Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005690.1

Orthogroup ID

OG0014742

Physical Location & Seq

Genomic Coordinates Reverse (-)

77420 .. 78580

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005690.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgattaacactccaggtgaattctatgacattggcaagaaggccagagatcttctgcataaggactatgctcatcaaccacgcgtgccaattcattttgattatcgaagcctcaagtcaaatactgatatctcatgcagagttaaagatattgttccaattgttcctgaactcaacacccttttcagttttgtcacgccaaattctggcaaggtggagctggaatacctaaatggtcttgctggtattagtggaggcattggactgatacaaaacgatgcccttagaagatttgaaccaattgcaaacctttcaggtgtgataggacgaggcgctcttttctccttcggaactgaccttgcctttgacatatatacagggcaattcaacaaattcaatgctggtttgagcttgaatagtgactttgtcaatacttccttgtccttggatgggcttgacagcttgaaagcttcatgccactgcttggtgaacccactgaccaagacggccattgcagcagagttgaaacacagcttttcaggcaacaacactgcacttgtaatcggcgcccagcacgcatttgccccctccacactggtcaagggtcgaattagcacacacggcaaggttggtgctcttatacggcaaggattgtgggagaggattttcctgtctctatctggagaagtggattttacagacacaaatccaaatgcaactctaaaaatcggattatctctggctgttaggctccaaatgagtatcatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0016020 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04216 ko04217 ko04218 ko04621 ko04979 ko05012 ko05016 ko05166 map04020 map04022 map04216 map04217 map04218 map04621 map04979 map05012 map05016 map05166

Pfam Domains

Protein Families

Porin_3

Protein Analysis

256

Amino Acids

27.72

Weight (kDa)

8.41

Isoelectric Point (pI)

21.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014742)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15480
malus_domestica	MD06G1188300.v1.1 MD14G1194800.v1.1
prunus_persica	Prupe.5G186500_v2.0.a1
pyrus_communis	pycom14g16180
rosa_chinensis	RchiOBHm_Chr7g0180611
rosa_laevigata	RLG00000005250
rosa_multiflora	Rmu_sc0005690.1_g000021 Rmu_sc0023372.1_g000001 Rmu_sc0023372.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272740
rosa_rugosa	Rorug06G0434600
rosa_samantha	Rh7AG035600 Rh7BG035500 Rh7CG037200 Rh7DG035800
rosa_wichuraiana	Rw7G002930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	566
AccB7I	CCANNNNNTGG	2 cut(s)	206, 484
AccII	CGCG	1 cut(s)	84
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	3 cut(s)	20, 202, 392
AcyI	GRCGYC	1 cut(s)	567
AfiI	CCNNNNNNNGG	3 cut(s)	206, 450, 484
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	6 cut(s)	296, 388, 397, 415, 466, 526
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	5 cut(s)	220, 411, 462, 470, 534
AluI	AGCT	5 cut(s)	220, 411, 462, 470, 534
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	1 cut(s)	678
AoxI	GGCC	2 cut(s)	42, 507
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	3 cut(s)	20, 202, 392
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AspLEI	GCGC	2 cut(s)	335, 569
AsuHPI	GGTGA	2 cut(s)	29, 499
BanI	GGYRCC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	3 cut(s)	522, 637, 659
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	678
BfoI	RGCGCY	2 cut(s)	336, 570
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
Bme1390I	CCNGG	1 cut(s)	15
BmiI	GGNNCC	2 cut(s)	568, 752
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	567
BsaJI	CCNNGG	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 450, 484
Bse1I	ACTGG	1 cut(s)	600
Bse3DI	GCAATG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	3 cut(s)	206, 450, 484
BseMI	GCAATG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	600
BseXI	GCAGC	1 cut(s)	527
BseYI	CCCAGC	1 cut(s)	570
BsgI	GTGCAG	1 cut(s)	537
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	44, 509
BshNI	GGYRCC	1 cut(s)	566
BsiHKAI	GWGCWC	1 cut(s)	637
BslI	CCNNNNNNNGG	3 cut(s)	206, 450, 484
BsmAI	GTCTC	1 cut(s)	678
BsnI	GGCC	2 cut(s)	44, 509
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	1 cut(s)	49
BspANI	GGCC	2 cut(s)	44, 509
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	568, 752
BspT107I	GGYRCC	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	600
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	1 cut(s)	49
BssNI	GRCGYC	1 cut(s)	567
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	86, 576
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	454
BstFNI	CGCG	1 cut(s)	84
BstH2I	RGCGCY	2 cut(s)	336, 570
BstHHI	GCGC	2 cut(s)	335, 569
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	678
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	4 cut(s)	515, 540, 575, 621
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	44, 509
BtsCI	GGATG	1 cut(s)	454
BtsI	GCAGTG	2 cut(s)	478, 549
BtsIMutI	CAGTG	4 cut(s)	478, 494, 549, 593
Cac8I	GCNNGC	2 cut(s)	86, 576
CfoI	GCGC	2 cut(s)	335, 569
CspCI	CAANNNNNGTGG	2 cut(s)	635, 670
CviAII	CATG	2 cut(s)	135, 474
DdeI	CTNAG	1 cut(s)	284
DinI	GGCGCC	1 cut(s)	568
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	444
Eco32I	GATATC	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	13
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	444
EgeI	GGCGCC	1 cut(s)	568
EheI	GGCGCC	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	2 cut(s)	138, 477
FaiI	YATR	9 cut(s)	27, 60, 69, 136, 371, 373, 375, 475, 641
FatI	CATG	2 cut(s)	134, 473
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	516
GlaI	GCGC	2 cut(s)	334, 568
GluI	GCNGC	1 cut(s)	516
GsaI	CCCAGC	1 cut(s)	574
GsuI	CTGGAG	1 cut(s)	702
HaeII	RGCGCY	2 cut(s)	336, 570
HaeIII	GGCC	2 cut(s)	44, 509
HhaI	GCGC	2 cut(s)	335, 569
Hin1I	GRCGYC	1 cut(s)	567
Hin1II	CATG	2 cut(s)	138, 477
Hin6I	GCGC	2 cut(s)	333, 567
HinP1I	GCGC	2 cut(s)	333, 567
HindIII	AAGCTT	1 cut(s)	468
HphI	GGTGA	2 cut(s)	29, 499
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	2 cut(s)	350, 731
Hpy188III	TCNNGA	2 cut(s)	167, 681
Hpy8I	GTNNAC	1 cut(s)	490
HpyAV	CCTTC	2 cut(s)	34, 355
HpyCH4V	TGCA	6 cut(s)	58, 138, 305, 515, 554, 716
HpyF10VI	GCNNNNNNNGC	4 cut(s)	515, 540, 575, 621
HpyF3I	CTNAG	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	567
Hsp92II	CATG	2 cut(s)	138, 477
HspAI	GCGC	2 cut(s)	333, 567
KasI	GGCGCC	1 cut(s)	566
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	2 cut(s)	217, 756
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	1 cut(s)	268
MaeIII	GTNAC	2 cut(s)	193, 419
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	2 cut(s)	44, 300
MfeI	CAATTG	2 cut(s)	159, 300
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	637
MluCI	AATT	8 cut(s)	20, 90, 159, 202, 300, 383, 392, 609
MluI	ACGCGT	1 cut(s)	82
Mly113I	GGCGCC	1 cut(s)	567
MnlI	CCTC	5 cut(s)	122, 248, 323, 598, 654
MseI	TTAA	2 cut(s)	6, 144
MspR9I	CCNGG	1 cut(s)	15
MunI	CAATTG	2 cut(s)	159, 300
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	4 cut(s)	515, 540, 575, 621
NarI	GGCGCC	1 cut(s)	567
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	2 cut(s)	138, 477
NlaIV	GGNNCC	2 cut(s)	568, 752
NmuCI	GTSAC	2 cut(s)	193, 419
PflFI	GACNNNGTC	1 cut(s)	425
PflMI	CCANNNNNTGG	2 cut(s)	206, 484
PkrI	GCNGC	1 cut(s)	517
PluTI	GGCGCC	1 cut(s)	570
Psp6I	CCWGG	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	568, 752
PsuI	RGATCY	1 cut(s)	49
PsyI	GACNNNGTC	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	6, 144
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	637
SfaNI	GCATC	1 cut(s)	268
SfoI	GGCGCC	1 cut(s)	568
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	8 cut(s)	20, 90, 159, 202, 300, 383, 392, 609
SspDI	GGCGCC	1 cut(s)	566
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	444
TaqI	TCGA	2 cut(s)	106, 607
TasI	AATT	8 cut(s)	20, 90, 159, 202, 300, 383, 392, 609
Tru1I	TTAA	2 cut(s)	6, 144
Tru9I	TTAA	2 cut(s)	6, 144
TscAI	CASTG	4 cut(s)	485, 501, 556, 600
TseFI	GTSAC	2 cut(s)	193, 419
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	2 cut(s)	193, 419
TspDTI	ATGAA	2 cut(s)	83, 462
TspRI	CASTG	4 cut(s)	485, 501, 556, 600
Tth111I	GACNNNGTC	1 cut(s)	425
Van91I	CCANNNNNTGG	2 cut(s)	206, 484
XapI	RAATTY	3 cut(s)	20, 202, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.