Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009687

Physical Location & Seq

Genomic Coordinates Forward (+)

28489648 .. 28492845

Gene Structure 3198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1141100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3198 bp

ATGGAATGTAATAAAGACGAGGCCCTCAAGGCGAAAGAGGTCGCAGAGTTGAAGGCTTCAGAGCGTGACTTCTCTGGGGCTCTAAGATTTGCTTTAAAGGCGCGGAGCTTGTATCCCGAGCTTGATGGTCTTCCTCAGCTTTTGACAACTCTTTATGTTCACACCTCCGCTCAGAAGGGAACAACTGGTGAGACCGATCGCTATAAGGTCCTTGCTGTGGAACCGTTGGCTGACAAGGGCACAATCCGAAAGCAATACAAGAGACTGGCTCTCTCTCTTCATCCAGATAAAAATAAATCTGTAGGCGCAGACAGTGCTTTCCAAATTGTTAAGGAAGCCTGGAATTTGTTGTCTGATGAAGACGAGAGATTTCTTTATGACCAGAGGCGGAGCTTAAGCTACATGGTTGAAAGAGTTTCGGATTGCAAATCATCCACAGCGATGAGTCAGAATGGTTTTCATACCTTCTCCAACTATAATCAGTCAAACGGAAGGGATCAGTGGAGTGCTAATTATACTGACCCTTTTACTACAATGAGTTGGAATGCTTTCCATACCTTCTCCAACTATAATCAGTCAAACAGAAAGGATCAGTGGAGTTCTAATTATACCGATCCTGTTACAGCAATGAGGCGGAATGGCTTCCACACCTTCTCCAACTATAATCAGTCAAACGGAAGGGATCAGTGGAGTGCTAGTTATACCAATCCTGTTACTATGAGTCAGAATGGTTACCATACCTCCTCCAACTATAATCATTCAAACGGAAGGGATCAGAGGAGTGCTACTCGTAATGAGCCTACTGGAGTAACGAGTCAGGATGGTTTCTATACCTCCACCGACTATAATCATTCAAACGGAATGGATCAGAGGAGTGCTACTCCTGCCGACCCTACACCAATGTGTCAGAATGGCTCCCATACCTCCTCCAACTATAAGCATTCAAACGGAAGGGATCAGATGAGTGCTACTCATTCTGTGCCAACAGGAGTAACAAGTCAGGATGGTTTCTATACCTCCCACAATAATCATTCAAACGGAAGGGATCAGAGGAGTGCTACTTCTGTCGAGCATACTAGACCATTGTGCCAGAATGATTTCCATACCCCCTCCAACGATAGTCGTTCAAACAGAAGGGATCAGAAGGGTGCTACTTCTGTCGAGCCTACTACACCAGTGTGCCAGAATGATTTCCATACCTCCTCCAACGATAATCATTCAAACGGAAGGGATCAGAGTAGTGCTAGTGCTAGTCATACCAAGCCTACTAGACGCAATACCAAGCCTAGTAGACCTCCTTCTCTACCGAAACAGACATTTTGGACAGTGTGCAGTAGTTGCAAGATGCATTTTGAGTATCTTAAGACTTATCTGAACCACCACCTTCTGTGTCACAACTGCAATCAGGGCTTTTTAGCTCTTGAGACACCAGCCCCAAAAGTACCCAATTTGACATCCTCTCCATGGATTTCCTACTTTCAGCGAAAGGGTTCTGGGCAGCGCAACAGGACCAAGAAGACCTGTGCTCCAGGAAGTTCACAAACTGCTACCGTAAATGTGGGATTAGCTGGAAATTCTGGAGTTGACACATCAACACAAGATTTGGCAGGCAAAGGGCAAGTACCAGGTTCCTGTGCTGGTCAAACTGCAAGTGACGTTCGCCAAGAATTTGGGGAATCAAAGAGAAGGCATGAAGAGGCGTTTCCAAATAAGAAGGTGCATACGTGCAATCTTGATGCTTTTAAGAAAACAGATGCTGCCTTAGCTTCTGAGTCTCCTACCTCTGCTTCCAGTTCTGTACCCAACAAAGAGATGCCTACGAAGAAAAGGCATCTGAGCGGGCAAGAGATAGGAATGGCTAATGGAGGAGTTGCTATGGACAGTGTATTCGGACCTAACAATGGTAGTGTTGGTACAGGAAGTTTTGATGTAGCTGGAACGCTTGAACTTAACTTCACAAGGAATCTGCCCATAATACAAGTGAGGAGTGCGTTGCAAGGAATGATTCAGAAAGAAATTTCCCAGAAGCTTAAAGTGTGGAAGGAGGCTGCTGCGTCGAAGACTTCATTTACACCAAAAGCTGCTGCAGATAGTAACCAGGTGAAAGAGAAGCAAAAGGAAGAAGCTTGTCAGCGTGGTGTAAAAACTAGTGTTACAGGATGTACGGCATTTGTGAATCCCAAGAAGTCTTCCCTTGCCAATTCTCATGTGGACACTGATATGGAGCAACAAGATACAGTGAAAATGACTGTTCCAGACCCTGATTTTCATGATTTTGACAAGGATCGTACAGAAAAGTCATTTGGTAGCAACCAGGTTTGGGCCATCTACGATGAAGATGATGCCATGCCCCGTTATTATGCTATGGTTCACAGTGTGATATCTTTGAAACCGTTCAAACTTAGCATGAACTGGCTCAACGCCAAAACTAACAGCGAGATTGCTCCACTAGATTGGATTGCTTGTGGTTTTTCTAAAACTAGCGGGGAACTTCGGAAAGGGAAGCACGTAGTCTATGACCATCTTCCTTCTTTCTCACACAAGGTGGCTAGGTGGACAAAAGGCAAAAGAGGAGCTATCTGCATATATCCATCAAAAGGAGAAGTCTGGGGACTGTTCAGGAACTGGTCCCCCGTTTGGAACGAACATACCCCAGATGACGTTATTCAGAAATATGATATGGTGCAAGTGCTTGAAGATTACAACGAGGAGCAAGGCGTGAAAATTGTCCCACTGGTTAAAGTAGCAGGTTTCAAAACAGTGTTCTGCCAACATTGGGACCAAAGTAAAATCATGAAAATTCCAAGGGAAGAACTCTTTCGTTTCTCCCACCAGGTCCCTTCTATAAGTCTCACCGGAAATGAAGGTCACAATGTTCCGAAAGGATGCTTGGAGCTTGATCCTGCGGCTACTCCCTTGGAACTGCTTCAGGTGGAATCAGAAGAATATGAGGATGACATGGAGGTGACAGGTGAAGGATGTAATGGTGAAGATCCGGTTGGATTGTCAAAAACCACCAAGGAAGAGGCTCAGGTGGATAATGGCAAAGTAACTAAAGAAACGGGCTTGATAGAAGAGGCTGAGAAAAAAGACTTGGCAGACATGATGAAGAGGGAGAAGGAACGCCAAGGGCCGACATTGCTAGTGTATAGTCGGAAATGTTTCAGGGAAGACAAAAAGAAGGGTGCCGACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

1066

Amino Acids

118.75

Weight (kDa)

8.17

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	67 - 127	1.2e-17	DnaJ domain
Zn_ribbon_20	PF23551	440 - 473	6.1e-14	Zinc beta-ribbon domain
DUF3444	PF11926	748 - 955	8.7e-72	Domain of unknown function (DUF3444)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08400
malus_domestica	MD06G1141100.v1.1 MD14G1156300.v1.1
prunus_persica	Prupe.5G150300_v2.0.a1
pyrus_communis	pycom14g12990
rosa_chinensis	RchiOBHm_Chr7g0190041
rosa_laevigata	RLG00000003228 RLG00000004569
rosa_multiflora	Rmu_sc0000841.1_g000012 Rmu_sc0004886.1_g000005
rosa_roxburghii	Rroxscaffold_3G00250580 Rroxscaffold_3G00264930
rosa_rugosa	Rorug07G0103200.1
rosa_samantha	Rh7AG107400 Rh7AG237500 Rh7BG109700 Rh7BG233200 Rh7CG112000 Rh7CG253300 Rh7DG110400 Rh7DG243500
rosa_wichuraiana	Rw7G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2738
AccB1I	GGYRCC	1 cut(s)	3185
AccBSI	CCGCTC	2 cut(s)	170, 1839
AccI	GTMKAC	1 cut(s)	1291
AccII	CGCG	1 cut(s)	103
AciI	CCGC	7 cut(s)	103, 168, 388, 634, 1839, 2484, 2906
AcsI	RAATTY	5 cut(s)	343, 1573, 1667, 2016, 2799
AcuI	CTGAAG	2 cut(s)	42, 2912
AdeI	CACNNNGTG	2 cut(s)	2377, 2545
AfaI	GTAC	6 cut(s)	1443, 1623, 1800, 1915, 2164, 2290
AfiI	CCNNNNNNNGG	7 cut(s)	217, 1464, 1901, 2320, 2597, 2637, 2776
AflII	CTTAAG	2 cut(s)	394, 1361
AhlI	ACTAGT	1 cut(s)	2147
AjnI	CCWGG	6 cut(s)	338, 1528, 1624, 2097, 2313, 2832
AjuI	GAANNNNNNNTTGG	8 cut(s)	2286, 2318, 2873, 2905, 2982, 3014, 3077, 3109
AleI	CACNNNNGTG	2 cut(s)	901, 1177
Alw21I	GWGCWC	1 cut(s)	1528
Alw26I	GTCTC	5 cut(s)	185, 256, 1418, 1779, 2855
AlwNI	CAGNNNCTG	3 cut(s)	1757, 2261, 2625
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	3 cut(s)	21, 2322, 3131
ApeKI	GCWGC	6 cut(s)	1498, 1757, 2048, 2051, 2081, 2084
ApoI	RAATTY	5 cut(s)	343, 1573, 1667, 2016, 2799
ArsI	GACNNNNNNTTYG	2 cut(s)	1871, 1903
Asp700I	GAANNNNTTC	9 cut(s)	548, 641, 1097, 1190, 1489, 2393, 2817, 2925, 3161
AspLEI	GCGC	3 cut(s)	103, 308, 1503
AspS9I	GGNCC	9 cut(s)	22, 208, 1509, 1892, 2322, 2628, 2779, 2836, 3131
AsuHPI	GGTGA	6 cut(s)	200, 2113, 2845, 2977, 2984, 2999
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	6 cut(s)	208, 1509, 1892, 2628, 2779, 2836
BaeGI	GKGCMC	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	3185
BanII	GRGCYC	1 cut(s)	82
BarI	GAAGNNNNNNTAC	2 cut(s)	1282, 1314
BbsI	GAAGAC	6 cut(s)	122, 366, 1523, 2066, 2181, 3177
Bbv12I	GWGCWC	1 cut(s)	1528
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	6 cut(s)	1510, 1744, 2035, 2038, 2068, 2071
BccI	CCATC	6 cut(s)	119, 815, 998, 2333, 2529, 2599
BceAI	ACGGC	1 cut(s)	2181
BciT130I	CCWGG	6 cut(s)	340, 1530, 1626, 2099, 2315, 2834
BciVI	GTATCC	1 cut(s)	123
BcoDI	GTCTC	5 cut(s)	185, 256, 1418, 1779, 2855
BcuI	ACTAGT	1 cut(s)	2147
BfmI	CTRYAG	2 cut(s)	300, 2085
BfrI	CTTAAG	2 cut(s)	394, 1361
BfuAI	ACCTGC	1 cut(s)	2738
BfuI	GTATCC	1 cut(s)	123
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	7 cut(s)	1499, 1758, 2049, 2052, 2082, 2085, 2907
BlsI	GCNGC	7 cut(s)	1500, 1759, 2050, 2053, 2083, 2086, 2908
Bme1390I	CCNGG	6 cut(s)	340, 1530, 1626, 2099, 2315, 2834
Bme18I	GGWCC	6 cut(s)	208, 1509, 1892, 2628, 2779, 2836
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	9 cut(s)	22, 208, 1509, 1892, 2322, 2628, 2779, 2836, 3131
BmiI	GGNNCC	7 cut(s)	222, 916, 1630, 2630, 2780, 2838, 3187
BmrFI	CCNGG	6 cut(s)	340, 1530, 1626, 2099, 2315, 2834
BmsI	GCATC	7 cut(s)	1335, 1726, 1744, 1803, 1840, 2332, 2876
BpiI	GAAGAC	6 cut(s)	122, 366, 1523, 2066, 2181, 3177
BplI	GAGNNNNNCTC	8 cut(s)	253, 285, 772, 804, 865, 897, 955, 987
BpmI	CTGGAG	3 cut(s)	825, 1512, 1599
Bpu10I	CCTNAGC	3 cut(s)	135, 1762, 3030
BpuEI	CTTGAG	2 cut(s)	11, 1442
BsaAI	YACGTR	2 cut(s)	1725, 2509
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	5 cut(s)	1463, 2804, 2916, 3018, 3127
BsaWI	WCCGGW	2 cut(s)	2855, 2995
Bsc4I	CCNNNNNNNGG	7 cut(s)	217, 1464, 1901, 2320, 2597, 2637, 2776
Bse1I	ACTGG	8 cut(s)	190, 270, 808, 1175, 1791, 2417, 2630, 2739
Bse3DI	GCAATG	2 cut(s)	633, 3137
BseBI	CCWGG	6 cut(s)	340, 1530, 1626, 2099, 2315, 2834
BseDI	CCNNGG	5 cut(s)	1463, 2804, 2916, 3018, 3127
BseGI	GGATG	9 cut(s)	280, 431, 826, 1009, 1454, 2165, 2891, 2959, 2984
BseLI	CCNNNNNNNGG	7 cut(s)	217, 1464, 1901, 2320, 2597, 2637, 2776
BseMI	GCAATG	2 cut(s)	633, 3137
BseMII	CTCAG	6 cut(s)	149, 185, 1761, 1826, 3044, 3072
BseNI	ACTGG	8 cut(s)	190, 270, 808, 1175, 1791, 2417, 2630, 2739
BseSI	GKGCMC	1 cut(s)	242
BseXI	GCAGC	6 cut(s)	1510, 1744, 2035, 2038, 2068, 2071
BsgI	GTGCAG	1 cut(s)	1351
Bsh1236I	CGCG	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	3 cut(s)	23, 2324, 3133
BshNI	GGYRCC	1 cut(s)	3185
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	1528
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	2856, 2996
BslFI	GGGAC	5 cut(s)	2614, 2625, 2714, 2792, 2822
BslI	CCNNNNNNNGG	7 cut(s)	217, 1464, 1901, 2320, 2597, 2637, 2776
BsmAI	GTCTC	5 cut(s)	185, 256, 1418, 1779, 2855
BsmFI	GGGAC	5 cut(s)	2614, 2625, 2714, 2792, 2822
BsmI	GAATGC	2 cut(s)	550, 940
BsnI	GGCC	3 cut(s)	23, 2324, 3133
Bso31I	GGTCTC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	3 cut(s)	82, 242, 1528
Bsp19I	CCATGG	1 cut(s)	1463
BspACI	CCGC	7 cut(s)	103, 168, 388, 634, 1839, 2484, 2906
BspANI	GGCC	3 cut(s)	23, 2324, 3133
BspCNI	CTCAG	6 cut(s)	148, 184, 1762, 1827, 3043, 3073
BspFNI	CGCG	1 cut(s)	103
BspHI	TCATGA	2 cut(s)	2269, 2793
BspLI	GGNNCC	7 cut(s)	222, 916, 1630, 2630, 2780, 2838, 3187
BspMAI	CTGCAG	1 cut(s)	2089
BspMI	ACCTGC	1 cut(s)	2738
BspT107I	GGYRCC	1 cut(s)	3185
BspTI	CTTAAG	2 cut(s)	394, 1361
BspTNI	GGTCTC	1 cut(s)	185
BsrBI	CCGCTC	2 cut(s)	170, 1839
BsrDI	GCAATG	2 cut(s)	633, 3137
BsrI	ACTGG	8 cut(s)	190, 270, 808, 1175, 1791, 2417, 2630, 2739
BssECI	CCNNGG	5 cut(s)	1463, 2804, 2916, 3018, 3127
BssT1I	CCWWGG	5 cut(s)	1463, 2804, 2916, 3018, 3127
Bst2UI	CCWGG	6 cut(s)	340, 1530, 1626, 2099, 2315, 2834
Bst6I	CTCTTC	5 cut(s)	282, 1689, 3018, 3069, 3104
BstAFI	CTTAAG	2 cut(s)	394, 1361
BstAPI	GCANNNNNTGC	2 cut(s)	314, 1338
BstBAI	YACGTR	2 cut(s)	1725, 2509
BstC8I	GCNNGC	2 cut(s)	1609, 1841
BstDEI	CTNAG	9 cut(s)	83, 135, 171, 1762, 1770, 1835, 2402, 3030, 3081
BstDSI	CCRYGG	1 cut(s)	1463
BstEII	GGTNACC	1 cut(s)	731
BstF5I	GGATG	9 cut(s)	280, 431, 826, 1009, 1454, 2165, 2891, 2959, 2984
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	3 cut(s)	103, 308, 1503
BstMAI	GTCTC	5 cut(s)	185, 256, 1418, 1779, 2855
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	8 cut(s)	29, 98, 314, 884, 1338, 1407, 1763, 3139
BstNI	CCWGG	6 cut(s)	340, 1530, 1626, 2099, 2315, 2834
BstPI	GGTNACC	1 cut(s)	731
BstSCI	CCNGG	6 cut(s)	338, 1528, 1624, 2097, 2313, 2832
BstSFI	CTRYAG	2 cut(s)	300, 2085
BstSLI	GKGCMC	1 cut(s)	242
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	6 cut(s)	1510, 1744, 2035, 2038, 2068, 2071
BstV2I	GAAGAC	6 cut(s)	122, 366, 1523, 2066, 2181, 3177
BstX2I	RGATCY	1 cut(s)	2992
BstXI	CCANNNNNNTGG	2 cut(s)	1670, 2454
BstYI	RGATCY	1 cut(s)	2992
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	23, 2324, 3133
BtgI	CCRYGG	1 cut(s)	1463
BtgZI	GCGATG	1 cut(s)	455
BtsCI	GGATG	9 cut(s)	280, 431, 826, 1009, 1454, 2165, 2891, 2959, 2984
BveI	ACCTGC	1 cut(s)	2738
Cac8I	GCNNGC	2 cut(s)	1609, 1841
CaiI	CAGNNNCTG	3 cut(s)	1757, 2261, 2625
CciI	TCATGA	2 cut(s)	2269, 2793
CfoI	GCGC	3 cut(s)	103, 308, 1503
Cfr13I	GGNCC	9 cut(s)	22, 208, 1509, 1892, 2322, 2628, 2779, 2836, 3131
CseI	GACGC	2 cut(s)	1281, 2043
CsiI	ACCWGGT	4 cut(s)	1624, 2097, 2313, 2832
Csp6I	GTAC	6 cut(s)	1442, 1622, 1799, 1914, 2163, 2289
CviQI	GTAC	6 cut(s)	1442, 1622, 1799, 1914, 2163, 2289
DdeI	CTNAG	9 cut(s)	83, 135, 171, 1762, 1770, 1835, 2402, 3030, 3081
DraI	TTTAAA	1 cut(s)	96
DraIII	CACNNNGTG	2 cut(s)	2377, 2545
Eam1104I	CTCTTC	5 cut(s)	282, 1689, 3018, 3069, 3104
EarI	CTCTTC	5 cut(s)	282, 1689, 3018, 3069, 3104
EciI	GGCGGA	2 cut(s)	403, 649
Eco130I	CCWWGG	5 cut(s)	1463, 2804, 2916, 3018, 3127
Eco24I	GRGCYC	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	2382
Eco47I	GGWCC	6 cut(s)	208, 1509, 1892, 2628, 2779, 2836
Eco57I	CTGAAG	2 cut(s)	42, 2912
Eco88I	CYCGRG	1 cut(s)	116
Eco91I	GGTNACC	1 cut(s)	731
EcoO109I	RGGNCCY	3 cut(s)	22, 208, 2836
EcoO65I	GGTNACC	1 cut(s)	731
EcoRII	CCWGG	6 cut(s)	338, 1528, 1624, 2097, 2313, 2832
EcoRV	GATATC	1 cut(s)	2382
EcoT14I	CCWWGG	5 cut(s)	1463, 2804, 2916, 3018, 3127
EcoT22I	ATGCAT	1 cut(s)	1350
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	5 cut(s)	1463, 2804, 2916, 3018, 3127
FalI	AAGNNNNNCTT	2 cut(s)	76, 108
FaqI	GGGAC	5 cut(s)	2614, 2625, 2714, 2792, 2822
FauI	CCCGC	2 cut(s)	1832, 2477
FblI	GTMKAC	1 cut(s)	1291
Fnu4HI	GCNGC	7 cut(s)	1499, 1758, 2049, 2052, 2082, 2085, 2907
FokI	GGATG	9 cut(s)	267, 418, 833, 1016, 1441, 2172, 2898, 2966, 2991
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	7 cut(s)	1499, 1758, 2049, 2052, 2082, 2085, 2907
GlaI	GCGC	3 cut(s)	102, 307, 1502
GluI	GCNGC	7 cut(s)	1499, 1758, 2049, 2052, 2082, 2085, 2907
GsuI	CTGGAG	3 cut(s)	825, 1512, 1599
HaeIII	GGCC	3 cut(s)	23, 2324, 3133
HapII	CCGG	2 cut(s)	2856, 2996
HgaI	GACGC	2 cut(s)	1281, 2043
HhaI	GCGC	3 cut(s)	103, 308, 1503
Hin6I	GCGC	3 cut(s)	101, 306, 1501
HinP1I	GCGC	3 cut(s)	101, 306, 1501
HincII	GTYRAC	1 cut(s)	1585
HindII	GTYRAC	1 cut(s)	1585
HindIII	AAGCTT	2 cut(s)	2027, 2124
HinfI	GANTC	9 cut(s)	445, 721, 814, 1676, 1772, 1963, 2005, 2176, 2936
HpaII	CCGG	2 cut(s)	2856, 2996
HphI	GGTGA	6 cut(s)	200, 2113, 2845, 2977, 2984, 2999
Hpy166II	GTNNAC	7 cut(s)	160, 1292, 1538, 1585, 2212, 2371, 2556
Hpy8I	GTNNAC	7 cut(s)	160, 1292, 1538, 1585, 2212, 2371, 2556
Hpy99I	CGWCG	1 cut(s)	2059
HpyCH4IV	ACGT	4 cut(s)	1656, 1724, 2508, 2661
HpyF10VI	GCNNNNNNNGC	8 cut(s)	29, 98, 314, 884, 1338, 1407, 1763, 3139
HpyF3I	CTNAG	9 cut(s)	83, 135, 171, 1762, 1770, 1835, 2402, 3030, 3081
HpySE526I	ACGT	4 cut(s)	1656, 1724, 2508, 2661
HspAI	GCGC	3 cut(s)	101, 306, 1501
LmnI	GCTCC	9 cut(s)	105, 390, 920, 1531, 2224, 2449, 2573, 2710, 2893
Lsp1109I	GCAGC	6 cut(s)	1510, 1744, 2035, 2038, 2068, 2071
LweI	GCATC	7 cut(s)	1335, 1726, 1744, 1803, 1840, 2332, 2876
MabI	ACCWGGT	4 cut(s)	1624, 2097, 2313, 2832
MaeII	ACGT	4 cut(s)	1656, 1724, 2508, 2661
MbiI	CCGCTC	2 cut(s)	170, 1839
MflI	RGATCY	1 cut(s)	2992
MhlI	GDGCHC	3 cut(s)	82, 242, 1528
MlyI	GAGTC	4 cut(s)	454, 730, 823, 1781
Mph1103I	ATGCAT	1 cut(s)	1350
MroXI	GAANNNNTTC	9 cut(s)	548, 641, 1097, 1190, 1489, 2393, 2817, 2925, 3161
MseI	TTAA	8 cut(s)	95, 330, 395, 1362, 1743, 1950, 2031, 2739
MslI	CAYNNNNRTG	5 cut(s)	440, 901, 1177, 2219, 2963
MspCI	CTTAAG	2 cut(s)	394, 1361
MspI	CCGG	2 cut(s)	2856, 2996
MspR9I	CCNGG	6 cut(s)	340, 1530, 1626, 2099, 2315, 2834
Mva1269I	GAATGC	2 cut(s)	550, 940
MvaI	CCWGG	6 cut(s)	340, 1530, 1626, 2099, 2315, 2834
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	8 cut(s)	29, 98, 314, 884, 1338, 1407, 1763, 3139
NcoI	CCATGG	1 cut(s)	1463
NlaIV	GGNNCC	7 cut(s)	222, 916, 1630, 2630, 2780, 2838, 3187
NmuCI	GTSAC	5 cut(s)	65, 1391, 1652, 2867, 2965
NsiI	ATGCAT	1 cut(s)	1350
OliI	CACNNNNGTG	2 cut(s)	901, 1177
PagI	TCATGA	2 cut(s)	2269, 2793
PctI	GAATGC	2 cut(s)	550, 940
PdmI	GAANNNNTTC	9 cut(s)	548, 641, 1097, 1190, 1489, 2393, 2817, 2925, 3161
PfeI	GAWTC	5 cut(s)	1676, 1963, 2005, 2176, 2936
PfoI	TCCNGGA	1 cut(s)	1528
PkrI	GCNGC	7 cut(s)	1500, 1759, 2050, 2053, 2083, 2086, 2908
Ple19I	CGATCG	1 cut(s)	199
PleI	GAGTC	4 cut(s)	453, 729, 822, 1780
PpsI	GAGTC	4 cut(s)	453, 729, 822, 1780
Ppu21I	YACGTR	2 cut(s)	1725, 2509
PpuMI	RGGWCCY	2 cut(s)	208, 2836
Psp5II	RGGWCCY	2 cut(s)	208, 2836
Psp6I	CCWGG	6 cut(s)	338, 1528, 1624, 2097, 2313, 2832
PspEI	GGTNACC	1 cut(s)	731
PspGI	CCWGG	6 cut(s)	338, 1528, 1624, 2097, 2313, 2832
PspN4I	GGNNCC	7 cut(s)	222, 916, 1630, 2630, 2780, 2838, 3187
PspPI	GGNCC	9 cut(s)	22, 208, 1509, 1892, 2322, 2628, 2779, 2836, 3131
PspPPI	RGGWCCY	2 cut(s)	208, 2836
PstI	CTGCAG	1 cut(s)	2089
PstNI	CAGNNNCTG	3 cut(s)	1757, 2261, 2625
PsuI	RGATCY	1 cut(s)	2992
PvuI	CGATCG	1 cut(s)	199
RsaI	GTAC	6 cut(s)	1443, 1623, 1800, 1915, 2164, 2290
RsaNI	GTAC	6 cut(s)	1442, 1622, 1799, 1914, 2163, 2289
RseI	CAYNNNNRTG	5 cut(s)	440, 901, 1177, 2219, 2963
SaqAI	TTAA	8 cut(s)	95, 330, 395, 1362, 1743, 1950, 2031, 2739
SatI	GCNGC	7 cut(s)	1499, 1758, 2049, 2052, 2082, 2085, 2907
Sau96I	GGNCC	9 cut(s)	22, 208, 1509, 1892, 2322, 2628, 2779, 2836, 3131
SchI	GAGTC	4 cut(s)	454, 730, 823, 1781
ScrFI	CCNGG	6 cut(s)	340, 1530, 1626, 2099, 2315, 2834
SduI	GDGCHC	3 cut(s)	82, 242, 1528
SexAI	ACCWGGT	4 cut(s)	1624, 2097, 2313, 2832
SfaNI	GCATC	7 cut(s)	1335, 1726, 1744, 1803, 1840, 2332, 2876
SfcI	CTRYAG	2 cut(s)	300, 2085
SinI	GGWCC	6 cut(s)	208, 1509, 1892, 2628, 2779, 2836
SmiMI	CAYNNNNRTG	5 cut(s)	440, 901, 1177, 2219, 2963
SmlI	CTYRAG	4 cut(s)	26, 394, 1361, 1421
SmoI	CTYRAG	4 cut(s)	26, 394, 1361, 1421
SpeI	ACTAGT	1 cut(s)	2147
SsiI	CCGC	7 cut(s)	103, 168, 388, 634, 1839, 2484, 2906
StyD4I	CCNGG	6 cut(s)	338, 1528, 1624, 2097, 2313, 2832
StyI	CCWWGG	5 cut(s)	1463, 2804, 2916, 3018, 3127
TaiI	ACGT	4 cut(s)	1659, 1727, 2511, 2664
TaqI	TCGA	3 cut(s)	1068, 1161, 2057
TaqII	GACCGA	1 cut(s)	209
TauI	GCSGC	1 cut(s)	2909
TfiI	GAWTC	5 cut(s)	1676, 1963, 2005, 2176, 2936
Tru1I	TTAA	8 cut(s)	95, 330, 395, 1362, 1743, 1950, 2031, 2739
Tru9I	TTAA	8 cut(s)	95, 330, 395, 1362, 1743, 1950, 2031, 2739
TseFI	GTSAC	5 cut(s)	65, 1391, 1652, 2867, 2965
TseI	GCWGC	6 cut(s)	1498, 1757, 2048, 2051, 2081, 2084
Tsp45I	GTSAC	5 cut(s)	65, 1391, 1652, 2867, 2965
TspGWI	ACGGA	7 cut(s)	504, 690, 780, 873, 963, 1053, 1239
Vha464I	CTTAAG	2 cut(s)	394, 1361
VpaK11BI	GGWCC	6 cut(s)	208, 1509, 1892, 2628, 2779, 2836
XapI	RAATTY	5 cut(s)	343, 1573, 1667, 2016, 2799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2206
XmiI	GTMKAC	1 cut(s)	1291
XmnI	GAANNNNTTC	9 cut(s)	548, 641, 1097, 1190, 1489, 2393, 2817, 2925, 3161
Zsp2I	ATGCAT	1 cut(s)	1350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.