTGAG 2 cut(s) 116, 535
BsaI GGTCTC 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 526
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 447
BseLI CCNNNNNNNGG 1 cut(s) 526
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 3 cut(s) 268, 323, 562
BshFI GGCC 2 cut(s) 178, 462
BshNI GGYRCC 1 cut(s) 560
BsiHKCI CYCGRG 1 cut(s) 524
BslI CCNNNNNNNGG 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 253
BsnI GGCC 2 cut(s) 178, 462
Bso31I GGTCTC 1 cut(s) 253
BsoBI CYCGRG 1 cut(s) 524
Bsp1407I TGTACA 2 cut(s) 410, 425
Bsp143I GATC 1 cut(s) 187
Bsp1720I GCTNAGC 1 cut(s) 137
BspANI GGCC 2 cut(s) 178, 462
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 3 cut(s) 127, 316, 562
BspMAI CTGCAG 2 cut(s) 176, 286
BspT107I GGYRCC 1 cut(s) 560
BspTNI GGTCTC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 447
BsrGI TGTACA 2 cut(s) 410, 425
BsrI ACTGG 1 cut(s) 211
BssMI GATC 1 cut(s) 187
Bst4CI ACNGT 2 cut(s) 49, 349
Bst6I CTCTTC 1 cut(s) 200
BstAUI TGTACA 2 cut(s) 410, 425
BstC8I GCNNGC 3 cut(s) 100, 176, 476
BstDEI CTNAG 1 cut(s) 137
BstEII GGTNACC 1 cut(s) 536
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 5 cut(s) 108, 117, 231, 287, 336
BstNSI RCATGY 1 cut(s) 307
BstPI GGTNACC 1 cut(s) 536
BstSFI CTRYAG 2 cut(s) 172, 282
BstV1I GCAGC 3 cut(s) 268, 323, 562
BsuRI GGCC 2 cut(s) 178, 462
BtsI GCAGTG 2 cut(s) 115, 291
BtsIMutI CAGTG 2 cut(s) 115, 291
Cac8I GCNNGC 3 cut(s) 100, 176, 476
Cfr13I GGNCC 1 cut(s) 460
Csp6I GTAC 3 cut(s) 164, 411, 426
CspCI CAANNNNNGTGG 2 cut(s) 553, 588
CviAII CATG 5 cut(s) 31, 304, 416, 455, 542
CviQI GTAC 3 cut(s) 164, 411, 426
DdeI CTNAG 1 cut(s) 137
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 524
Eco91I GGTNACC 1 cut(s) 536
EcoO65I GGTNACC 1 cut(s) 536
EcoT22I ATGCAT 1 cut(s) 32
FaeI CATG 5 cut(s) 34, 307, 419, 458, 545
FaiI YATR 6 cut(s) 32, 305, 417, 456, 543, 586
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FatI CATG 5 cut(s) 30, 303, 415, 454, 541
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 3 cut(s) 282, 337, 576
Fsp4HI GCNGC 3 cut(s) 282, 337, 576
GluI GCNGC 3 cut(s) 282, 337, 576
HaeIII GGCC 2 cut(s) 178, 462
Hin1II CATG 5 cut(s) 34, 307, 419, 458, 545
HindIII AAGCTT 2 cut(s) 223, 294
HinfI GANTC 2 cut(s) 84, 465
HphI GGTGA 2 cut(s) 385, 548
Hpy166II GTNNAC 2 cut(s) 413, 426
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 2 cut(s) 413, 426
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 2 cut(s) 49, 349
HpyCH4V TGCA 8 cut(s) 11, 30, 120, 174, 284, 339, 452, 474
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 117, 231, 287, 336
HpyF3I CTNAG 1 cut(s) 137
Hsp92II CATG 5 cut(s) 34, 307, 419, 458, 545
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 8 cut(s) 35, 41, 112, 160, 192, 267, 276, 331
Lsp1109I GCAGC 3 cut(s) 268, 323, 562
LweI GCATC 1 cut(s) 98
MaeIII GTNAC 2 cut(s) 38, 536
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 1 cut(s) 187
MluCI AATT 3 cut(s) 148, 243, 570
MlyI GAGTC 1 cut(s) 459
MmeI TCCRAC 1 cut(s) 380
MnlI CCTC 5 cut(s) 140, 151, 413, 451, 520
Mph1103I ATGCAT 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 74
MwoI GCNNNNNNNGC 5 cut(s) 108, 117, 231, 287, 336
NdeII GATC 1 cut(s) 187
NlaIII CATG 5 cut(s) 34, 307, 419, 458, 545
NlaIV GGNNCC 3 cut(s) 127, 316, 562
NmuCI GTSAC 2 cut(s) 38, 536
NsiI ATGCAT 1 cut(s) 32
NspI RCATGY 1 cut(s) 307
PaeR7I CTCGAG 1 cut(s) 524
PfeI GAWTC 1 cut(s) 84
PkrI GCNGC 3 cut(s) 283, 338, 577
PleI GAGTC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 459
PspEI GGTNACC 1 cut(s) 536
PspN4I GGNNCC 3 cut(s) 127, 316, 562
PspPI GGNCC 1 cut(s) 460
PspXI VCTCGAGB 1 cut(s) 524
PstI CTGCAG 2 cut(s) 176, 286
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 3 cut(s) 165, 412, 427
RsaNI GTAC 3 cut(s) 164, 411, 426
SatI GCNGC 3 cut(s) 282, 337, 576
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 1 cut(s) 460
ScaI AGTACT 1 cut(s) 165
SchI GAGTC 1 cut(s) 459
SetI ASST 8 cut(s) 69, 76, 138, 227, 265, 283, 298, 369
SfaNI GCATC 1 cut(s) 98
SfcI CTRYAG 2 cut(s) 172, 282
Sfr274I CTCGAG 1 cut(s) 524
SlaI CTCGAG 1 cut(s) 524
SmlI CTYRAG 3 cut(s) 131, 514, 524
SmoI CTYRAG 3 cut(s) 131, 514, 524
Sse9I AATT 3 cut(s) 148, 243, 570
TaaI ACNGT 2 cut(s) 49, 349
TaqI TCGA 2 cut(s) 440, 525
TasI AATT 3 cut(s) 148, 243, 570
TatI WGTACW 3 cut(s) 163, 410, 425
TfiI GAWTC 1 cut(s) 84
TscAI CASTG 2 cut(s) 122, 291
TseFI GTSAC 2 cut(s) 38, 536
TseI GCWGC 3 cut(s) 281, 336, 575
Tsp45I GTSAC 2 cut(s) 38, 536
TspDTI ATGAA 1 cut(s) 141
TspRI CASTG 2 cut(s) 122, 291
XceI RCATGY 1 cut(s) 307
XcmI CCANNNNNNNNNTGG 1 cut(s) 527
XhoI CTCGAG 1 cut(s) 524
ZrmI AGTACT 1 cut(s) 165
Zsp2I ATGCAT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.