Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0014742

Physical Location & Seq

Genomic Coordinates Reverse (-)

32536166 .. 32536836

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1188300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGATTTGCTTCTTCACAACATTACTTTTCTGTCAAGCGGAACTGCAATGCGAAAATGTTTTTGCTGCGGTTGCTGGAGGAATCGGGCTGATACGAAATCCCTTTAAGAGATATGATCCAGTTGCAAACTTTTCTGCCGTGAGAGGAGGCAGTTCTCTGATCTCCATCGGAACCGACCTTGCCTTCGACATATCTGCAGGAACATTAGACAAGTTCAATGCCAGTTTCAGCTTCAATAGCGACTTTGTTTCTGCTTCCTTGTCCCTGGACAAGCTAGACACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0016020 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

95

Amino Acids

10.06

Weight (kDa)

4.47

Isoelectric Point (pI)

16.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014742)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15480
malus_domestica	MD06G1188300.v1.1 MD14G1194800.v1.1
prunus_persica	Prupe.5G186500_v2.0.a1
pyrus_communis	pycom14g16180
rosa_chinensis	RchiOBHm_Chr7g0180611
rosa_laevigata	RLG00000005250
rosa_multiflora	Rmu_sc0005690.1_g000021 Rmu_sc0023372.1_g000001 Rmu_sc0023372.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272740
rosa_rugosa	Rorug06G0434600
rosa_samantha	Rh7AG035600 Rh7BG035500 Rh7CG037200 Rh7DG035800
rosa_wichuraiana	Rw7G002930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	38, 68
AclWI	GGATC	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	217, 235
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	2 cut(s)	231, 274
AluI	AGCT	2 cut(s)	231, 274
AlwI	GGATC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	65
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	1 cut(s)	266
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	266
BpmI	CTGGAG	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	264
Bse1I	ACTGG	2 cut(s)	119, 222
Bse3DI	GCAATG	1 cut(s)	53
Bse8I	GATNNNNATC	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	264
BseJI	GATNNNNATC	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	53
BseNI	ACTGG	2 cut(s)	119, 222
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	115, 159
BspACI	CCGC	2 cut(s)	38, 68
BspLI	GGNNCC	1 cut(s)	172
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	119, 222
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	115, 159
Bst2UI	CCWGG	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	282
BstKTI	GATC	2 cut(s)	118, 162
BstMBI	GATC	2 cut(s)	115, 159
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 237
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	52
CviJI	RGCY	3 cut(s)	88, 231, 274
CviKI_1	RGCY	3 cut(s)	88, 231, 274
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	2 cut(s)	117, 161
DpnII	GATC	2 cut(s)	115, 159
EcoRII	CCWGG	1 cut(s)	264
FaiI	YATR	2 cut(s)	114, 191
FaqI	GGGAC	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	96
HinfI	GANTC	1 cut(s)	81
Hpy188I	TCNGA	2 cut(s)	159, 170
HpyAV	CCTTC	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	46, 125, 197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 237
HpyF3I	CTNAG	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	115, 159
LpnPI	CCDG	6 cut(s)	60, 132, 183, 235, 251, 278
Lsp1109I	GCAGC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	275
MalI	GATC	2 cut(s)	117, 161
MboI	GATC	2 cut(s)	115, 159
MboII	GAAGA	1 cut(s)	4
MnlI	CCTC	3 cut(s)	71, 137, 140
MseI	TTAA	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	71, 237
NdeII	GATC	2 cut(s)	115, 159
NlaIV	GGNNCC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	172
PstI	CTGCAG	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	2 cut(s)	115, 159
ScrFI	CCNGG	1 cut(s)	266
SetI	ASST	3 cut(s)	180, 233, 276
SfcI	CTRYAG	1 cut(s)	195
SsiI	CCGC	2 cut(s)	38, 68
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	264
TaqI	TCGA	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseI	GCWGC	1 cut(s)	65
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.