Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000841.1

Orthogroup ID

OG0009687

Physical Location & Seq

Genomic Coordinates Reverse (-)

41396 .. 42745

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000841.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

atggaatgcaacaaagaagaggcccttaaggccaaacagatagcagagttgaaggttgcagggtttgactttgctggggctaaacgatttgctttaaaagctcaaaacttgtatcctgagcttgatggtcttcctcaatttctggcaactctcgatgtctacacctctgctgagaagggaccaaatggggaagttaattggtacaaggtccttggagtggaacctttggctaatgaagatacaatccaaaagcaattcaggaaactggctctaatgcttcacccagataaaaataaatctgcaggtgctgaaggggcgttcaagattatatccgatgccaggagaattctccatgatcggaagcagattttaagctctacgcatgatggagttccagatgggaaatcatcgatgcctactactaagtatggtttctgtgatttctttactaggaatcattcaaacacaagggatgagaggagtgctactcctaccatgccagatgggaaatcatcgatgcctactactcagaacagtttccagttcaacaattataattcaaacacaagggatgagaggagtgctactcctaccaagcctttgtcaacttctcgtccacagaaaggtcggaaaactacattttggaccatttgcagttgttgcaaggtgtattttgagtatcttagaatgtttctcacccacaagcttcaatgtcacaactgccataatcactttatagctcataagataccagcccccaaaaatgcatcaaagtcaaggccttttgaccctcagcaacaaatatctagtcagcctaccattcccaataactcttgtgatccaggaaggacacctgctgccgccgcagatgtgagatcatcaggaatttctggtgtcaagaaaccaatgtttgctccaggatggacacatgctgcggctacagatgtgagatcgtcaggaatttctggtgtcgacaaaccaatgcttgctcctggatggacacatgctgccgctagagatgtgagatcatcaggaatttctggtctatgcttcaactcagcaactgttgaaagtatgcaaacaacagccttcagttctagtcaagctgcaggtagtgctcatccagcattcgagcaattgaatagagcgcatgaagtgtcatttccatataaggaggcccatcagtggaaatttcatgcttttgagaatccagatcctttcttatctactgtgtctcctaatgctggtttcagcactgtgcccaatggagttgagcctagaaagaaaaggcatcggtggcaagagatgggaaatgaaggagttgatatgcccaatctctcacggggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

449

Amino Acids

49.58

Weight (kDa)

9.32

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08400
malus_domestica	MD06G1141100.v1.1 MD14G1156300.v1.1
prunus_persica	Prupe.5G150300_v2.0.a1
pyrus_communis	pycom14g12990
rosa_chinensis	RchiOBHm_Chr7g0190041
rosa_laevigata	RLG00000003228 RLG00000004569
rosa_multiflora	Rmu_sc0000841.1_g000012 Rmu_sc0004886.1_g000005
rosa_roxburghii	Rroxscaffold_3G00250580 Rroxscaffold_3G00264930
rosa_rugosa	Rorug07G0103200.1
rosa_samantha	Rh7AG107400 Rh7AG237500 Rh7BG109700 Rh7BG233200 Rh7CG112000 Rh7CG253300 Rh7DG110400 Rh7DG243500
rosa_wichuraiana	Rw7G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AarI	CACCTGC	2 cut(s)	293, 862
Acc36I	ACCTGC	3 cut(s)	293, 862, 1100
AccI	GTMKAC	2 cut(s)	159, 972
AciI	CCGC	4 cut(s)	861, 864, 935, 1011
AclWI	GGATC	2 cut(s)	833, 1208
AcsI	RAATTY	5 cut(s)	345, 885, 960, 1035, 1190
AcuI	CTGAAG	2 cut(s)	330, 1075
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	5 cut(s)	217, 339, 623, 1185, 1244
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	9 cut(s)	52, 322, 462, 547, 561, 710, 1054, 1070, 1141
AjnI	CCWGG	4 cut(s)	338, 841, 916, 991
AluBI	AGCT	6 cut(s)	101, 121, 375, 706, 740, 1106
AluI	AGCT	6 cut(s)	101, 121, 375, 706, 740, 1106
Alw21I	GWGCWC	1 cut(s)	1120
Alw26I	GTCTC	1 cut(s)	1239
AlwI	GGATC	2 cut(s)	833, 1208
AlwNI	CAGNNNCTG	2 cut(s)	308, 1064
AoxI	GGCC	4 cut(s)	21, 30, 779, 1176
ApeKI	GCWGC	4 cut(s)	857, 932, 1007, 1106
ApoI	RAATTY	5 cut(s)	345, 885, 960, 1035, 1190
ArsI	GACNNNNNNTTYG	2 cut(s)	793, 825
Asp700I	GAANNNNTTC	1 cut(s)	536
AspLEI	GCGC	1 cut(s)	1150
AspS9I	GGNCC	5 cut(s)	22, 179, 208, 645, 1177
AsuHPI	GGTGA	2 cut(s)	272, 688
AvaII	GGWCC	3 cut(s)	179, 208, 645
BaeGI	GKGCMC	1 cut(s)	1263
BbsI	GAAGAC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	1120
BbvCI	CCTCAGC	1 cut(s)	792
BbvI	GCAGC	4 cut(s)	844, 919, 994, 1093
BccI	CCATC	8 cut(s)	119, 380, 392, 497, 915, 990, 1188, 1300
BciT130I	CCWGG	4 cut(s)	340, 843, 918, 993
BciVI	GTATCC	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	1239
BfaI	CTAG	5 cut(s)	450, 807, 1014, 1098, 1278
BfmI	CTRYAG	3 cut(s)	300, 939, 1107
BfrI	CTTAAG	1 cut(s)	26
BfuAI	ACCTGC	3 cut(s)	293, 862, 1100
BfuI	GTATCC	1 cut(s)	123
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	8 cut(s)	858, 861, 864, 933, 936, 1008, 1011, 1107
BlsI	GCNGC	8 cut(s)	859, 862, 865, 934, 937, 1009, 1012, 1108
Bme1390I	CCNGG	4 cut(s)	340, 843, 918, 993
Bme18I	GGWCC	3 cut(s)	179, 208, 645
BmgT120I	GGNCC	5 cut(s)	22, 179, 208, 645, 1177
BmiI	GGNNCC	2 cut(s)	180, 222
BmrFI	CCNGG	4 cut(s)	340, 843, 918, 993
BmsI	GCATC	5 cut(s)	325, 402, 507, 776, 1300
BpiI	GAAGAC	1 cut(s)	122
BplI	GAGNNNNNCTC	4 cut(s)	472, 504, 571, 603
BpmI	CTGGAG	1 cut(s)	900
Bpu10I	CCTNAGC	2 cut(s)	117, 792
Bsa29I	ATCGAT	2 cut(s)	410, 515
BsaJI	CCNNGG	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	1219, 1249
Bsc4I	CCNNNNNNNGG	5 cut(s)	217, 339, 623, 1185, 1244
Bse1I	ACTGG	2 cut(s)	270, 541
BseBI	CCWGG	4 cut(s)	340, 843, 918, 993
BseCI	ATCGAT	2 cut(s)	410, 515
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	5 cut(s)	478, 577, 926, 1001, 1120
BseLI	CCNNNNNNNGG	5 cut(s)	217, 339, 623, 1185, 1244
BseMII	CTCAG	5 cut(s)	108, 162, 542, 806, 1071
BseNI	ACTGG	2 cut(s)	270, 541
BseRI	GAGGAG	2 cut(s)	493, 592
BseSI	GKGCMC	1 cut(s)	1263
BseXI	GCAGC	4 cut(s)	844, 919, 994, 1093
BseYI	CCCAGC	1 cut(s)	74
BshFI	GGCC	4 cut(s)	23, 32, 781, 1178
BshVI	ATCGAT	2 cut(s)	410, 515
BsiHKAI	GWGCWC	1 cut(s)	1120
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	5 cut(s)	217, 339, 623, 1185, 1244
BsmAI	GTCTC	1 cut(s)	1239
BsmFI	GGGAC	1 cut(s)	192
BsmI	GAATGC	2 cut(s)	11, 1127
BsnI	GGCC	4 cut(s)	23, 32, 781, 1178
Bsp1286I	GDGCHC	2 cut(s)	1120, 1263
Bsp143I	GATC	6 cut(s)	355, 838, 875, 950, 1025, 1213
BspACI	CCGC	4 cut(s)	861, 864, 935, 1011
BspANI	GGCC	4 cut(s)	23, 32, 781, 1178
BspCNI	CTCAG	5 cut(s)	109, 163, 541, 805, 1070
BspDI	ATCGAT	2 cut(s)	410, 515
BspLI	GGNNCC	2 cut(s)	180, 222
BspMAI	CTGCAG	2 cut(s)	304, 1111
BspMI	ACCTGC	3 cut(s)	293, 862, 1100
BspPI	GGATC	2 cut(s)	833, 1208
BspTI	CTTAAG	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	270, 541
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	6 cut(s)	355, 838, 875, 950, 1025, 1213
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	4 cut(s)	340, 843, 918, 993
Bst4CI	ACNGT	4 cut(s)	536, 1066, 1231, 1258
Bst6I	CTCTTC	1 cut(s)	12
BstAFI	CTTAAG	1 cut(s)	26
BstAPI	GCANNNNNTGC	2 cut(s)	660, 1115
BstC8I	GCNNGC	1 cut(s)	987
BstDEI	CTNAG	7 cut(s)	117, 171, 423, 528, 683, 792, 1057
BstF5I	GGATG	5 cut(s)	478, 577, 926, 1001, 1120
BstHHI	GCGC	1 cut(s)	1150
BstKTI	GATC	6 cut(s)	358, 841, 878, 953, 1028, 1216
BstMAI	GTCTC	1 cut(s)	1239
BstMBI	GATC	6 cut(s)	355, 838, 875, 950, 1025, 1213
BstMWI	GCNNNNNNNGC	8 cut(s)	29, 98, 314, 660, 863, 1115, 1124, 1297
BstNI	CCWGG	4 cut(s)	340, 843, 918, 993
BstNSI	RCATGY	2 cut(s)	932, 1007
BstSCI	CCNGG	4 cut(s)	338, 841, 916, 991
BstSFI	CTRYAG	3 cut(s)	300, 939, 1107
BstSLI	GKGCMC	1 cut(s)	1263
BstV1I	GCAGC	4 cut(s)	844, 919, 994, 1093
BstV2I	GAAGAC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	1213
BstYI	RGATCY	1 cut(s)	1213
Bsu15I	ATCGAT	2 cut(s)	410, 515
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	4 cut(s)	23, 32, 781, 1178
BsuTUI	ATCGAT	2 cut(s)	410, 515
BtsCI	GGATG	5 cut(s)	478, 577, 926, 1001, 1120
BtsIMutI	CAGTG	2 cut(s)	1190, 1254
BveI	ACCTGC	3 cut(s)	293, 862, 1100
Cac8I	GCNNGC	1 cut(s)	987
CaiI	CAGNNNCTG	2 cut(s)	308, 1064
CfoI	GCGC	1 cut(s)	1150
Cfr13I	GGNCC	5 cut(s)	22, 179, 208, 645, 1177
ClaI	ATCGAT	2 cut(s)	410, 515
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	7 cut(s)	353, 383, 496, 929, 1004, 1151, 1196
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	7 cut(s)	117, 171, 423, 528, 683, 792, 1057
DpnI	GATC	6 cut(s)	357, 840, 877, 952, 1027, 1215
DpnII	GATC	6 cut(s)	355, 838, 875, 950, 1025, 1213
DraI	TTTAAA	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	211
Eco147I	AGGCCT	1 cut(s)	781
Eco47I	GGWCC	3 cut(s)	179, 208, 645
Eco57I	CTGAAG	2 cut(s)	330, 1075
EcoO109I	RGGNCCY	2 cut(s)	22, 208
EcoRI	GAATTC	1 cut(s)	345
EcoRII	CCWGG	4 cut(s)	338, 841, 916, 991
EcoT14I	CCWWGG	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	769
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	7 cut(s)	356, 386, 499, 932, 1007, 1154, 1199
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	7 cut(s)	352, 382, 495, 928, 1003, 1150, 1195
FblI	GTMKAC	2 cut(s)	159, 972
Fnu4HI	GCNGC	8 cut(s)	858, 861, 864, 933, 936, 1008, 1011, 1107
FokI	GGATG	5 cut(s)	485, 584, 933, 1008, 1107
Fsp4HI	GCNGC	8 cut(s)	858, 861, 864, 933, 936, 1008, 1011, 1107
FspBI	CTAG	5 cut(s)	450, 807, 1014, 1098, 1278
GlaI	GCGC	1 cut(s)	1149
GluI	GCNGC	8 cut(s)	858, 861, 864, 933, 936, 1008, 1011, 1107
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	900
HaeIII	GGCC	4 cut(s)	23, 32, 781, 1178
HhaI	GCGC	1 cut(s)	1150
Hin1II	CATG	7 cut(s)	356, 386, 499, 932, 1007, 1154, 1199
Hin6I	GCGC	1 cut(s)	1148
HinP1I	GCGC	1 cut(s)	1148
HincII	GTYRAC	2 cut(s)	606, 973
HindII	GTYRAC	2 cut(s)	606, 973
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	2 cut(s)	454, 1207
HphI	GGTGA	2 cut(s)	272, 688
Hpy166II	GTNNAC	4 cut(s)	160, 606, 617, 973
Hpy188I	TCNGA	4 cut(s)	334, 360, 531, 630
Hpy8I	GTNNAC	4 cut(s)	160, 606, 617, 973
HpyAV	CCTTC	6 cut(s)	46, 169, 305, 840, 1099, 1310
HpyCH4III	ACNGT	4 cut(s)	536, 1066, 1231, 1258
HpyCH4V	TGCA	8 cut(s)	9, 59, 302, 654, 663, 767, 1078, 1109
HpyF10VI	GCNNNNNNNGC	8 cut(s)	29, 98, 314, 660, 863, 1115, 1124, 1297
HpyF3I	CTNAG	7 cut(s)	117, 171, 423, 528, 683, 792, 1057
Hsp92II	CATG	7 cut(s)	356, 386, 499, 932, 1007, 1154, 1199
HspAI	GCGC	1 cut(s)	1148
Kzo9I	GATC	6 cut(s)	355, 838, 875, 950, 1025, 1213
LmnI	GCTCC	2 cut(s)	919, 994
Lsp1109I	GCAGC	4 cut(s)	844, 919, 994, 1093
LweI	GCATC	5 cut(s)	325, 402, 507, 776, 1300
MaeI	CTAG	5 cut(s)	450, 807, 1014, 1098, 1278
MaeIII	GTNAC	1 cut(s)	713
MalI	GATC	6 cut(s)	357, 840, 877, 952, 1027, 1215
MboI	GATC	6 cut(s)	355, 838, 875, 950, 1025, 1213
MboII	GAAGA	3 cut(s)	29, 122, 248
MfeI	CAATTG	1 cut(s)	1136
MflI	RGATCY	1 cut(s)	1213
MhlI	GDGCHC	2 cut(s)	1120, 1263
MmeI	TCCRAC	1 cut(s)	608
MnlI	CCTC	7 cut(s)	13, 144, 175, 471, 570, 801, 1168
Mph1103I	ATGCAT	1 cut(s)	769
MroXI	GAANNNNTTC	1 cut(s)	536
MseI	TTAA	4 cut(s)	27, 95, 195, 371
MspCI	CTTAAG	1 cut(s)	26
MspR9I	CCNGG	4 cut(s)	340, 843, 918, 993
MunI	CAATTG	1 cut(s)	1136
Mva1269I	GAATGC	2 cut(s)	11, 1127
MvaI	CCWGG	4 cut(s)	340, 843, 918, 993
MwoI	GCNNNNNNNGC	8 cut(s)	29, 98, 314, 660, 863, 1115, 1124, 1297
NdeII	GATC	6 cut(s)	355, 838, 875, 950, 1025, 1213
NlaIII	CATG	7 cut(s)	356, 386, 499, 932, 1007, 1154, 1199
NlaIV	GGNNCC	2 cut(s)	180, 222
NmuCI	GTSAC	1 cut(s)	713
NsiI	ATGCAT	1 cut(s)	769
NspI	RCATGY	2 cut(s)	932, 1007
PaqCI	CACCTGC	2 cut(s)	293, 862
PceI	AGGCCT	1 cut(s)	781
PctI	GAATGC	2 cut(s)	11, 1127
PdmI	GAANNNNTTC	1 cut(s)	536
PfeI	GAWTC	2 cut(s)	454, 1207
PfoI	TCCNGGA	3 cut(s)	841, 916, 991
PkrI	GCNGC	8 cut(s)	859, 862, 865, 934, 937, 1009, 1012, 1108
PpuMI	RGGWCCY	1 cut(s)	208
PsiI	TTATAA	1 cut(s)	555
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	4 cut(s)	338, 841, 916, 991
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	4 cut(s)	338, 841, 916, 991
PspN4I	GGNNCC	2 cut(s)	180, 222
PspPI	GGNCC	5 cut(s)	22, 179, 208, 645, 1177
PspPPI	RGGWCCY	1 cut(s)	208
PstI	CTGCAG	2 cut(s)	304, 1111
PstNI	CAGNNNCTG	2 cut(s)	308, 1064
PsuI	RGATCY	1 cut(s)	1213
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SalI	GTCGAC	1 cut(s)	971
SaqAI	TTAA	4 cut(s)	27, 95, 195, 371
SatI	GCNGC	8 cut(s)	858, 861, 864, 933, 936, 1008, 1011, 1107
Sau3AI	GATC	6 cut(s)	355, 838, 875, 950, 1025, 1213
Sau96I	GGNCC	5 cut(s)	22, 179, 208, 645, 1177
ScrFI	CCNGG	4 cut(s)	340, 843, 918, 993
SduI	GDGCHC	2 cut(s)	1120, 1263
SfaNI	GCATC	5 cut(s)	325, 402, 507, 776, 1300
SfcI	CTRYAG	3 cut(s)	300, 939, 1107
SfiI	GGCCNNNNNGGCC	1 cut(s)	29
SinI	GGWCC	3 cut(s)	179, 208, 645
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SseBI	AGGCCT	1 cut(s)	781
SsiI	CCGC	4 cut(s)	861, 864, 935, 1011
SspMI	CTAG	5 cut(s)	450, 807, 1014, 1098, 1278
StuI	AGGCCT	1 cut(s)	781
StyD4I	CCNGG	4 cut(s)	338, 841, 916, 991
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	4 cut(s)	536, 1066, 1231, 1258
TaqI	TCGA	5 cut(s)	153, 410, 515, 972, 1131
TauI	GCSGC	4 cut(s)	863, 866, 938, 1013
TfiI	GAWTC	2 cut(s)	454, 1207
Tru1I	TTAA	4 cut(s)	27, 95, 195, 371
Tru9I	TTAA	4 cut(s)	27, 95, 195, 371
TscAI	CASTG	2 cut(s)	1190, 1261
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	4 cut(s)	857, 932, 1007, 1106
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	4 cut(s)	249, 1167, 1184, 1329
TspRI	CASTG	2 cut(s)	1190, 1261
Vha464I	CTTAAG	1 cut(s)	26
VpaK11BI	GGWCC	3 cut(s)	179, 208, 645
XapI	RAATTY	5 cut(s)	345, 885, 960, 1035, 1190
XceI	RCATGY	2 cut(s)	932, 1007
XmiI	GTMKAC	2 cut(s)	159, 972
XmnI	GAANNNNTTC	1 cut(s)	536
XspI	CTAG	5 cut(s)	450, 807, 1014, 1098, 1278
Zsp2I	ATGCAT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.