Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009687

Physical Location & Seq

Genomic Coordinates Forward (+)

23216753 .. 23218207

Gene Structure 1455 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG237500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGAATGCAACAAAGAAGAGGCCTTTAAGGCCAAACAGATAGCAGAGTTGAAGGTTGCAGGGTTTGACTTTGCTGGGGCTAAACAATTTGCTTTAAAAGCTCAAAACTTGTATCCTGAGCTTGATGGTCTTCCTCAATTTCTGGCAACTCTCGATGTCTACACCTCTGCTGAGAAGGGACCAAATGGGGAAGTTAATTGGTACAAGGTCCTTGGAGTGGAACCTTTGGCTAATGAAGATACAATCCAAAAGCAATTCAGGAAACTGGCTTTAATGCTTCACCCAGATAAAAATAAATCTGCAGGTGCTGAAGGGGCGTTCAAGATTATATCCGATGCCAGGAGAATTCTTCATGACCGGAAGCAGATTTTAAGCTCTACGCATGATGGAGTTCCAGATGGGAAATCATCGATGCCTACTACAAAGTATGGTTTCTGTGATTTCTTTACTAGGAATCATTCAAACACAAGGGATGAGAGGAGTGCTACTCCTACCATGCCAGATGGGAAATCATCGATGCCTACTACACAGTTTAACAGTTATCATTCAAAGACAAGGGACCAGAGGAGTTCTACTCCTACCATGCCAGATGGGAAATCATCGATGCCTACTACTCAGAATAAGTTCCAGTTCAACAATTATAATTCAAACACAAGGGATGAGAGGAATGCTACTCCTACCAAGCCTTTGACAACTTCTCGTCCACAGAAAGGTCGGAAAACTACATTTTGGACCATTTGCAGTTGTTGCAAGGTGTATTTTGAGTATCTTAGAATGTTTCTCACCCACAAGCTTCAATGTCACAACTGCCATAATCACTTTATAGCTCATAAGATACCAGCCCCCAAAAATGCATCAAAGTCAAGGCCTTTTGACCCTCAGCAACAAATACCTAGTCAGCCTACCATTCCCAATAACTCTTGTGATCCAGGAAGGACACCTGCTGCTGCCGCAGATGTGAGATCATCAGGAATTTCTGGTGTCAACAAACCAATGTTTGCTCCAGGATGGACACATGCTGCGGCTGCAGATGTGAGATCATCAGGAATTTCTGGTGTCGACAAACCAATGCTTGCTCCTGGATGGACACATGCTGCCGCTAGAGATGTGAGATCATCAGGAATTTCTGGTCTATGCTTCAACTCAGCAACTGCTGAAAGTATGCAAACAACAGCCTTCAGTTCTAGTCAAGCTGCAGGTAGTGCTCATCCAGCATTCGGGCAATTGAATAGAGCGCATGAAGTGTCATTTCCATATAAGGAGGCCCATCAGTGCAAATTTCATGCTTTTGAGAATCCAGATCCTTTCTTATCTACAGTATCTCCTAATACTGGTTTCAGCACTGTGCCCAATGGAGTTGAGCCTAGAAAGAAAAGGCATCGGTGGCAAGAGATGCAAACTAATGTGGGAATGGGAAATGAAGGAGTTGATATGCCCAATCTCTCACGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

484

Amino Acids

53.44

Weight (kDa)

9.31

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	66 - 122	3e-17	DnaJ domain
Zn_ribbon_20	PF23551	243 - 276	1.6e-09	Zinc beta-ribbon domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009687)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08400
malus_domestica	MD06G1141100.v1.1 MD14G1156300.v1.1
prunus_persica	Prupe.5G150300_v2.0.a1
pyrus_communis	pycom14g12990
rosa_chinensis	RchiOBHm_Chr7g0190041
rosa_laevigata	RLG00000003228 RLG00000004569
rosa_multiflora	Rmu_sc0000841.1_g000012 Rmu_sc0004886.1_g000005
rosa_roxburghii	Rroxscaffold_3G00250580 Rroxscaffold_3G00264930
rosa_rugosa	Rorug07G0103200.1
rosa_samantha	Rh7AG107400 Rh7AG237500 Rh7BG109700 Rh7BG233200 Rh7CG112000 Rh7CG253300 Rh7DG110400 Rh7DG243500
rosa_wichuraiana	Rw7G009270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	642
AarI	CACCTGC	2 cut(s)	293, 949
Acc36I	ACCTGC	3 cut(s)	293, 949, 1187
AccI	GTMKAC	2 cut(s)	159, 1059
AciI	CCGC	3 cut(s)	951, 1022, 1098
AclWI	GGATC	2 cut(s)	920, 1295
AcsI	RAATTY	5 cut(s)	345, 972, 1047, 1122, 1277
AcuI	CTGAAG	2 cut(s)	330, 1162
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	5 cut(s)	217, 339, 710, 1217, 1331
AgsI	TTSAA	9 cut(s)	52, 322, 462, 549, 634, 648, 797, 1141, 1228
AjnI	CCWGG	4 cut(s)	338, 928, 1003, 1078
AluBI	AGCT	6 cut(s)	101, 121, 375, 793, 827, 1193
AluI	AGCT	6 cut(s)	101, 121, 375, 793, 827, 1193
Alw21I	GWGCWC	1 cut(s)	1207
AlwI	GGATC	2 cut(s)	920, 1295
AlwNI	CAGNNNCTG	2 cut(s)	308, 1151
AoxI	GGCC	4 cut(s)	21, 30, 866, 1263
ApeKI	GCWGC	6 cut(s)	944, 947, 1019, 1025, 1094, 1193
ApoI	RAATTY	5 cut(s)	345, 972, 1047, 1122, 1277
ArsI	GACNNNNNNTTYG	2 cut(s)	880, 912
Asp700I	GAANNNNTTC	1 cut(s)	623
AspLEI	GCGC	1 cut(s)	1237
AspS9I	GGNCC	5 cut(s)	179, 208, 559, 732, 1264
AsuHPI	GGTGA	2 cut(s)	272, 775
AvaII	GGWCC	4 cut(s)	179, 208, 559, 732
BaeGI	GKGCMC	1 cut(s)	1350
BbsI	GAAGAC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	1207
BbvCI	CCTCAGC	1 cut(s)	879
BbvI	GCAGC	6 cut(s)	931, 934, 1006, 1012, 1081, 1180
BccI	CCATC	8 cut(s)	119, 380, 392, 497, 584, 1002, 1077, 1275
BciT130I	CCWGG	4 cut(s)	340, 930, 1005, 1080
BciVI	GTATCC	1 cut(s)	123
BfaI	CTAG	5 cut(s)	450, 894, 1101, 1185, 1365
BfmI	CTRYAG	4 cut(s)	300, 1026, 1194, 1314
BfuAI	ACCTGC	3 cut(s)	293, 949, 1187
BfuI	GTATCC	1 cut(s)	123
BglI	GCCNNNNNGGC	1 cut(s)	29
BisI	GCNGC	9 cut(s)	945, 948, 951, 1020, 1023, 1026, 1095, 1098, 1194
BlsI	GCNGC	9 cut(s)	946, 949, 952, 1021, 1024, 1027, 1096, 1099, 1195
Bme1390I	CCNGG	4 cut(s)	340, 930, 1005, 1080
Bme18I	GGWCC	4 cut(s)	179, 208, 559, 732
BmgT120I	GGNCC	5 cut(s)	179, 208, 559, 732, 1264
BmiI	GGNNCC	3 cut(s)	180, 222, 560
BmrFI	CCNGG	4 cut(s)	340, 930, 1005, 1080
BmsI	GCATC	7 cut(s)	325, 402, 507, 594, 863, 1383, 1387
BpiI	GAAGAC	1 cut(s)	122
BplI	GAGNNNNNCTC	4 cut(s)	472, 504, 559, 591
BpmI	CTGGAG	1 cut(s)	987
Bpu10I	CCTNAGC	2 cut(s)	117, 879
Bsa29I	ATCGAT	3 cut(s)	410, 515, 602
BsaJI	CCNNGG	1 cut(s)	211
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	2 cut(s)	1306, 1336
Bsc4I	CCNNNNNNNGG	5 cut(s)	217, 339, 710, 1217, 1331
Bse1I	ACTGG	3 cut(s)	270, 628, 1336
BseBI	CCWGG	4 cut(s)	340, 930, 1005, 1080
BseCI	ATCGAT	3 cut(s)	410, 515, 602
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	5 cut(s)	478, 664, 1013, 1088, 1207
BseLI	CCNNNNNNNGG	5 cut(s)	217, 339, 710, 1217, 1331
BseMII	CTCAG	5 cut(s)	108, 162, 629, 893, 1158
BseNI	ACTGG	3 cut(s)	270, 628, 1336
BseRI	GAGGAG	2 cut(s)	493, 580
BseSI	GKGCMC	1 cut(s)	1350
BseXI	GCAGC	6 cut(s)	931, 934, 1006, 1012, 1081, 1180
BseYI	CCCAGC	1 cut(s)	74
BshFI	GGCC	4 cut(s)	23, 32, 868, 1265
BshVI	ATCGAT	3 cut(s)	410, 515, 602
BsiHKAI	GWGCWC	1 cut(s)	1207
BsiSI	CCGG	1 cut(s)	358
BslFI	GGGAC	2 cut(s)	192, 572
BslI	CCNNNNNNNGG	5 cut(s)	217, 339, 710, 1217, 1331
BsmFI	GGGAC	2 cut(s)	192, 572
BsmI	GAATGC	3 cut(s)	11, 673, 1214
BsnI	GGCC	4 cut(s)	23, 32, 868, 1265
Bsp1286I	GDGCHC	2 cut(s)	1207, 1350
Bsp143I	GATC	5 cut(s)	925, 962, 1037, 1112, 1300
BspACI	CCGC	3 cut(s)	951, 1022, 1098
BspANI	GGCC	4 cut(s)	23, 32, 868, 1265
BspCNI	CTCAG	5 cut(s)	109, 163, 628, 892, 1157
BspDI	ATCGAT	3 cut(s)	410, 515, 602
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	3 cut(s)	180, 222, 560
BspMAI	CTGCAG	3 cut(s)	304, 1030, 1198
BspMI	ACCTGC	3 cut(s)	293, 949, 1187
BspPI	GGATC	2 cut(s)	920, 1295
BsrI	ACTGG	3 cut(s)	270, 628, 1336
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	5 cut(s)	925, 962, 1037, 1112, 1300
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	4 cut(s)	340, 930, 1005, 1080
Bst4CI	ACNGT	4 cut(s)	531, 539, 1318, 1345
Bst6I	CTCTTC	1 cut(s)	12
BstAPI	GCANNNNNTGC	3 cut(s)	747, 1202, 1393
BstC8I	GCNNGC	1 cut(s)	1074
BstDEI	CTNAG	6 cut(s)	117, 171, 615, 770, 879, 1144
BstF5I	GGATG	5 cut(s)	478, 664, 1013, 1088, 1207
BstHHI	GCGC	1 cut(s)	1237
BstKTI	GATC	5 cut(s)	928, 965, 1040, 1115, 1303
BstMBI	GATC	5 cut(s)	925, 962, 1037, 1112, 1300
BstNI	CCWGG	4 cut(s)	340, 930, 1005, 1080
BstNSI	RCATGY	2 cut(s)	1019, 1094
BstSCI	CCNGG	4 cut(s)	338, 928, 1003, 1078
BstSFI	CTRYAG	4 cut(s)	300, 1026, 1194, 1314
BstSLI	GKGCMC	1 cut(s)	1350
BstV1I	GCAGC	6 cut(s)	931, 934, 1006, 1012, 1081, 1180
BstV2I	GAAGAC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	1300
BstYI	RGATCY	1 cut(s)	1300
Bsu15I	ATCGAT	3 cut(s)	410, 515, 602
BsuI	GTATCC	1 cut(s)	123
BsuRI	GGCC	4 cut(s)	23, 32, 868, 1265
BsuTUI	ATCGAT	3 cut(s)	410, 515, 602
BtsCI	GGATG	5 cut(s)	478, 664, 1013, 1088, 1207
BtsIMutI	CAGTG	2 cut(s)	1277, 1341
BveI	ACCTGC	3 cut(s)	293, 949, 1187
Cac8I	GCNNGC	1 cut(s)	1074
CaiI	CAGNNNCTG	2 cut(s)	308, 1151
CciI	TCATGA	1 cut(s)	352
CfoI	GCGC	1 cut(s)	1237
Cfr13I	GGNCC	5 cut(s)	179, 208, 559, 732, 1264
ClaI	ATCGAT	3 cut(s)	410, 515, 602
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	8 cut(s)	353, 383, 496, 583, 1016, 1091, 1238, 1283
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	6 cut(s)	117, 171, 615, 770, 879, 1144
DpnI	GATC	5 cut(s)	927, 964, 1039, 1114, 1302
DpnII	GATC	5 cut(s)	925, 962, 1037, 1112, 1300
DraI	TTTAAA	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	211
Eco147I	AGGCCT	2 cut(s)	23, 868
Eco47I	GGWCC	4 cut(s)	179, 208, 559, 732
Eco57I	CTGAAG	2 cut(s)	330, 1162
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	345
EcoRII	CCWGG	4 cut(s)	338, 928, 1003, 1078
EcoT14I	CCWWGG	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	856
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	8 cut(s)	356, 386, 499, 586, 1019, 1094, 1241, 1286
FaqI	GGGAC	2 cut(s)	192, 572
FatI	CATG	8 cut(s)	352, 382, 495, 582, 1015, 1090, 1237, 1282
FblI	GTMKAC	2 cut(s)	159, 1059
Fnu4HI	GCNGC	9 cut(s)	945, 948, 951, 1020, 1023, 1026, 1095, 1098, 1194
FokI	GGATG	5 cut(s)	485, 671, 1020, 1095, 1194
Fsp4HI	GCNGC	9 cut(s)	945, 948, 951, 1020, 1023, 1026, 1095, 1098, 1194
FspBI	CTAG	5 cut(s)	450, 894, 1101, 1185, 1365
GlaI	GCGC	1 cut(s)	1236
GluI	GCNGC	9 cut(s)	945, 948, 951, 1020, 1023, 1026, 1095, 1098, 1194
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	987
HaeIII	GGCC	4 cut(s)	23, 32, 868, 1265
HapII	CCGG	1 cut(s)	358
HhaI	GCGC	1 cut(s)	1237
Hin1II	CATG	8 cut(s)	356, 386, 499, 586, 1019, 1094, 1241, 1286
Hin6I	GCGC	1 cut(s)	1235
HinP1I	GCGC	1 cut(s)	1235
HincII	GTYRAC	2 cut(s)	985, 1060
HindII	GTYRAC	2 cut(s)	985, 1060
HindIII	AAGCTT	1 cut(s)	791
HinfI	GANTC	2 cut(s)	454, 1294
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	2 cut(s)	272, 775
Hpy166II	GTNNAC	4 cut(s)	160, 704, 985, 1060
Hpy188I	TCNGA	3 cut(s)	334, 618, 717
Hpy8I	GTNNAC	4 cut(s)	160, 704, 985, 1060
HpyAV	CCTTC	6 cut(s)	46, 169, 305, 927, 1186, 1415
HpyCH4III	ACNGT	4 cut(s)	531, 539, 1318, 1345
HpyF3I	CTNAG	6 cut(s)	117, 171, 615, 770, 879, 1144
Hsp92II	CATG	8 cut(s)	356, 386, 499, 586, 1019, 1094, 1241, 1286
HspAI	GCGC	1 cut(s)	1235
Kzo9I	GATC	5 cut(s)	925, 962, 1037, 1112, 1300
LmnI	GCTCC	2 cut(s)	1006, 1081
Lsp1109I	GCAGC	6 cut(s)	931, 934, 1006, 1012, 1081, 1180
LweI	GCATC	7 cut(s)	325, 402, 507, 594, 863, 1383, 1387
MaeI	CTAG	5 cut(s)	450, 894, 1101, 1185, 1365
MaeIII	GTNAC	1 cut(s)	800
MalI	GATC	5 cut(s)	927, 964, 1039, 1114, 1302
MboI	GATC	5 cut(s)	925, 962, 1037, 1112, 1300
MboII	GAAGA	4 cut(s)	29, 122, 248, 341
MfeI	CAATTG	1 cut(s)	1223
MflI	RGATCY	1 cut(s)	1300
MhlI	GDGCHC	2 cut(s)	1207, 1350
MmeI	TCCRAC	1 cut(s)	695
MnlI	CCTC	8 cut(s)	13, 144, 175, 471, 558, 657, 888, 1255
Mph1103I	ATGCAT	1 cut(s)	856
MroXI	GAANNNNTTC	1 cut(s)	623
MseI	TTAA	6 cut(s)	27, 95, 195, 272, 371, 534
MspI	CCGG	1 cut(s)	358
MspR9I	CCNGG	4 cut(s)	340, 930, 1005, 1080
MunI	CAATTG	1 cut(s)	1223
Mva1269I	GAATGC	3 cut(s)	11, 673, 1214
MvaI	CCWGG	4 cut(s)	340, 930, 1005, 1080
NdeII	GATC	5 cut(s)	925, 962, 1037, 1112, 1300
NlaIII	CATG	8 cut(s)	356, 386, 499, 586, 1019, 1094, 1241, 1286
NlaIV	GGNNCC	3 cut(s)	180, 222, 560
NmuCI	GTSAC	1 cut(s)	800
NsiI	ATGCAT	1 cut(s)	856
NspI	RCATGY	2 cut(s)	1019, 1094
PagI	TCATGA	1 cut(s)	352
PaqCI	CACCTGC	2 cut(s)	293, 949
PceI	AGGCCT	2 cut(s)	23, 868
PctI	GAATGC	3 cut(s)	11, 673, 1214
PdmI	GAANNNNTTC	1 cut(s)	623
PfeI	GAWTC	2 cut(s)	454, 1294
PfoI	TCCNGGA	3 cut(s)	928, 1003, 1078
PkrI	GCNGC	9 cut(s)	946, 949, 952, 1021, 1024, 1027, 1096, 1099, 1195
PpuMI	RGGWCCY	1 cut(s)	208
PsiI	TTATAA	1 cut(s)	642
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	4 cut(s)	338, 928, 1003, 1078
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	4 cut(s)	338, 928, 1003, 1078
PspN4I	GGNNCC	3 cut(s)	180, 222, 560
PspPI	GGNCC	5 cut(s)	179, 208, 559, 732, 1264
PspPPI	RGGWCCY	1 cut(s)	208
PstI	CTGCAG	3 cut(s)	304, 1030, 1198
PstNI	CAGNNNCTG	2 cut(s)	308, 1151
PsuI	RGATCY	1 cut(s)	1300
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SalI	GTCGAC	1 cut(s)	1058
SaqAI	TTAA	6 cut(s)	27, 95, 195, 272, 371, 534
SatI	GCNGC	9 cut(s)	945, 948, 951, 1020, 1023, 1026, 1095, 1098, 1194
Sau3AI	GATC	5 cut(s)	925, 962, 1037, 1112, 1300
Sau96I	GGNCC	5 cut(s)	179, 208, 559, 732, 1264
ScrFI	CCNGG	4 cut(s)	340, 930, 1005, 1080
SduI	GDGCHC	2 cut(s)	1207, 1350
SfaNI	GCATC	7 cut(s)	325, 402, 507, 594, 863, 1383, 1387
SfcI	CTRYAG	4 cut(s)	300, 1026, 1194, 1314
SfiI	GGCCNNNNNGGCC	1 cut(s)	29
SinI	GGWCC	4 cut(s)	179, 208, 559, 732
SseBI	AGGCCT	2 cut(s)	23, 868
SsiI	CCGC	3 cut(s)	951, 1022, 1098
SspMI	CTAG	5 cut(s)	450, 894, 1101, 1185, 1365
StuI	AGGCCT	2 cut(s)	23, 868
StyD4I	CCNGG	4 cut(s)	338, 928, 1003, 1078
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	4 cut(s)	531, 539, 1318, 1345
TaqI	TCGA	5 cut(s)	153, 410, 515, 602, 1059
TauI	GCSGC	3 cut(s)	953, 1025, 1100
TfiI	GAWTC	2 cut(s)	454, 1294
Tru1I	TTAA	6 cut(s)	27, 95, 195, 272, 371, 534
Tru9I	TTAA	6 cut(s)	27, 95, 195, 272, 371, 534
TscAI	CASTG	2 cut(s)	1277, 1348
TseFI	GTSAC	1 cut(s)	800
TseI	GCWGC	6 cut(s)	944, 947, 1019, 1025, 1094, 1193
Tsp45I	GTSAC	1 cut(s)	800
TspDTI	ATGAA	5 cut(s)	249, 341, 1254, 1271, 1434
TspRI	CASTG	2 cut(s)	1277, 1348
VpaK11BI	GGWCC	4 cut(s)	179, 208, 559, 732
XapI	RAATTY	5 cut(s)	345, 972, 1047, 1122, 1277
XceI	RCATGY	2 cut(s)	1019, 1094
XmiI	GTMKAC	2 cut(s)	159, 1059
XmnI	GAANNNNTTC	1 cut(s)	623
XspI	CTAG	5 cut(s)	450, 894, 1101, 1185, 1365
Zsp2I	ATGCAT	1 cut(s)	856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.